Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37706 * 119.98270 * 2 1 4 4 C 1.39710 * 119.97409 * 179.79322 * 3 2 1 5 5 C 1.47665 * 120.02879 * 180.25131 * 4 3 2 6 6 O 1.21481 * 120.00308 * 0.23214 * 5 4 3 7 7 O 1.34730 * 120.00160 * 180.23074 * 5 4 3 8 8 C 1.39744 * 119.94507 * 0.48300 * 4 3 2 9 9 C 1.37672 * 119.97508 * 359.74610 * 8 4 3 10 10 C 1.39490 * 119.98821 * 180.27633 * 2 1 3 11 11 C 1.48271 * 119.97416 * 0.02562 * 10 2 1 12 12 C 1.39899 * 119.60996 * 131.33721 * 11 10 2 13 13 C 1.38712 * 119.45886 * 179.72394 * 12 11 10 14 14 C 1.38270 * 118.69111 * 0.53807 * 13 12 11 15 15 C 1.40725 * 119.18384 * 359.71915 * 14 13 12 16 16 C 1.41398 * 119.76151 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99784 * 1.03267 * 16 15 14 18 18 C 1.40018 * 119.99700 * 181.02936 * 16 15 14 19 19 N 1.30742 * 120.00037 * 351.87048 * 18 16 15 20 20 Si 1.86801 * 119.99972 * 171.87286 * 18 16 15 21 21 H 1.48499 * 109.47048 * 59.99854 * 20 18 16 22 22 H 1.48501 * 109.47062 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47002 * 299.99857 * 20 18 16 24 24 N 1.32240 * 119.60608 * 311.60005 * 11 10 2 25 25 H 1.09001 * 109.47072 * 264.12337 * 1 2 3 26 26 H 1.09004 * 109.47317 * 144.12396 * 1 2 3 27 27 H 1.08994 * 109.47703 * 24.12658 * 1 2 3 28 28 H 1.08005 * 120.01929 * 0.02562 * 3 2 1 29 29 H 0.96704 * 117.00049 * 180.02562 * 7 5 4 30 30 H 1.07997 * 120.01594 * 179.77220 * 8 4 3 31 31 H 1.07997 * 119.98764 * 179.97438 * 9 8 4 32 32 H 1.07997 * 120.26141 * 359.97318 * 12 11 10 33 33 H 1.08007 * 120.65299 * 180.25899 * 13 12 11 34 34 H 1.08001 * 120.40739 * 179.70903 * 14 13 12 35 35 H 0.97002 * 119.99911 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1928 0.0000 4 6 3.5923 1.1926 0.0044 5 6 4.3314 2.4709 0.0100 6 8 3.7247 3.5234 0.0151 7 8 5.6787 2.4701 0.0095 8 6 4.2897 -0.0184 -0.0015 9 6 3.5995 -1.2096 -0.0062 10 6 2.2042 -1.2082 -0.0058 11 6 1.4620 -2.4917 -0.0126 12 6 1.8118 -3.4876 -0.9307 13 6 1.1192 -4.6894 -0.9305 14 6 0.0899 -4.8622 -0.0235 15 6 -0.2182 -3.8207 0.8714 16 6 -1.2687 -3.9841 1.8036 17 1 -1.8204 -4.9119 1.8382 18 6 -1.5936 -2.9430 2.6817 19 7 -0.8298 -1.8842 2.7513 20 14 -3.1182 -3.0670 3.7539 21 1 -3.0089 -4.2579 4.6342 22 1 -3.2372 -1.8445 4.5884 23 1 -4.3203 -3.1974 2.8918 24 7 0.4738 -2.6795 0.8459 25 1 -0.3633 -0.1052 1.0223 26 1 -0.3634 -0.8327 -0.6023 27 1 -0.3634 0.9378 -0.4200 28 1 1.6552 2.1281 0.0004 29 1 6.1183 3.3314 0.0137 30 1 5.3697 -0.0199 -0.0018 31 1 4.1383 -2.1456 -0.0112 32 1 2.6172 -3.3235 -1.6312 33 1 1.3758 -5.4731 -1.6280 34 1 -0.4708 -5.7850 -0.0023 35 1 -1.0547 -1.1632 3.3600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243200921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -41.405344 kcal Electronic energy + Delta-G solvation = -21112.653596 eV Core-core repulsion = 17846.948079 eV Total energy + Delta-G solvation = -3265.705517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26468 -39.02417 -37.66565 -36.01892 -33.80065 -32.69178 -31.64283 -30.51894 -29.24296 -26.60404 -25.72277 -24.52289 -21.83289 -21.64896 -20.97184 -20.02283 -17.82289 -17.56176 -16.95375 -15.99112 -15.52781 -14.94448 -14.87492 -14.66071 -14.12876 -13.99504 -13.50469 -13.14781 -12.98421 -12.62502 -12.26666 -12.22330 -11.66978 -11.58291 -11.32390 -11.29599 -11.19620 -11.12206 -10.85695 -10.68945 -10.57578 -10.42870 -10.03922 -9.43832 -8.80481 -8.37278 -8.20914 -7.70970 -7.50059 -6.53047 -4.61324 0.89033 1.75500 2.45103 2.79993 2.97973 3.04382 3.05465 3.10581 3.14755 3.88051 4.12913 4.62750 5.07028 5.14015 5.23529 5.37489 5.62448 5.66673 5.83989 6.01805 6.05224 6.21870 6.33565 6.38117 6.43501 6.54315 6.56554 6.60657 6.64291 6.75751 6.96142 7.00523 7.12969 7.20596 7.33652 7.45155 7.61230 7.89777 7.95430 8.11036 8.55274 8.80050 9.91212 10.19776 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.004999 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.519224 B = 5599.582757 C = 6667.093569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.058 4.058 3 C -0.062 4.062 4 C -0.143 4.143 5 C 0.531 3.469 6 O -0.523 6.523 7 O -0.514 6.514 8 C -0.073 4.073 9 C -0.121 4.121 10 C 0.033 3.967 11 C 0.166 3.834 12 C -0.297 4.297 13 C -0.059 4.059 14 C -0.269 4.269 15 C 0.254 3.746 16 C -0.430 4.430 17 H 0.084 0.916 18 C 0.073 3.927 19 N -0.712 5.712 20 Si 0.905 3.095 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.264 1.264 24 N -0.459 5.459 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.132 0.868 29 H 0.409 0.591 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.674 4.562 -3.315 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.058 4.058 3 C -0.080 4.080 4 C -0.145 4.145 5 C 0.377 3.623 6 O -0.413 6.413 7 O -0.326 6.326 8 C -0.092 4.092 9 C -0.140 4.140 10 C 0.032 3.968 11 C 0.021 3.979 12 C -0.320 4.320 13 C -0.083 4.083 14 C -0.292 4.292 15 C 0.129 3.871 16 C -0.460 4.460 17 H 0.102 0.898 18 C -0.153 4.153 19 N -0.333 5.333 20 Si 0.730 3.270 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.189 1.189 24 N -0.172 5.172 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.150 0.850 29 H 0.267 0.733 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.069 5.293 -2.577 8.455 hybrid contribution -0.032 -0.237 -0.125 0.270 sum 6.037 5.056 -2.702 8.325 Atomic orbital electron populations 1.20789 0.89592 1.00433 1.05137 1.19964 0.97278 0.90997 0.97595 1.21007 0.91750 0.98416 0.96858 1.18888 0.93192 0.90102 1.12293 1.21055 0.80034 0.89688 0.71550 1.90857 1.69485 1.33884 1.47115 1.84592 1.21462 1.40437 1.86083 1.21182 0.99884 0.91035 0.97074 1.21160 0.93257 0.98017 1.01527 1.19029 0.92316 0.92455 0.92965 1.19658 0.94063 0.90971 0.93176 1.21150 1.07342 0.96696 1.06849 1.20785 0.95018 0.95694 0.96810 1.21819 1.03255 1.01162 1.02964 1.18526 0.91164 0.86624 0.90772 1.19566 1.12758 1.00480 1.13239 0.89808 1.26016 0.97456 0.94890 0.96946 1.70062 1.32187 1.04375 1.26686 0.86417 0.81959 0.78716 0.79950 1.19012 1.20175 1.18908 1.68873 1.05476 1.22381 1.20454 0.88040 0.91432 0.93702 0.85001 0.73323 0.84992 0.85217 0.88538 0.88378 0.88217 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 8.71 36.01 0.31 -1.70 16 2 C -0.06 -1.11 5.89 -104.35 -0.62 -1.72 16 3 C -0.06 -1.07 9.20 -39.23 -0.36 -1.43 16 4 C -0.14 -2.30 5.88 -104.94 -0.62 -2.91 16 5 C 0.53 7.80 8.27 34.58 0.29 8.08 16 6 O -0.52 -8.90 17.12 -19.25 -0.33 -9.23 16 7 O -0.51 -5.59 12.67 -40.57 -0.51 -6.11 16 8 C -0.07 -1.11 9.60 -39.23 -0.38 -1.48 16 9 C -0.12 -2.05 9.43 -39.31 -0.37 -2.42 16 10 C 0.03 0.67 5.61 -104.82 -0.59 0.08 16 11 C 0.17 3.79 5.44 -82.94 -0.45 3.34 16 12 C -0.30 -6.34 9.51 -38.78 -0.37 -6.71 16 13 C -0.06 -1.26 10.15 -39.39 -0.40 -1.66 16 14 C -0.27 -6.26 9.83 -38.63 -0.38 -6.64 16 15 C 0.25 6.54 6.55 -85.00 -0.56 5.98 16 16 C -0.43 -10.83 9.13 -37.71 -0.34 -11.17 16 17 H 0.08 1.99 7.86 -52.49 -0.41 1.57 16 18 C 0.07 1.74 5.48 -17.35 -0.10 1.64 16 19 N -0.71 -17.52 10.56 55.55 0.59 -16.94 16 20 Si 0.91 17.75 29.57 -169.99 -5.03 12.72 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 N -0.46 -11.63 6.29 -7.68 -0.05 -11.68 16 25 H 0.10 2.18 7.17 -51.93 -0.37 1.81 16 26 H 0.07 1.45 7.00 -51.93 -0.36 1.08 16 27 H 0.04 0.74 8.04 -51.93 -0.42 0.32 16 28 H 0.13 2.15 7.64 -52.48 -0.40 1.75 16 29 H 0.41 2.43 9.11 45.56 0.42 2.84 16 30 H 0.13 1.64 7.60 -52.49 -0.40 1.24 16 31 H 0.13 2.02 8.00 -52.49 -0.42 1.60 16 32 H 0.10 1.83 8.00 -52.49 -0.42 1.41 16 33 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -28.83 311.02 -8.34 -37.16 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -2.77 Total: 8.11 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -4.92 Total: -18.73 kcal Atomic # 7 Polarization: -29.15 SS G_CDS: 0.54 Total: -28.61 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.84 Total: -15.34 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.83 -8.34 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243200921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.242 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds