Wall clock time and date at job start Tue Mar 31 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38128 * 119.92290 * 2 1 4 4 C 1.38021 * 120.30887 * 179.97438 * 3 2 1 5 5 C 1.39800 * 120.15516 * 359.97438 * 4 3 2 6 6 C 1.47839 * 120.08122 * 180.02562 * 5 4 3 7 7 C 1.39670 * 120.64462 * 130.00260 * 6 5 4 8 8 C 1.38401 * 118.46895 * 179.97438 * 7 6 5 9 9 C 1.39049 * 119.72825 * 359.97438 * 8 7 6 10 10 N 1.31279 * 121.33801 * 0.02562 * 9 8 7 11 11 C 1.33698 * 121.63328 * 359.71800 * 10 9 8 12 12 C 1.40821 * 119.94057 * 180.27000 * 11 10 9 13 13 H 1.08004 * 120.00451 * 176.12696 * 12 11 10 14 14 C 1.40159 * 120.00111 * 356.12776 * 12 11 10 15 15 N 1.30690 * 119.99607 * 352.80096 * 14 12 11 16 16 Si 1.86794 * 120.00193 * 172.80137 * 14 12 11 17 17 H 1.48497 * 109.47183 * 94.97278 * 16 14 12 18 18 H 1.48501 * 109.46838 * 214.97051 * 16 14 12 19 19 H 1.48498 * 109.47208 * 334.97079 * 16 14 12 20 20 C 1.39415 * 119.83646 * 0.02562 * 5 4 3 21 21 C 1.39364 * 119.69153 * 359.97438 * 20 5 4 22 22 C 1.47744 * 120.07197 * 179.97438 * 21 20 5 23 23 O 1.21471 * 119.99919 * 187.09533 * 22 21 20 24 24 O 1.34709 * 120.00410 * 7.09479 * 22 21 20 25 25 H 1.09000 * 109.46760 * 97.04841 * 1 2 3 26 26 H 1.08992 * 109.47502 * 217.05546 * 1 2 3 27 27 H 1.09005 * 109.46599 * 337.06001 * 1 2 3 28 28 H 1.07996 * 119.84722 * 0.28180 * 3 2 1 29 29 H 1.08004 * 119.91922 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.76577 * 359.97438 * 7 6 5 31 31 H 1.08001 * 120.13468 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.33217 * 179.97438 * 9 8 7 33 33 H 0.96999 * 120.00194 * 179.97438 * 15 14 12 34 34 H 1.08003 * 120.15227 * 180.02562 * 20 5 4 35 35 H 0.96706 * 117.00034 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1972 0.0000 4 6 3.5763 1.2065 0.0005 5 6 4.2867 0.0024 0.0016 6 6 5.7650 0.0143 0.0028 7 6 6.4824 -0.7520 0.9241 8 6 7.8652 -0.7076 0.8846 9 6 8.5027 0.0888 -0.0603 10 7 7.8193 0.8054 -0.9221 11 6 6.4824 0.7991 -0.9355 12 6 5.7852 1.5773 -1.8796 13 1 4.7078 1.5251 -1.9326 14 6 6.4896 2.4197 -2.7506 15 7 7.7759 2.5911 -2.5961 16 14 5.5897 3.2974 -4.1323 17 1 5.2097 4.6622 -3.6871 18 1 6.4776 3.3931 -5.3189 19 1 4.3666 2.5348 -4.4895 20 6 3.5976 -1.2095 0.0016 21 6 2.2040 -1.2112 0.0011 22 6 1.4652 -2.4907 0.0005 23 8 0.2575 -2.4946 -0.1299 24 8 2.1308 -3.6529 0.1446 25 1 -0.3633 -0.1261 -1.0199 26 1 -0.3634 -0.8201 0.6192 27 1 -0.3633 0.9465 0.4006 28 1 1.6524 2.1303 0.0046 29 1 4.1087 2.1462 0.0001 30 1 5.9700 -1.3651 1.6507 31 1 8.4466 -1.2891 1.5848 32 1 9.5820 0.1190 -0.0852 33 1 8.2635 3.1738 -3.1990 34 1 4.1413 -2.1427 0.0029 35 1 1.6043 -4.4641 0.1383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243195388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:13 Heat of formation + Delta-G solvation = -55.932154 kcal Electronic energy + Delta-G solvation = -21244.476560 eV Core-core repulsion = 17978.141114 eV Total energy + Delta-G solvation = -3266.335447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54501 -40.37348 -39.16518 -37.14511 -35.57809 -34.50366 -32.52314 -32.08654 -31.30337 -28.29143 -27.07028 -25.31769 -23.76192 -23.15295 -22.73940 -21.11060 -19.40172 -19.05850 -18.10971 -17.38141 -16.76267 -16.56639 -16.32795 -16.15381 -15.79802 -15.62817 -14.74457 -14.41971 -14.28453 -14.22998 -14.02045 -13.62961 -13.21125 -13.12562 -12.87531 -12.84449 -12.81545 -12.59334 -12.47679 -12.28653 -12.00809 -11.62236 -11.22271 -11.13257 -10.30722 -9.93124 -9.77554 -9.51211 -9.02897 -8.35551 -6.47458 -0.23207 0.26998 0.94362 1.17385 1.39635 1.50491 1.54887 1.62116 2.13279 2.19917 2.80840 2.86488 3.81985 3.90209 3.96804 4.10509 4.17511 4.33124 4.38526 4.48510 4.59155 4.79076 4.81267 4.86512 4.88947 4.95993 5.10020 5.13816 5.23156 5.34802 5.47625 5.57646 5.59931 5.64746 5.78163 5.92156 6.03017 6.16269 6.30348 6.71028 6.96239 7.01873 8.16189 8.39878 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.006081 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.886668 B = 4603.436243 C = 5865.045683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.042 4.042 3 C -0.129 4.129 4 C -0.073 4.073 5 C -0.020 4.020 6 C -0.243 4.243 7 C -0.041 4.041 8 C -0.312 4.312 9 C 0.111 3.889 10 N -0.523 5.523 11 C 0.239 3.761 12 C -0.450 4.450 13 H 0.097 0.903 14 C 0.029 3.971 15 N -0.749 5.749 16 Si 0.973 3.027 17 H -0.257 1.257 18 H -0.270 1.270 19 H -0.257 1.257 20 C -0.068 4.068 21 C -0.148 4.148 22 C 0.535 3.465 23 O -0.531 6.531 24 O -0.508 6.508 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.281 0.719 34 H 0.131 0.869 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -4.334 3.549 11.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.042 4.042 3 C -0.147 4.147 4 C -0.091 4.091 5 C -0.020 4.020 6 C -0.248 4.248 7 C -0.065 4.065 8 C -0.335 4.335 9 C -0.056 4.056 10 N -0.235 5.235 11 C 0.115 3.885 12 C -0.480 4.480 13 H 0.115 0.885 14 C -0.194 4.194 15 N -0.371 5.371 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.181 1.181 20 C -0.086 4.086 21 C -0.149 4.149 22 C 0.381 3.619 23 O -0.423 6.423 24 O -0.322 6.322 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.175 0.825 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -9.594 -3.342 2.809 10.540 hybrid contribution -0.299 -0.765 0.034 0.822 sum -9.893 -4.107 2.842 11.082 Atomic orbital electron populations 1.21012 0.88751 1.03647 1.03198 1.20235 0.97474 0.91038 0.95496 1.21161 0.93161 0.98271 1.02083 1.21719 0.94410 0.98105 0.94899 1.18667 0.92036 0.92949 0.98371 1.19571 0.92064 1.09129 1.04010 1.21271 0.94120 0.95246 0.95904 1.21567 0.94943 1.10129 1.06816 1.23021 0.99875 0.91535 0.91158 1.68654 1.08096 1.22255 1.24523 1.18932 0.88280 0.90293 0.91000 1.20017 0.95461 1.19109 1.13402 0.88519 1.26959 0.95401 0.96670 1.00360 1.70154 1.09242 1.25382 1.32277 0.85318 0.79146 0.79060 0.77139 1.18090 1.19430 1.18098 1.21529 0.92549 0.97907 0.96628 1.18911 0.93035 0.90737 1.12227 1.20778 0.84894 0.84561 0.71626 1.90804 1.15795 1.88027 1.47678 1.84576 1.45696 1.17497 1.84434 0.90881 0.90253 0.89922 0.82531 0.85907 0.85758 0.85462 0.84513 0.90831 0.85065 0.70678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 8.69 71.24 0.62 -2.07 16 2 C -0.04 -1.25 5.92 -19.52 -0.12 -1.37 16 3 C -0.13 -3.88 9.64 22.19 0.21 -3.66 16 4 C -0.07 -2.70 7.59 22.60 0.17 -2.53 16 5 C -0.02 -0.79 4.99 -20.07 -0.10 -0.89 16 6 C -0.24 -11.31 5.53 -19.51 -0.11 -11.42 16 7 C -0.04 -1.74 9.66 22.65 0.22 -1.53 16 8 C -0.31 -13.09 10.10 22.50 0.23 -12.87 16 9 C 0.11 5.20 11.17 84.97 0.95 6.15 16 10 N -0.52 -28.48 7.92 -188.44 -1.49 -29.97 16 11 C 0.24 12.68 6.54 40.37 0.26 12.94 16 12 C -0.45 -23.19 7.86 23.37 0.18 -23.00 16 13 H 0.10 4.69 5.43 -2.91 -0.02 4.68 16 14 C 0.03 1.44 5.48 85.33 0.47 1.91 16 15 N -0.75 -39.28 11.53 21.86 0.25 -39.03 16 16 Si 0.97 37.01 29.57 68.60 2.03 39.04 16 17 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 18 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 20 C -0.07 -2.42 9.11 22.82 0.21 -2.21 16 21 C -0.15 -4.75 5.87 -20.13 -0.12 -4.87 16 22 C 0.53 15.27 8.19 70.34 0.58 15.84 16 23 O -0.53 -16.04 14.14 19.93 0.28 -15.76 16 24 O -0.51 -11.44 12.70 -56.18 -0.71 -12.16 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.08 2.07 5.90 -2.39 -0.01 2.06 16 27 H 0.08 1.59 8.03 -2.38 -0.02 1.57 16 28 H 0.16 3.63 8.05 -2.91 -0.02 3.61 16 29 H 0.12 4.79 7.28 -2.91 -0.02 4.77 16 30 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.14 5.67 8.06 -2.91 -0.02 5.64 16 33 H 0.28 13.31 8.29 -92.71 -0.77 12.54 16 34 H 0.13 4.54 7.62 -2.91 -0.02 4.51 16 35 H 0.43 4.99 9.11 -74.05 -0.67 4.31 16 Total: -1.00 -64.25 305.54 4.49 -59.76 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.47 Total: 27.68 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 3.66 Total: -29.57 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.24 Total: -69.00 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.43 Total: -27.92 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -64.25 4.49 -59.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243195388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.832 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds