Wall clock time and date at job start Tue Mar 31 2020 06:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38121 * 119.92533 * 2 1 4 4 C 1.38029 * 120.31678 * 180.02562 * 3 2 1 5 5 C 1.39793 * 120.14579 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.07713 * 179.97438 * 5 4 3 7 7 N 1.32576 * 119.98690 * 135.63875 * 6 5 4 8 8 C 1.31746 * 121.72280 * 180.02562 * 7 6 5 9 9 C 1.38869 * 121.50173 * 0.02562 * 8 7 6 10 10 C 1.36883 * 119.79948 * 359.97438 * 9 8 7 11 11 C 1.41127 * 118.39481 * 0.02562 * 10 9 8 12 12 C 1.40888 * 120.71954 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00041 * 146.08084 * 12 11 10 14 14 C 1.40069 * 120.00062 * 326.08097 * 12 11 10 15 15 N 1.30771 * 120.00086 * 2.60983 * 14 12 11 16 16 Si 1.86800 * 120.00135 * 182.60898 * 14 12 11 17 17 H 1.48495 * 109.47440 * 89.99928 * 16 14 12 18 18 H 1.48505 * 109.47345 * 210.00148 * 16 14 12 19 19 H 1.48503 * 109.46955 * 329.99855 * 16 14 12 20 20 C 1.39394 * 119.84273 * 0.28184 * 5 4 3 21 21 C 1.39366 * 119.69249 * 359.44363 * 20 5 4 22 22 C 1.47741 * 120.07569 * 180.25394 * 21 20 5 23 23 O 1.21470 * 120.00009 * 186.19207 * 22 21 20 24 24 O 1.34711 * 120.00257 * 6.18643 * 22 21 20 25 25 H 1.09002 * 109.47300 * 96.77392 * 1 2 3 26 26 H 1.08996 * 109.47221 * 216.78188 * 1 2 3 27 27 H 1.09004 * 109.46900 * 336.77854 * 1 2 3 28 28 H 1.08004 * 119.84198 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.92650 * 180.02562 * 4 3 2 30 30 H 1.07997 * 119.25021 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.10231 * 179.71796 * 9 8 7 32 32 H 1.07999 * 120.80843 * 179.97438 * 10 9 8 33 33 H 0.97007 * 120.00003 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.15146 * 179.72068 * 20 5 4 35 35 H 0.96698 * 117.00038 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1971 0.0000 4 6 3.5763 1.2065 -0.0005 5 6 4.2866 0.0025 -0.0005 6 6 5.7649 0.0143 -0.0017 7 7 6.4347 -0.8009 0.8010 8 6 7.7518 -0.8185 0.8283 9 6 8.5056 0.0184 0.0160 10 6 7.8773 0.8853 -0.8369 11 6 6.4663 0.8988 -0.8609 12 6 5.7694 1.7717 -1.7195 13 1 4.8306 1.4644 -2.1561 14 6 6.2941 3.0382 -2.0069 15 7 7.4552 3.3910 -1.5194 16 14 5.3354 4.2234 -3.0865 17 1 4.4469 5.0577 -2.2382 18 1 6.2823 5.0991 -3.8226 19 1 4.5148 3.4555 -4.0572 20 6 3.5976 -1.2093 -0.0059 21 6 2.2040 -1.2111 0.0004 22 6 1.4652 -2.4906 0.0004 23 8 0.2554 -2.4933 -0.1075 24 8 2.1334 -3.6542 0.1200 25 1 -0.3634 -0.1212 -1.0205 26 1 -0.3633 -0.8230 0.6153 27 1 -0.3633 0.9445 0.4052 28 1 1.6522 2.1302 0.0004 29 1 4.1086 2.1461 -0.0001 30 1 8.2567 -1.4993 1.4976 31 1 9.5843 -0.0117 0.0601 32 1 8.4475 1.5436 -1.4755 33 1 7.8183 4.2683 -1.7182 34 1 4.1413 -2.1424 -0.0105 35 1 1.6069 -4.4652 0.1152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243193546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:27 Heat of formation + Delta-G solvation = -62.734951 kcal Electronic energy + Delta-G solvation = -21280.975859 eV Core-core repulsion = 18014.345421 eV Total energy + Delta-G solvation = -3266.630438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54857 -40.50360 -39.20769 -37.13920 -35.96717 -34.28298 -32.61638 -32.21580 -31.35256 -28.32808 -27.09575 -25.29608 -23.73704 -23.28168 -22.75470 -21.18911 -19.27471 -19.05999 -18.26919 -17.36308 -16.82866 -16.64838 -16.38113 -16.23280 -15.79234 -15.51655 -14.88853 -14.46422 -14.28240 -14.21006 -14.13259 -13.66763 -13.23004 -13.13241 -13.12908 -12.86475 -12.77032 -12.60010 -12.47395 -12.34682 -12.08479 -11.66236 -11.22402 -11.08574 -10.31981 -9.98850 -9.93203 -9.79313 -9.04860 -8.60146 -6.44864 -0.23484 0.20259 0.85594 1.10836 1.40706 1.50713 1.52851 1.61135 2.14058 2.19144 2.74442 2.84467 3.62950 3.72277 3.91214 4.01607 4.16876 4.32473 4.50122 4.59535 4.62456 4.77404 4.82691 4.86205 4.88525 4.98915 5.08661 5.13821 5.24299 5.29314 5.45650 5.57195 5.64300 5.71679 5.83284 5.94137 6.01577 6.05919 6.50158 6.76016 6.80209 7.02784 7.65888 8.28695 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.006262 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.917990 B = 4470.271473 C = 5932.216604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.032 4.032 3 C -0.134 4.134 4 C -0.056 4.056 5 C -0.026 4.026 6 C 0.008 3.992 7 N -0.474 5.474 8 C -0.029 4.029 9 C -0.152 4.152 10 C -0.144 4.144 11 C 0.053 3.947 12 C -0.460 4.460 13 H 0.082 0.918 14 C 0.037 3.963 15 N -0.827 5.827 16 Si 0.977 3.023 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.259 1.259 20 C -0.051 4.051 21 C -0.154 4.154 22 C 0.536 3.464 23 O -0.529 6.529 24 O -0.509 6.509 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.127 0.873 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.290 0.710 34 H 0.125 0.875 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 -2.964 0.598 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.033 4.033 3 C -0.152 4.152 4 C -0.075 4.075 5 C -0.027 4.027 6 C -0.130 4.130 7 N -0.182 5.182 8 C -0.189 4.189 9 C -0.172 4.172 10 C -0.171 4.171 11 C 0.049 3.951 12 C -0.490 4.490 13 H 0.100 0.900 14 C -0.178 4.178 15 N -0.453 5.453 16 Si 0.798 3.202 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.183 1.183 20 C -0.070 4.070 21 C -0.155 4.155 22 C 0.383 3.617 23 O -0.422 6.422 24 O -0.323 6.323 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.178 0.822 29 H 0.145 0.855 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.101 0.899 34 H 0.143 0.857 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -8.669 -2.993 1.120 9.240 hybrid contribution 0.646 0.488 -0.931 1.234 sum -8.024 -2.505 0.189 8.407 Atomic orbital electron populations 1.21049 0.88489 1.03813 1.03399 1.20276 0.97605 0.90890 0.94542 1.21169 0.92974 0.98370 1.02664 1.21717 0.94405 0.97996 0.93426 1.18453 0.90803 0.93297 1.00172 1.19932 0.92299 1.01687 0.99084 1.67135 1.10374 1.20592 1.20080 1.22308 0.89196 1.03417 1.04019 1.21802 1.00719 0.97046 0.97675 1.21705 0.94956 0.99397 1.01000 1.18729 0.92961 0.91558 0.91831 1.19600 1.06635 0.98710 1.24052 0.89986 1.26727 0.95386 1.00356 0.95350 1.69751 1.17000 1.21781 1.36783 0.85238 0.78781 0.77623 0.78563 1.18021 1.19390 1.18257 1.21441 0.92567 0.97831 0.95152 1.18912 0.92812 0.90966 1.12854 1.20734 0.84922 0.84500 0.71560 1.90792 1.15487 1.88037 1.47835 1.84597 1.45569 1.17451 1.84673 0.90551 0.90123 0.89796 0.82235 0.85482 0.82899 0.85162 0.85746 0.89897 0.85716 0.70699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 8.71 71.24 0.62 -2.17 16 2 C -0.03 -1.01 5.92 -19.53 -0.12 -1.13 16 3 C -0.13 -4.20 9.64 22.19 0.21 -3.99 16 4 C -0.06 -2.20 7.98 22.60 0.18 -2.02 16 5 C -0.03 -1.14 5.25 -20.08 -0.11 -1.25 16 6 C 0.01 0.37 6.42 42.47 0.27 0.65 16 7 N -0.47 -22.78 10.16 -182.91 -1.86 -24.63 16 8 C -0.03 -1.27 11.16 84.86 0.95 -0.33 16 9 C -0.15 -6.71 10.03 22.10 0.22 -6.48 16 10 C -0.14 -7.18 8.73 22.66 0.20 -6.99 16 11 C 0.05 2.74 5.54 -21.03 -0.12 2.62 16 12 C -0.46 -22.58 6.54 23.36 0.15 -22.42 16 13 H 0.08 3.95 6.81 -2.91 -0.02 3.93 16 14 C 0.04 1.69 5.42 85.30 0.46 2.15 16 15 N -0.83 -39.72 10.65 21.85 0.23 -39.49 16 16 Si 0.98 35.14 29.56 68.60 2.03 37.17 16 17 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 18 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 20 C -0.05 -1.99 9.23 22.82 0.21 -1.78 16 21 C -0.15 -5.27 5.87 -20.13 -0.12 -5.39 16 22 C 0.54 16.22 8.20 70.33 0.58 16.80 16 23 O -0.53 -16.51 14.10 19.93 0.28 -16.23 16 24 O -0.51 -12.61 12.69 -56.21 -0.71 -13.32 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 2.18 5.84 -2.39 -0.01 2.16 16 27 H 0.08 1.66 8.03 -2.38 -0.02 1.64 16 28 H 0.16 3.85 8.05 -2.91 -0.02 3.83 16 29 H 0.13 5.23 6.80 -2.91 -0.02 5.21 16 30 H 0.15 5.59 8.06 -2.91 -0.02 5.56 16 31 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.12 6.37 6.23 -2.91 -0.02 6.35 16 33 H 0.29 12.65 8.30 -92.70 -0.77 11.88 16 34 H 0.12 4.97 7.62 -2.91 -0.02 4.95 16 35 H 0.43 5.73 9.11 -74.06 -0.67 5.06 16 Total: -1.00 -60.30 304.18 4.05 -56.26 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.47 Total: 31.97 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.60 Total: -31.73 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -1.63 Total: -64.12 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.43 Total: -29.55 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Total: -60.30 4.05 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243193546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.478 kcal (2) G-P(sol) polarization free energy of solvation -60.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds