Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37648 * 120.06526 * 2 1 4 4 C 1.39808 * 119.87461 * 179.97438 * 3 2 1 5 5 C 1.47746 * 119.99784 * 180.02562 * 4 3 2 6 6 N 1.32605 * 119.99655 * 315.70486 * 5 4 3 7 7 C 1.31689 * 121.72759 * 180.02562 * 6 5 4 8 8 C 1.38932 * 121.51522 * 359.97438 * 7 6 5 9 9 C 1.36851 * 119.79727 * 0.02562 * 8 7 6 10 10 C 1.41176 * 118.39488 * 0.02562 * 9 8 7 11 11 C 1.40826 * 120.72344 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00529 * 146.57232 * 11 10 9 13 13 C 1.40156 * 120.00204 * 326.57241 * 11 10 9 14 14 N 1.30725 * 120.00063 * 1.46772 * 13 11 10 15 15 Si 1.86795 * 120.00490 * 181.46490 * 13 11 10 16 16 H 1.48509 * 109.47133 * 60.00146 * 15 13 11 17 17 H 1.48501 * 109.47693 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47415 * 300.00419 * 15 13 11 19 19 C 1.39805 * 119.99523 * 0.27373 * 4 3 2 20 20 C 1.36572 * 120.12808 * 359.44613 * 19 4 3 21 21 C 1.39793 * 120.12830 * 0.55474 * 20 19 4 22 22 C 1.47633 * 120.00196 * 179.74201 * 21 20 19 23 23 O 1.21494 * 120.00076 * 186.59761 * 22 21 20 24 24 O 1.34737 * 119.99860 * 6.59715 * 22 21 20 25 25 H 1.08991 * 109.47304 * 96.44644 * 1 2 3 26 26 H 1.09001 * 109.47193 * 216.44914 * 1 2 3 27 27 H 1.09002 * 109.47149 * 336.44206 * 1 2 3 28 28 H 1.07999 * 120.06074 * 359.96145 * 3 2 1 29 29 H 1.07999 * 119.24298 * 180.02562 * 7 6 5 30 30 H 1.07994 * 120.09959 * 179.72535 * 8 7 6 31 31 H 1.08008 * 120.80567 * 180.02562 * 9 8 7 32 32 H 0.96990 * 120.00489 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.92902 * 179.70097 * 19 4 3 34 34 H 1.08008 * 119.93368 * 180.27828 * 20 19 4 35 35 H 0.96707 * 116.99863 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1913 0.0000 4 6 3.5946 1.1866 0.0005 5 6 4.3376 2.4637 0.0011 6 7 3.9607 3.4503 -0.8008 7 6 4.5983 4.6022 -0.8285 8 6 5.6999 4.8422 -0.0166 9 6 6.1423 3.8667 0.8352 10 6 5.4549 2.6338 0.8590 11 6 5.8684 1.5959 1.7163 12 1 5.1375 0.9275 2.1468 13 6 7.2286 1.4304 2.0110 14 7 8.1106 2.2568 1.5130 15 14 7.7813 0.0288 3.1153 16 1 7.3860 -1.2667 2.5063 17 1 9.2577 0.0726 3.2694 18 1 7.1398 0.1657 4.4475 19 6 4.2895 -0.0265 -0.0047 20 6 3.6053 -1.2084 0.0011 21 6 2.2074 -1.2100 0.0005 22 6 1.4706 -2.4893 0.0010 23 8 0.2617 -2.4942 -0.1204 24 8 2.1388 -3.6515 0.1360 25 1 -0.3633 -0.1154 -1.0211 26 1 -0.3633 -0.8266 0.6105 27 1 -0.3633 0.9420 0.4107 28 1 1.6586 2.1278 -0.0006 29 1 4.2566 5.3785 -1.4970 30 1 6.2084 5.7939 -0.0611 31 1 6.9967 4.0359 1.4739 32 1 9.0519 2.1421 1.7165 33 1 5.3695 -0.0288 -0.0092 34 1 4.1454 -2.1438 0.0015 35 1 1.6133 -4.4633 0.1301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243210694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = -48.161339 kcal Electronic energy + Delta-G solvation = -21232.382176 eV Core-core repulsion = 17966.383697 eV Total energy + Delta-G solvation = -3265.998479 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25352 -38.96004 -37.71983 -35.96139 -34.28453 -32.63227 -31.66077 -30.67880 -29.12905 -26.86964 -25.78980 -24.10190 -22.03989 -21.53932 -21.11491 -19.74908 -17.86318 -17.53715 -16.85171 -15.95998 -15.59357 -15.48755 -14.88337 -14.30953 -14.12939 -13.91911 -13.43241 -13.19338 -12.83719 -12.68730 -12.49509 -12.31906 -11.91145 -11.63226 -11.53378 -11.47586 -11.31877 -11.21217 -11.18513 -10.70307 -10.53201 -10.09200 -9.85881 -9.49988 -8.76622 -8.35654 -8.22704 -8.12776 -7.48188 -6.94640 -4.68929 1.04026 1.96831 2.39119 2.72387 2.93606 2.96279 3.03545 3.09211 3.28196 3.73957 4.29560 4.46798 5.20347 5.22669 5.27473 5.46041 5.51746 5.80303 5.96201 6.03601 6.06082 6.12419 6.19102 6.23262 6.43229 6.51837 6.62940 6.63590 6.76496 6.85835 6.90076 6.93524 7.11073 7.27398 7.40590 7.57379 7.71447 7.78511 8.11051 8.24187 8.47948 8.52777 9.39430 9.91908 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.006307 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.089258 B = 4438.404331 C = 6047.441837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.021 4.021 3 C -0.130 4.130 4 C 0.075 3.925 5 C 0.001 3.999 6 N -0.452 5.452 7 C -0.022 4.022 8 C -0.151 4.151 9 C -0.120 4.120 10 C 0.086 3.914 11 C -0.440 4.440 12 H 0.087 0.913 13 C 0.072 3.928 14 N -0.795 5.795 15 Si 0.915 3.085 16 H -0.259 1.259 17 H -0.276 1.276 18 H -0.262 1.262 19 C -0.117 4.117 20 C -0.065 4.065 21 C -0.165 4.165 22 C 0.529 3.471 23 O -0.523 6.523 24 O -0.515 6.515 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.286 0.714 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -5.818 0.014 7.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.022 4.022 3 C -0.149 4.149 4 C 0.074 3.926 5 C -0.135 4.135 6 N -0.159 5.159 7 C -0.184 4.184 8 C -0.171 4.171 9 C -0.146 4.146 10 C 0.081 3.919 11 C -0.469 4.469 12 H 0.105 0.895 13 C -0.147 4.147 14 N -0.420 5.420 15 Si 0.738 3.262 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.136 4.136 20 C -0.083 4.083 21 C -0.167 4.167 22 C 0.376 3.624 23 O -0.415 6.415 24 O -0.326 6.326 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.929 -5.534 -0.551 7.431 hybrid contribution 0.963 -0.816 0.960 1.586 sum -3.966 -6.350 0.410 7.498 Atomic orbital electron populations 1.21037 0.90679 1.02613 1.02988 1.19811 0.96080 0.91263 0.94999 1.21118 0.93556 0.96849 1.03387 1.18770 0.91833 0.92101 0.89865 1.19559 1.00836 0.92726 1.00399 1.67031 1.29167 1.00191 1.19536 1.21748 0.97532 0.95141 1.04011 1.21539 0.97848 0.99234 0.98504 1.21671 1.01365 0.91747 0.99813 1.18371 0.89968 0.92705 0.90825 1.19569 0.92582 1.11644 1.23102 0.89464 1.26014 0.96608 0.97401 0.94671 1.69657 1.03607 1.33376 1.35328 0.86219 0.78024 0.81183 0.80746 1.18302 1.20097 1.18596 1.21184 1.01510 0.90709 1.00154 1.20967 0.92285 0.98745 0.96288 1.18713 0.93567 0.89058 1.15347 1.21099 0.85329 0.84171 0.71777 1.90799 1.15531 1.87672 1.47491 1.84624 1.45433 1.17092 1.85497 0.91082 0.89540 0.92365 0.85432 0.85895 0.88056 0.84608 0.90303 0.84122 0.85306 0.73638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.72 36.00 0.31 -1.47 16 2 C -0.02 -0.37 5.91 -104.25 -0.62 -0.99 16 3 C -0.13 -2.52 9.28 -39.21 -0.36 -2.88 16 4 C 0.08 1.60 5.25 -104.84 -0.55 1.05 16 5 C 0.00 0.03 6.41 -82.25 -0.53 -0.49 16 6 N -0.45 -10.61 10.15 -9.18 -0.09 -10.70 16 7 C -0.02 -0.48 11.16 -17.36 -0.19 -0.68 16 8 C -0.15 -3.27 10.03 -39.83 -0.40 -3.67 16 9 C -0.12 -2.86 8.72 -38.97 -0.34 -3.20 16 10 C 0.09 2.11 5.54 -106.41 -0.59 1.52 16 11 C -0.44 -10.41 6.57 -37.88 -0.25 -10.66 16 12 H 0.09 2.02 6.78 -52.49 -0.36 1.67 16 13 C 0.07 1.61 5.42 -17.30 -0.09 1.52 16 14 N -0.79 -18.52 10.66 55.56 0.59 -17.93 16 15 Si 0.91 17.15 29.56 -169.99 -5.03 12.12 16 16 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 17 H -0.28 -5.08 7.11 56.52 0.40 -4.67 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 C -0.12 -2.31 7.91 -39.60 -0.31 -2.62 16 20 C -0.06 -1.12 9.55 -39.60 -0.38 -1.50 16 21 C -0.17 -2.85 5.88 -104.89 -0.62 -3.47 16 22 C 0.53 8.19 8.19 34.57 0.28 8.47 16 23 O -0.52 -8.74 14.12 -19.26 -0.27 -9.01 16 24 O -0.52 -6.27 12.68 -40.59 -0.51 -6.79 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.09 1.35 5.85 -51.93 -0.30 1.05 16 27 H 0.06 0.79 8.04 -51.93 -0.42 0.38 16 28 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 29 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.14 3.30 6.24 -52.48 -0.33 2.97 16 32 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 33 H 0.14 2.89 6.80 -52.49 -0.36 2.53 16 34 H 0.13 1.95 7.61 -52.48 -0.40 1.55 16 35 H 0.41 2.87 9.11 45.56 0.42 3.28 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -27.27 304.08 -7.94 -35.21 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -2.57 Total: 11.58 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -4.63 Total: -19.06 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: 0.50 Total: -28.63 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.79 Total: -15.80 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.27 -7.94 -35.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243210694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.953 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds