Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38042 * 119.95923 * 2 1 4 4 C 1.38128 * 120.27969 * 179.74235 * 3 2 1 5 5 C 1.39448 * 120.18467 * 0.50773 * 4 3 2 6 6 C 1.48426 * 120.04782 * 179.74196 * 5 4 3 7 7 C 1.39707 * 120.40885 * 179.44854 * 6 5 4 8 8 N 1.31909 * 121.15234 * 180.29368 * 7 6 5 9 9 C 1.31525 * 122.11802 * 359.95865 * 8 7 6 10 10 C 1.40765 * 120.66737 * 0.04360 * 9 8 7 11 11 C 1.41437 * 120.60808 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99660 * 333.84261 * 11 10 9 13 13 C 1.39935 * 120.00086 * 153.84216 * 11 10 9 14 14 N 1.30828 * 119.99979 * 351.33084 * 13 11 10 15 15 Si 1.86798 * 119.99808 * 171.33195 * 13 11 10 16 16 H 1.48501 * 109.47514 * 59.99869 * 15 13 11 17 17 H 1.48509 * 109.47080 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47159 * 299.99766 * 15 13 11 19 19 C 1.39127 * 120.41089 * 359.72603 * 6 5 4 20 20 C 1.39042 * 119.90205 * 359.46823 * 5 4 3 21 21 C 1.39456 * 119.72678 * 0.27617 * 20 5 4 22 22 C 1.47750 * 120.08927 * 180.02562 * 21 20 5 23 23 O 1.21468 * 119.99433 * 173.07356 * 22 21 20 24 24 O 1.34706 * 119.99859 * 353.07656 * 22 21 20 25 25 H 1.09000 * 109.47370 * 262.95179 * 1 2 3 26 26 H 1.09001 * 109.46537 * 22.95045 * 1 2 3 27 27 H 1.08998 * 109.46828 * 142.94502 * 1 2 3 28 28 H 1.08007 * 119.86003 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.90629 * 180.27570 * 4 3 2 30 30 H 1.08004 * 119.42345 * 0.25267 * 7 6 5 31 31 H 1.08004 * 119.66397 * 180.02562 * 9 8 7 32 32 H 0.97000 * 119.99779 * 179.97438 * 14 13 11 33 33 H 1.07996 * 120.95401 * 359.75046 * 19 6 5 34 34 H 1.08003 * 120.13295 * 180.29448 * 20 5 4 35 35 H 0.96703 * 116.99248 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1960 0.0000 4 6 3.5776 1.2037 0.0054 5 6 4.2855 0.0023 0.0001 6 6 5.7697 0.0142 0.0001 7 6 6.4865 -1.1850 0.0065 8 7 7.8056 -1.1915 0.0124 9 6 8.5103 -0.0811 0.0118 10 6 7.8728 1.1739 0.0056 11 6 8.6320 2.3673 0.0055 12 1 9.6284 2.3734 0.4220 13 6 8.0920 3.5400 -0.5343 14 7 6.9600 3.4980 -1.1889 15 14 8.9875 5.1653 -0.3202 16 1 10.3348 5.0733 -0.9379 17 1 8.2137 6.2475 -0.9803 18 1 9.1260 5.4672 1.1271 19 6 6.4643 1.2196 -0.0004 20 6 3.5989 -1.2068 0.0007 21 6 2.2044 -1.2101 0.0006 22 6 1.4666 -2.4903 0.0018 23 8 0.2586 -2.4949 0.1286 24 8 2.1338 -3.6522 -0.1377 25 1 -0.3634 -0.1261 1.0199 26 1 -0.3632 0.9464 -0.4007 27 1 -0.3633 -0.8201 -0.6192 28 1 1.6534 2.1296 -0.0004 29 1 4.1108 2.1429 0.0098 30 1 5.9512 -2.1231 0.0073 31 1 9.5891 -0.1327 0.0163 32 1 6.5855 4.3110 -1.5627 33 1 5.9392 2.1633 -0.0049 34 1 4.1434 -2.1395 0.0015 35 1 1.6080 -4.4638 -0.1305 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243196608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = -49.564702 kcal Electronic energy + Delta-G solvation = -20855.457720 eV Core-core repulsion = 17589.398387 eV Total energy + Delta-G solvation = -3266.059333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48267 -39.02036 -37.89534 -36.14312 -34.20559 -33.30630 -31.33897 -30.39780 -29.85898 -26.51808 -25.77301 -24.16151 -22.37414 -22.13175 -21.04874 -19.83383 -17.99725 -17.58235 -16.64364 -16.09793 -15.71356 -15.45830 -15.10577 -14.81506 -14.28178 -13.97157 -13.49215 -13.35005 -13.22885 -12.76631 -12.66267 -12.18937 -12.03274 -11.82774 -11.65989 -11.48853 -11.40831 -11.30759 -11.03428 -10.90423 -10.64892 -10.14548 -9.91102 -9.51699 -9.23773 -8.83255 -8.24463 -7.92962 -7.32242 -6.88112 -4.62999 0.86931 1.34882 2.46036 2.69020 2.95796 2.97106 2.98968 3.07972 3.10873 3.78333 4.05445 4.56043 4.90069 4.96583 5.14792 5.30968 5.41766 5.54778 5.66090 5.77270 5.80128 5.91770 5.95332 6.08998 6.19186 6.41586 6.43986 6.52289 6.58292 6.64382 6.72243 6.96592 6.99902 7.06797 7.17146 7.55240 7.74742 7.80615 7.92550 8.30136 8.56826 8.58939 9.49054 9.99361 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.004436 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.797615 B = 6310.302187 C = 7446.268907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.036 4.036 3 C -0.133 4.133 4 C -0.069 4.069 5 C -0.027 4.027 6 C -0.099 4.099 7 C -0.019 4.019 8 N -0.471 5.471 9 C -0.011 4.011 10 C 0.058 3.942 11 C -0.447 4.447 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.801 5.801 15 Si 0.917 3.083 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.112 4.112 20 C -0.058 4.058 21 C -0.138 4.138 22 C 0.530 3.470 23 O -0.518 6.518 24 O -0.511 6.511 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.123 0.877 31 H 0.128 0.872 32 H 0.284 0.716 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -2.958 1.241 10.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.037 4.037 3 C -0.151 4.151 4 C -0.087 4.087 5 C -0.027 4.027 6 C -0.101 4.101 7 C -0.177 4.177 8 N -0.178 5.178 9 C -0.172 4.172 10 C 0.054 3.946 11 C -0.477 4.477 12 H 0.101 0.899 13 C -0.146 4.146 14 N -0.427 5.427 15 Si 0.742 3.258 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.137 4.137 20 C -0.076 4.076 21 C -0.139 4.139 22 C 0.376 3.624 23 O -0.409 6.409 24 O -0.322 6.322 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -9.304 -3.237 1.135 9.916 hybrid contribution -0.356 1.089 -0.059 1.147 sum -9.659 -2.148 1.076 9.954 Atomic orbital electron populations 1.21040 0.90417 1.02705 1.03176 1.19914 0.96342 0.91360 0.96062 1.20911 0.94075 0.97035 1.03082 1.21712 0.93670 0.98941 0.94395 1.18936 0.93381 0.92228 0.98199 1.19423 0.90275 0.95760 1.04635 1.21834 0.89883 0.95302 1.10642 1.66972 1.07900 1.32336 1.10593 1.22627 0.98273 0.87845 1.08471 1.18494 0.92485 0.93675 0.89961 1.19551 1.01731 0.92687 1.33762 0.89893 1.25959 0.94799 1.01269 0.92538 1.69705 1.17234 1.30606 1.25127 0.86202 0.80146 0.79740 0.79756 1.18813 1.20183 1.18727 1.22030 0.94374 0.96397 1.00906 1.21536 0.92052 0.98866 0.95170 1.18718 0.93376 0.89514 1.12313 1.21003 0.85267 0.84274 0.71855 1.90813 1.15428 1.87718 1.46924 1.84623 1.45392 1.17076 1.85091 0.90937 0.92283 0.89486 0.85309 0.84402 0.85910 0.85446 0.90500 0.84122 0.84292 0.73200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.69 36.01 0.31 -1.16 16 2 C -0.04 -0.54 5.92 -104.16 -0.62 -1.15 16 3 C -0.13 -1.95 9.64 -39.69 -0.38 -2.33 16 4 C -0.07 -1.19 9.43 -39.17 -0.37 -1.56 16 5 C -0.03 -0.50 5.87 -104.95 -0.62 -1.12 16 6 C -0.10 -2.18 5.88 -104.82 -0.62 -2.80 16 7 C -0.02 -0.42 10.60 -16.97 -0.18 -0.60 16 8 N -0.47 -11.32 10.32 -12.28 -0.13 -11.44 16 9 C -0.01 -0.28 10.96 -16.73 -0.18 -0.46 16 10 C 0.06 1.46 5.60 -106.71 -0.60 0.87 16 11 C -0.45 -10.99 9.11 -37.73 -0.34 -11.34 16 12 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 13 C 0.07 1.66 5.33 -17.34 -0.09 1.56 16 14 N -0.80 -18.98 10.61 55.55 0.59 -18.39 16 15 Si 0.92 17.39 29.57 -169.99 -5.03 12.37 16 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.28 -5.14 7.11 56.52 0.40 -4.73 16 18 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 19 C -0.11 -2.69 8.15 -38.24 -0.31 -3.00 16 20 C -0.06 -0.98 9.00 -38.83 -0.35 -1.33 16 21 C -0.14 -2.15 5.87 -105.02 -0.62 -2.76 16 22 C 0.53 7.49 8.19 34.62 0.28 7.78 16 23 O -0.52 -7.85 14.14 -19.24 -0.27 -8.12 16 24 O -0.51 -5.81 12.70 -40.51 -0.51 -6.33 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.62 8.03 -51.93 -0.42 0.21 16 27 H 0.09 1.17 5.90 -51.93 -0.31 0.87 16 28 H 0.13 1.53 8.05 -52.48 -0.42 1.11 16 29 H 0.14 2.42 6.25 -52.49 -0.33 2.09 16 30 H 0.12 2.41 6.20 -52.48 -0.33 2.09 16 31 H 0.13 2.85 8.06 -52.48 -0.42 2.43 16 32 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 33 H 0.14 3.37 4.28 -52.49 -0.22 3.14 16 34 H 0.14 2.22 5.78 -52.48 -0.30 1.91 16 35 H 0.41 2.55 9.11 45.56 0.42 2.97 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -28.24 302.84 -7.77 -36.01 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -2.30 Total: 10.75 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -4.68 Total: -19.40 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.46 Total: -29.83 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.79 Total: -14.45 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.24 -7.77 -36.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243196608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.553 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds