Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37706 * 119.98270 * 2 1 4 4 C 1.39710 * 119.97409 * 179.79322 * 3 2 1 5 5 C 1.47665 * 120.02879 * 180.25131 * 4 3 2 6 6 O 1.21481 * 120.00308 * 0.23214 * 5 4 3 7 7 O 1.34730 * 120.00160 * 180.23074 * 5 4 3 8 8 C 1.39744 * 119.94507 * 0.48300 * 4 3 2 9 9 C 1.37672 * 119.97508 * 359.74610 * 8 4 3 10 10 C 1.39490 * 119.98821 * 180.27633 * 2 1 3 11 11 C 1.48271 * 119.97416 * 0.02562 * 10 2 1 12 12 C 1.39899 * 119.60996 * 131.33721 * 11 10 2 13 13 C 1.38712 * 119.45886 * 179.72394 * 12 11 10 14 14 C 1.38270 * 118.69111 * 0.53807 * 13 12 11 15 15 C 1.40725 * 119.18384 * 359.71915 * 14 13 12 16 16 C 1.41398 * 119.76151 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99784 * 1.03267 * 16 15 14 18 18 C 1.40018 * 119.99700 * 181.02936 * 16 15 14 19 19 N 1.30742 * 120.00037 * 351.87048 * 18 16 15 20 20 Si 1.86801 * 119.99972 * 171.87286 * 18 16 15 21 21 H 1.48499 * 109.47048 * 59.99854 * 20 18 16 22 22 H 1.48501 * 109.47062 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47002 * 299.99857 * 20 18 16 24 24 N 1.32240 * 119.60608 * 311.60005 * 11 10 2 25 25 H 1.09001 * 109.47072 * 264.12337 * 1 2 3 26 26 H 1.09004 * 109.47317 * 144.12396 * 1 2 3 27 27 H 1.08994 * 109.47703 * 24.12658 * 1 2 3 28 28 H 1.08005 * 120.01929 * 0.02562 * 3 2 1 29 29 H 0.96704 * 117.00049 * 180.02562 * 7 5 4 30 30 H 1.07997 * 120.01594 * 179.77220 * 8 4 3 31 31 H 1.07997 * 119.98764 * 179.97438 * 9 8 4 32 32 H 1.07997 * 120.26141 * 359.97318 * 12 11 10 33 33 H 1.08007 * 120.65299 * 180.25899 * 13 12 11 34 34 H 1.08001 * 120.40739 * 179.70903 * 14 13 12 35 35 H 0.97002 * 119.99911 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1928 0.0000 4 6 3.5923 1.1926 0.0044 5 6 4.3314 2.4709 0.0100 6 8 3.7247 3.5234 0.0151 7 8 5.6787 2.4701 0.0095 8 6 4.2897 -0.0184 -0.0015 9 6 3.5995 -1.2096 -0.0062 10 6 2.2042 -1.2082 -0.0058 11 6 1.4620 -2.4917 -0.0126 12 6 1.8118 -3.4876 -0.9307 13 6 1.1192 -4.6894 -0.9305 14 6 0.0899 -4.8622 -0.0235 15 6 -0.2182 -3.8207 0.8714 16 6 -1.2687 -3.9841 1.8036 17 1 -1.8204 -4.9119 1.8382 18 6 -1.5936 -2.9430 2.6817 19 7 -0.8298 -1.8842 2.7513 20 14 -3.1182 -3.0670 3.7539 21 1 -3.0089 -4.2579 4.6342 22 1 -3.2372 -1.8445 4.5884 23 1 -4.3203 -3.1974 2.8918 24 7 0.4738 -2.6795 0.8459 25 1 -0.3633 -0.1052 1.0223 26 1 -0.3634 -0.8327 -0.6023 27 1 -0.3634 0.9378 -0.4200 28 1 1.6552 2.1281 0.0004 29 1 6.1183 3.3314 0.0137 30 1 5.3697 -0.0199 -0.0018 31 1 4.1383 -2.1456 -0.0112 32 1 2.6172 -3.3235 -1.6312 33 1 1.3758 -5.4731 -1.6280 34 1 -0.4708 -5.7850 -0.0023 35 1 -1.0547 -1.1632 3.3600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243200921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -56.919644 kcal Electronic energy + Delta-G solvation = -21113.326346 eV Core-core repulsion = 17846.948079 eV Total energy + Delta-G solvation = -3266.378268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46225 -40.49627 -39.20260 -37.06744 -35.55468 -34.13441 -33.12868 -32.26602 -30.83923 -28.12841 -27.38650 -25.93666 -23.44711 -23.06668 -22.49704 -21.39970 -19.32252 -18.92343 -18.18798 -17.56525 -16.63665 -16.47709 -16.42353 -16.28912 -15.81972 -15.28880 -14.97543 -14.61609 -14.35323 -14.08141 -13.95211 -13.73638 -13.13225 -12.92119 -12.89903 -12.77699 -12.71736 -12.62103 -12.53035 -12.18024 -12.01522 -11.79475 -11.62866 -11.17387 -10.33718 -9.93702 -9.75044 -9.47901 -9.16707 -8.29044 -6.47455 -0.44438 0.41795 0.84356 1.15765 1.42378 1.51320 1.53137 1.62322 2.06486 2.23742 2.73963 2.89521 3.64032 3.78074 3.93794 3.95779 4.18758 4.27014 4.34761 4.47924 4.69429 4.75406 4.81189 4.87906 4.92199 4.97119 5.00800 5.14797 5.24834 5.28836 5.48545 5.52775 5.56671 5.63998 5.75534 5.84650 5.91414 6.16847 6.27848 6.75436 6.97115 6.99382 8.14007 8.44758 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.004999 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.519224 B = 5599.582757 C = 6667.093569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.074 4.074 3 C -0.064 4.064 4 C -0.144 4.144 5 C 0.542 3.458 6 O -0.549 6.549 7 O -0.499 6.499 8 C -0.055 4.055 9 C -0.119 4.119 10 C 0.002 3.998 11 C 0.151 3.849 12 C -0.296 4.296 13 C -0.057 4.057 14 C -0.292 4.292 15 C 0.222 3.778 16 C -0.467 4.467 17 H 0.086 0.914 18 C 0.033 3.967 19 N -0.741 5.741 20 Si 0.978 3.022 21 H -0.261 1.261 22 H -0.270 1.270 23 H -0.263 1.263 24 N -0.484 5.484 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.138 0.862 29 H 0.434 0.566 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.627 5.264 -3.727 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.082 4.082 4 C -0.145 4.145 5 C 0.388 3.612 6 O -0.442 6.442 7 O -0.313 6.313 8 C -0.073 4.073 9 C -0.137 4.137 10 C 0.001 3.999 11 C 0.007 3.993 12 C -0.319 4.319 13 C -0.081 4.081 14 C -0.315 4.315 15 C 0.097 3.903 16 C -0.498 4.498 17 H 0.104 0.896 18 C -0.189 4.189 19 N -0.363 5.363 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.187 1.187 24 N -0.197 5.197 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.296 0.704 30 H 0.186 0.814 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.069 5.997 -3.007 10.494 hybrid contribution -0.429 -0.399 -0.103 0.595 sum 7.640 5.598 -3.109 9.969 Atomic orbital electron populations 1.20592 0.90628 1.00410 1.03182 1.19933 0.96814 0.91742 0.99027 1.21037 0.92718 0.97752 0.96712 1.19112 0.92906 0.91499 1.11007 1.20690 0.81081 0.88487 0.70961 1.90863 1.70409 1.34566 1.48359 1.84516 1.19207 1.42494 1.85041 1.21490 1.01423 0.89670 0.94729 1.21338 0.91940 0.99593 1.00860 1.19123 0.93688 0.91480 0.95570 1.20211 0.93650 0.92593 0.92858 1.21537 1.07582 0.96302 1.06470 1.21190 0.93819 0.96600 0.96477 1.22003 1.04590 1.01206 1.03681 1.18980 0.91886 0.87676 0.91786 1.19874 1.13825 1.01436 1.14676 0.89611 1.26786 1.00173 0.94178 0.97804 1.70162 1.33768 1.04957 1.27392 0.85328 0.77957 0.78821 0.78025 1.18546 1.19475 1.18699 1.68853 1.06519 1.22527 1.21775 0.90497 0.94263 0.91295 0.84456 0.70399 0.81414 0.83706 0.85767 0.84764 0.87362 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.73 8.71 71.24 0.62 -3.11 16 2 C -0.07 -2.89 5.89 -19.69 -0.12 -3.00 16 3 C -0.06 -2.15 9.20 22.50 0.21 -1.95 16 4 C -0.14 -4.25 5.88 -20.07 -0.12 -4.36 16 5 C 0.54 14.20 8.27 70.31 0.58 14.78 16 6 O -0.55 -17.43 17.12 19.90 0.34 -17.09 16 7 O -0.50 -8.65 12.67 -56.40 -0.71 -9.36 16 8 C -0.06 -1.48 9.60 22.50 0.22 -1.26 16 9 C -0.12 -3.79 9.43 22.45 0.21 -3.58 16 10 C 0.00 0.09 5.61 -20.00 -0.11 -0.02 16 11 C 0.15 7.00 5.44 42.16 0.23 7.23 16 12 C -0.30 -12.41 9.51 22.79 0.22 -12.20 16 13 C -0.06 -2.38 10.15 22.39 0.23 -2.15 16 14 C -0.29 -13.89 9.83 22.89 0.23 -13.66 16 15 C 0.22 11.90 6.55 40.28 0.26 12.17 16 16 C -0.47 -24.60 9.13 23.48 0.21 -24.38 16 17 H 0.09 4.26 7.86 -2.91 -0.02 4.23 16 18 C 0.03 1.65 5.48 85.29 0.47 2.12 16 19 N -0.74 -38.03 10.56 21.83 0.23 -37.80 16 20 Si 0.98 37.36 29.57 68.60 2.03 39.39 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 22 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 N -0.48 -25.46 6.29 -178.21 -1.12 -26.58 16 25 H 0.08 3.50 7.17 -2.39 -0.02 3.49 16 26 H 0.04 1.77 7.00 -2.38 -0.02 1.75 16 27 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 28 H 0.14 4.39 7.64 -2.91 -0.02 4.36 16 29 H 0.43 3.19 9.11 -74.05 -0.67 2.52 16 30 H 0.17 3.30 7.60 -2.91 -0.02 3.28 16 31 H 0.15 4.11 8.00 -2.91 -0.02 4.09 16 32 H 0.12 4.42 8.00 -2.91 -0.02 4.40 16 33 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.28 13.09 8.29 -92.71 -0.77 12.32 16 Total: -1.00 -64.69 311.02 4.56 -60.13 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.46 Total: 24.69 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 3.33 Total: -33.37 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.89 Total: -64.38 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.37 Total: -26.46 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -64.69 4.56 -60.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243200921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.212 kcal (2) G-P(sol) polarization free energy of solvation -64.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds