Wall clock time and date at job start Tue Mar 31 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38128 * 119.92290 * 2 1 4 4 C 1.38021 * 120.30887 * 179.97438 * 3 2 1 5 5 C 1.39800 * 120.15516 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.08122 * 180.02562 * 5 4 3 7 7 C 1.39670 * 120.64462 * 130.00260 * 6 5 4 8 8 C 1.38401 * 118.46895 * 179.97438 * 7 6 5 9 9 C 1.39049 * 119.72825 * 359.97438 * 8 7 6 10 10 N 1.31279 * 121.33801 * 0.02562 * 9 8 7 11 11 C 1.33698 * 121.63328 * 359.71800 * 10 9 8 12 12 C 1.40821 * 119.94057 * 180.27000 * 11 10 9 13 13 H 1.08004 * 120.00451 * 176.12696 * 12 11 10 14 14 C 1.40159 * 120.00111 * 356.12776 * 12 11 10 15 15 N 1.30690 * 119.99607 * 352.80096 * 14 12 11 16 16 Si 1.86794 * 120.00193 * 172.80137 * 14 12 11 17 17 H 1.48497 * 109.47183 * 94.97278 * 16 14 12 18 18 H 1.48501 * 109.46838 * 214.97051 * 16 14 12 19 19 H 1.48498 * 109.47208 * 334.97079 * 16 14 12 20 20 C 1.39415 * 119.83646 * 0.02562 * 5 4 3 21 21 C 1.39364 * 119.69153 * 359.97438 * 20 5 4 22 22 C 1.47744 * 120.07197 * 179.97438 * 21 20 5 23 23 O 1.21471 * 119.99919 * 187.09533 * 22 21 20 24 24 O 1.34709 * 120.00410 * 7.09479 * 22 21 20 25 25 H 1.09000 * 109.46760 * 97.04841 * 1 2 3 26 26 H 1.08992 * 109.47502 * 217.05546 * 1 2 3 27 27 H 1.09005 * 109.46599 * 337.06001 * 1 2 3 28 28 H 1.07996 * 119.84722 * 0.28180 * 3 2 1 29 29 H 1.08004 * 119.91922 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.76577 * 359.97438 * 7 6 5 31 31 H 1.08001 * 120.13468 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.33217 * 179.97438 * 9 8 7 33 33 H 0.96999 * 120.00194 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.15227 * 180.02562 * 20 5 4 35 35 H 0.96706 * 117.00034 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1972 0.0000 4 6 3.5763 1.2065 0.0005 5 6 4.2867 0.0024 0.0016 6 6 5.7650 0.0143 0.0028 7 6 6.4824 -0.7520 0.9241 8 6 7.8652 -0.7076 0.8846 9 6 8.5027 0.0888 -0.0603 10 7 7.8193 0.8054 -0.9221 11 6 6.4824 0.7991 -0.9355 12 6 5.7852 1.5773 -1.8796 13 1 4.7078 1.5251 -1.9326 14 6 6.4896 2.4197 -2.7506 15 7 7.7759 2.5911 -2.5961 16 14 5.5897 3.2974 -4.1323 17 1 5.2097 4.6622 -3.6871 18 1 6.4776 3.3931 -5.3189 19 1 4.3666 2.5348 -4.4895 20 6 3.5976 -1.2095 0.0016 21 6 2.2040 -1.2112 0.0011 22 6 1.4652 -2.4907 0.0005 23 8 0.2575 -2.4946 -0.1299 24 8 2.1308 -3.6529 0.1446 25 1 -0.3633 -0.1261 -1.0199 26 1 -0.3634 -0.8201 0.6192 27 1 -0.3633 0.9465 0.4006 28 1 1.6524 2.1303 0.0046 29 1 4.1087 2.1462 0.0001 30 1 5.9700 -1.3651 1.6507 31 1 8.4466 -1.2891 1.5848 32 1 9.5820 0.1190 -0.0852 33 1 8.2635 3.1738 -3.1990 34 1 4.1413 -2.1427 0.0029 35 1 1.6043 -4.4641 0.1383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243195388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:14 Heat of formation + Delta-G solvation = -39.837026 kcal Electronic energy + Delta-G solvation = -21243.778623 eV Core-core repulsion = 17978.141114 eV Total energy + Delta-G solvation = -3265.637510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31670 -38.83826 -37.66895 -36.01590 -33.81283 -33.05073 -31.09138 -30.44056 -29.74085 -26.77269 -25.45778 -24.00390 -22.27871 -21.52773 -21.25224 -19.69877 -17.89712 -17.61870 -16.78915 -15.71458 -15.52228 -15.18541 -14.89491 -14.56086 -14.21921 -14.13723 -13.32568 -13.23242 -13.04354 -12.68917 -12.34395 -12.02412 -11.97417 -11.67609 -11.38970 -11.34990 -11.32529 -11.24740 -11.09974 -10.72391 -10.46067 -10.06316 -9.86601 -9.48609 -8.67012 -8.57850 -8.08390 -7.71738 -7.39690 -6.59880 -4.64941 1.09361 1.70131 2.60308 2.77435 2.99499 3.01360 3.04843 3.13395 3.21942 3.83197 4.23076 4.60364 5.12526 5.18436 5.33354 5.56633 5.63729 5.79087 5.90544 5.94192 6.00036 6.03028 6.07186 6.18113 6.33670 6.43406 6.49270 6.65639 6.67519 6.75841 6.88582 6.97278 7.07866 7.20476 7.33889 7.50592 7.63999 7.90340 8.04854 8.09937 8.48955 8.77078 9.94454 10.13235 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.006081 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.886668 B = 4603.436243 C = 5865.045683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.045 4.045 3 C -0.138 4.138 4 C -0.064 4.064 5 C 0.008 3.992 6 C -0.242 4.242 7 C -0.030 4.030 8 C -0.320 4.320 9 C 0.135 3.865 10 N -0.484 5.484 11 C 0.270 3.730 12 C -0.422 4.422 13 H 0.093 0.907 14 C 0.070 3.930 15 N -0.707 5.707 16 Si 0.902 3.098 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.258 1.258 20 C -0.068 4.068 21 C -0.139 4.139 22 C 0.529 3.471 23 O -0.521 6.521 24 O -0.512 6.512 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.276 0.724 34 H 0.130 0.870 35 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 -3.836 3.232 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.156 4.156 4 C -0.082 4.082 5 C 0.007 3.993 6 C -0.246 4.246 7 C -0.054 4.054 8 C -0.343 4.343 9 C -0.034 4.034 10 N -0.195 5.195 11 C 0.147 3.853 12 C -0.451 4.451 13 H 0.110 0.890 14 C -0.157 4.157 15 N -0.327 5.327 16 Si 0.726 3.274 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.087 4.087 21 C -0.140 4.140 22 C 0.376 3.624 23 O -0.412 6.412 24 O -0.323 6.323 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -7.436 -2.801 2.463 8.319 hybrid contribution -0.921 -0.764 -0.005 1.196 sum -8.357 -3.565 2.458 9.412 Atomic orbital electron populations 1.21002 0.90764 1.02338 1.02980 1.19848 0.96048 0.91396 0.97280 1.20879 0.94262 0.96773 1.03656 1.21758 0.93210 0.99122 0.94089 1.18688 0.93204 0.91540 0.95847 1.19259 0.90298 1.10201 1.04886 1.20903 0.93837 0.95044 0.95662 1.21229 0.94538 1.11158 1.07390 1.22606 0.98843 0.91170 0.90793 1.68724 1.07281 1.20685 1.22833 1.18489 0.87929 0.89064 0.89791 1.19777 0.95108 1.17951 1.12298 0.88956 1.26128 0.94802 0.96369 0.98375 1.70062 1.07690 1.24027 1.30895 0.86370 0.80630 0.80073 0.80351 1.19211 1.19825 1.18155 1.21583 0.91846 0.98634 0.96616 1.18669 0.93433 0.89213 1.12727 1.21110 0.85289 0.84269 0.71755 1.90801 1.15542 1.87713 1.47128 1.84634 1.45433 1.17087 1.85170 0.91186 0.89751 0.92539 0.85697 0.84619 0.88429 0.88578 0.86295 0.91231 0.85193 0.73479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.69 36.01 0.31 -1.28 16 2 C -0.05 -0.73 5.92 -104.10 -0.62 -1.35 16 3 C -0.14 -2.22 9.64 -39.70 -0.38 -2.60 16 4 C -0.06 -1.19 7.59 -39.08 -0.30 -1.48 16 5 C 0.01 0.16 4.99 -104.95 -0.52 -0.36 16 6 C -0.24 -5.53 5.53 -104.07 -0.58 -6.11 16 7 C -0.03 -0.64 9.66 -38.99 -0.38 -1.02 16 8 C -0.32 -6.83 10.10 -39.22 -0.40 -7.22 16 9 C 0.13 3.11 11.17 -17.49 -0.20 2.92 16 10 N -0.48 -12.72 7.92 -10.91 -0.09 -12.81 16 11 C 0.27 6.95 6.54 -84.72 -0.55 6.39 16 12 C -0.42 -10.53 7.86 -37.88 -0.30 -10.83 16 13 H 0.09 2.18 5.43 -52.48 -0.29 1.90 16 14 C 0.07 1.70 5.48 -17.32 -0.09 1.60 16 15 N -0.71 -17.87 11.53 55.56 0.64 -17.23 16 16 Si 0.90 17.81 29.57 -169.99 -5.03 12.78 16 17 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 20 C -0.07 -1.25 9.11 -38.72 -0.35 -1.60 16 21 C -0.14 -2.37 5.87 -105.03 -0.62 -2.98 16 22 C 0.53 8.17 8.19 34.62 0.28 8.46 16 23 O -0.52 -8.54 14.14 -19.24 -0.27 -8.81 16 24 O -0.51 -6.42 12.70 -40.52 -0.51 -6.94 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 1.23 5.90 -51.93 -0.31 0.92 16 27 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16 28 H 0.13 1.66 8.05 -52.49 -0.42 1.24 16 29 H 0.14 2.58 7.28 -52.48 -0.38 2.20 16 30 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 33 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 34 H 0.13 2.30 7.62 -52.48 -0.40 1.90 16 35 H 0.41 2.97 9.11 45.56 0.42 3.38 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -29.18 305.54 -7.96 -37.14 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -2.62 Total: 8.74 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -4.68 Total: -17.47 kcal Atomic # 7 Polarization: -30.59 SS G_CDS: 0.55 Total: -30.04 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.79 Total: -15.75 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.18 -7.96 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243195388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.701 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds