Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38121 * 119.92533 * 2 1 4 4 C 1.38029 * 120.31678 * 180.02562 * 3 2 1 5 5 C 1.39793 * 120.14579 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.07713 * 179.97438 * 5 4 3 7 7 N 1.32576 * 119.98690 * 135.63875 * 6 5 4 8 8 C 1.31746 * 121.72280 * 180.02562 * 7 6 5 9 9 C 1.38869 * 121.50173 * 0.02562 * 8 7 6 10 10 C 1.36883 * 119.79948 * 359.97438 * 9 8 7 11 11 C 1.41127 * 118.39481 * 0.02562 * 10 9 8 12 12 C 1.40888 * 120.71954 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00041 * 146.08084 * 12 11 10 14 14 C 1.40069 * 120.00062 * 326.08097 * 12 11 10 15 15 N 1.30771 * 120.00086 * 2.60983 * 14 12 11 16 16 Si 1.86800 * 120.00135 * 182.60898 * 14 12 11 17 17 H 1.48495 * 109.47440 * 89.99928 * 16 14 12 18 18 H 1.48505 * 109.47345 * 210.00148 * 16 14 12 19 19 H 1.48503 * 109.46955 * 329.99855 * 16 14 12 20 20 C 1.39394 * 119.84273 * 0.28184 * 5 4 3 21 21 C 1.39366 * 119.69249 * 359.44363 * 20 5 4 22 22 C 1.47741 * 120.07569 * 180.25394 * 21 20 5 23 23 O 1.21470 * 120.00009 * 186.19207 * 22 21 20 24 24 O 1.34711 * 120.00257 * 6.18643 * 22 21 20 25 25 H 1.09002 * 109.47300 * 96.77392 * 1 2 3 26 26 H 1.08996 * 109.47221 * 216.78188 * 1 2 3 27 27 H 1.09004 * 109.46900 * 336.77854 * 1 2 3 28 28 H 1.08004 * 119.84198 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.92650 * 180.02562 * 4 3 2 30 30 H 1.07997 * 119.25021 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.10231 * 179.71796 * 9 8 7 32 32 H 1.07999 * 120.80843 * 179.97438 * 10 9 8 33 33 H 0.97007 * 120.00003 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.15146 * 179.72068 * 20 5 4 35 35 H 0.96698 * 117.00038 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1971 0.0000 4 6 3.5763 1.2065 -0.0005 5 6 4.2866 0.0025 -0.0005 6 6 5.7649 0.0143 -0.0017 7 7 6.4347 -0.8009 0.8010 8 6 7.7518 -0.8185 0.8283 9 6 8.5056 0.0184 0.0160 10 6 7.8773 0.8853 -0.8369 11 6 6.4663 0.8988 -0.8609 12 6 5.7694 1.7717 -1.7195 13 1 4.8306 1.4644 -2.1561 14 6 6.2941 3.0382 -2.0069 15 7 7.4552 3.3910 -1.5194 16 14 5.3354 4.2234 -3.0865 17 1 4.4469 5.0577 -2.2382 18 1 6.2823 5.0991 -3.8226 19 1 4.5148 3.4555 -4.0572 20 6 3.5976 -1.2093 -0.0059 21 6 2.2040 -1.2111 0.0004 22 6 1.4652 -2.4906 0.0004 23 8 0.2554 -2.4933 -0.1075 24 8 2.1334 -3.6542 0.1200 25 1 -0.3634 -0.1212 -1.0205 26 1 -0.3633 -0.8230 0.6153 27 1 -0.3633 0.9445 0.4052 28 1 1.6522 2.1302 0.0004 29 1 4.1086 2.1461 -0.0001 30 1 8.2567 -1.4993 1.4976 31 1 9.5843 -0.0117 0.0601 32 1 8.4475 1.5436 -1.4755 33 1 7.8183 4.2683 -1.7182 34 1 4.1413 -2.1424 -0.0105 35 1 1.6069 -4.4652 0.1152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243193546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = -47.811331 kcal Electronic energy + Delta-G solvation = -21280.328723 eV Core-core repulsion = 18014.345421 eV Total energy + Delta-G solvation = -3265.983301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26310 -38.91031 -37.73099 -35.95534 -34.22366 -32.82275 -31.05711 -30.60013 -29.77524 -26.83858 -25.45100 -23.93236 -22.21530 -21.61417 -21.26813 -19.71977 -17.85407 -17.49567 -16.86762 -15.69637 -15.49122 -15.25329 -14.89910 -14.70543 -14.18995 -13.99140 -13.46069 -13.20320 -12.98677 -12.63835 -12.55738 -12.08602 -11.90566 -11.58453 -11.46244 -11.40865 -11.32746 -11.17380 -11.14983 -10.83615 -10.60759 -10.00961 -9.87188 -9.47706 -8.65683 -8.52293 -8.21137 -8.09519 -7.38940 -6.89277 -4.65300 1.15023 1.70749 2.51142 2.77068 2.95216 2.99252 2.99939 3.08214 3.27878 3.76617 4.26669 4.50077 5.16457 5.18945 5.33394 5.41752 5.55103 5.68321 5.95643 6.00501 6.03935 6.14628 6.15656 6.24582 6.36264 6.51671 6.63929 6.64650 6.72714 6.81877 6.93046 6.97795 7.12368 7.24865 7.37441 7.61218 7.75603 7.82942 8.10925 8.28707 8.53440 8.57793 9.43509 9.97408 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.006262 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.917990 B = 4470.271473 C = 5932.216604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.037 4.037 3 C -0.145 4.145 4 C -0.047 4.047 5 C 0.003 3.997 6 C 0.018 3.982 7 N -0.456 5.456 8 C -0.022 4.022 9 C -0.153 4.153 10 C -0.120 4.120 11 C 0.083 3.917 12 C -0.445 4.445 13 H 0.086 0.914 14 C 0.072 3.928 15 N -0.799 5.799 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.046 4.046 21 C -0.147 4.147 22 C 0.531 3.469 23 O -0.522 6.522 24 O -0.511 6.511 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.284 0.716 34 H 0.133 0.867 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -3.180 0.648 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.163 4.163 4 C -0.066 4.066 5 C 0.002 3.998 6 C -0.120 4.120 7 N -0.164 5.164 8 C -0.183 4.183 9 C -0.174 4.174 10 C -0.146 4.146 11 C 0.078 3.922 12 C -0.475 4.475 13 H 0.104 0.896 14 C -0.146 4.146 15 N -0.424 5.424 16 Si 0.737 3.263 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.182 1.182 20 C -0.065 4.065 21 C -0.148 4.148 22 C 0.377 3.623 23 O -0.414 6.414 24 O -0.322 6.322 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.144 0.856 29 H 0.159 0.841 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.879 -3.168 1.156 7.662 hybrid contribution 0.096 0.676 -1.010 1.219 sum -6.783 -2.492 0.146 7.228 Atomic orbital electron populations 1.21035 0.90749 1.02501 1.02992 1.19884 0.96066 0.91412 0.96386 1.20864 0.94173 0.96791 1.04448 1.21779 0.93153 0.99226 0.92433 1.18393 0.91783 0.91866 0.97732 1.19515 0.90755 1.02146 0.99560 1.67054 1.09525 1.20120 1.19690 1.21740 0.89381 1.03256 1.03900 1.21521 0.99115 0.98053 0.98670 1.21665 0.94810 0.98341 0.99824 1.18379 0.92340 0.90568 0.90897 1.19534 1.06575 0.97954 1.23460 0.89599 1.25969 0.94697 0.99366 0.94576 1.69693 1.15787 1.21045 1.35909 0.86199 0.80032 0.79779 0.80312 1.19025 1.20004 1.18233 1.21558 0.91671 0.98819 0.94479 1.18670 0.93425 0.89266 1.13466 1.21082 0.85286 0.84272 0.71617 1.90790 1.15410 1.87756 1.47423 1.84650 1.45200 1.16957 1.85363 0.91174 0.89530 0.92510 0.85619 0.84111 0.85968 0.88144 0.84611 0.90513 0.84880 0.73544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.71 36.00 0.31 -1.34 16 2 C -0.04 -0.61 5.92 -104.11 -0.62 -1.23 16 3 C -0.14 -2.41 9.64 -39.70 -0.38 -2.79 16 4 C -0.05 -0.91 7.98 -39.08 -0.31 -1.23 16 5 C 0.00 0.07 5.25 -104.96 -0.55 -0.48 16 6 C 0.02 0.42 6.42 -82.23 -0.53 -0.10 16 7 N -0.46 -10.79 10.16 -9.17 -0.09 -10.88 16 8 C -0.02 -0.48 11.16 -17.35 -0.19 -0.67 16 9 C -0.15 -3.36 10.03 -39.84 -0.40 -3.76 16 10 C -0.12 -2.90 8.73 -38.98 -0.34 -3.24 16 11 C 0.08 2.04 5.54 -106.41 -0.59 1.45 16 12 C -0.45 -10.62 6.54 -37.89 -0.25 -10.86 16 13 H 0.09 2.01 6.81 -52.48 -0.36 1.65 16 14 C 0.07 1.63 5.42 -17.32 -0.09 1.53 16 15 N -0.80 -18.81 10.65 55.55 0.59 -18.22 16 16 Si 0.91 17.27 29.56 -169.99 -5.03 12.25 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 19 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 20 C -0.05 -0.90 9.23 -38.73 -0.36 -1.26 16 21 C -0.15 -2.60 5.87 -105.03 -0.62 -3.21 16 22 C 0.53 8.49 8.20 34.61 0.28 8.77 16 23 O -0.52 -8.75 14.10 -19.24 -0.27 -9.02 16 24 O -0.51 -6.77 12.69 -40.52 -0.51 -7.28 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.09 1.30 5.84 -51.93 -0.30 0.99 16 27 H 0.06 0.68 8.03 -51.93 -0.42 0.26 16 28 H 0.13 1.74 8.05 -52.48 -0.42 1.32 16 29 H 0.14 2.83 6.80 -52.49 -0.36 2.47 16 30 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.14 3.34 6.23 -52.49 -0.33 3.01 16 33 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 34 H 0.13 2.60 7.62 -52.49 -0.40 2.20 16 35 H 0.41 3.19 9.11 45.56 0.42 3.60 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -27.63 304.18 -7.93 -35.56 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -2.57 Total: 11.43 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -4.63 Total: -18.42 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: 0.50 Total: -29.10 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.79 Total: -16.30 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.63 -7.93 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243193546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.251 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds