Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37672 * 120.01115 * 2 1 4 4 C 1.39490 * 120.03019 * 179.97438 * 3 2 1 5 5 C 1.48297 * 119.97158 * 180.02562 * 4 3 2 6 6 C 1.39769 * 120.41176 * 359.72205 * 5 4 3 7 7 N 1.31903 * 121.13602 * 179.71749 * 6 5 4 8 8 C 1.31531 * 122.12814 * 0.55182 * 7 6 5 9 9 C 1.40769 * 120.68446 * 359.73823 * 8 7 6 10 10 C 1.41439 * 120.60412 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99709 * 24.22662 * 10 9 8 12 12 C 1.39935 * 120.00067 * 204.22107 * 10 9 8 13 13 N 1.30830 * 120.00226 * 17.36468 * 12 10 9 14 14 Si 1.86801 * 119.99842 * 197.36153 * 12 10 9 15 15 H 1.48498 * 109.47332 * 90.00276 * 14 12 10 16 16 H 1.48499 * 109.47048 * 210.00304 * 14 12 10 17 17 H 1.48504 * 109.47320 * 329.99904 * 14 12 10 18 18 C 1.39212 * 120.41777 * 179.97438 * 5 4 3 19 19 C 1.39519 * 120.05859 * 359.78778 * 4 3 2 20 20 C 1.37638 * 120.03134 * 0.46364 * 19 4 3 21 21 C 1.39732 * 120.02117 * 179.97438 * 2 1 3 22 22 C 1.47601 * 120.02942 * 0.04271 * 21 2 1 23 23 O 1.21488 * 119.99729 * 353.48410 * 22 21 2 24 24 O 1.34736 * 120.00355 * 173.48417 * 22 21 2 25 25 H 1.09000 * 109.47265 * 263.10845 * 1 2 3 26 26 H 1.08995 * 109.47583 * 23.11415 * 1 2 3 27 27 H 1.09000 * 109.47343 * 143.11550 * 1 2 3 28 28 H 1.08005 * 119.99080 * 359.97424 * 3 2 1 29 29 H 1.07996 * 119.43213 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.65497 * 179.72092 * 8 7 6 31 31 H 0.96991 * 119.99915 * 179.97438 * 13 12 10 32 32 H 1.08000 * 120.95348 * 0.02562 * 18 5 4 33 33 H 1.08001 * 119.98860 * 180.23744 * 19 4 3 34 34 H 1.08005 * 120.01528 * 179.79107 * 20 19 4 35 35 H 0.96697 * 117.00051 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1921 0.0000 4 6 3.5905 1.1926 0.0005 5 6 4.3309 2.4775 0.0011 6 6 3.6398 3.6924 -0.0047 7 7 4.2838 4.8435 0.0013 8 6 5.5974 4.9100 0.0022 9 6 6.3761 3.7374 0.0023 10 6 7.7886 3.8109 0.0028 11 1 8.2833 4.6908 0.3869 12 6 8.5450 2.7437 -0.4943 13 7 7.9820 1.8422 -1.2572 14 14 10.3587 2.6062 -0.0685 15 1 10.5161 1.8131 1.1770 16 1 11.0780 1.9320 -1.1790 17 1 10.9238 3.9644 0.1347 18 6 5.7230 2.4888 0.0022 19 6 4.2897 -0.0147 0.0056 20 6 3.6038 -1.2080 0.0003 21 6 2.2061 -1.2099 0.0005 22 6 1.4692 -2.4888 0.0002 23 8 0.2601 -2.4932 0.1188 24 8 2.1374 -3.6513 -0.1317 25 1 -0.3634 -0.1233 1.0202 26 1 -0.3634 0.9451 -0.4034 27 1 -0.3634 -0.8220 -0.6168 28 1 1.6556 2.1275 -0.0004 29 1 2.5598 3.6885 -0.0101 30 1 6.0836 5.8744 0.0026 31 1 8.5064 1.1028 -1.6020 32 1 6.2860 1.5672 0.0022 33 1 5.3697 -0.0130 0.0098 34 1 4.1454 -2.1425 0.0008 35 1 1.6117 -4.4629 -0.1266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243214892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -50.648692 kcal Electronic energy + Delta-G solvation = -20779.727524 eV Core-core repulsion = 17513.621186 eV Total energy + Delta-G solvation = -3266.106339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.46985 -39.06932 -37.87429 -36.14929 -34.24221 -33.10837 -31.99577 -30.53575 -28.93162 -27.16477 -25.70020 -24.16995 -22.56286 -21.91073 -20.96155 -19.74264 -18.07651 -17.50506 -17.16180 -15.86303 -15.70995 -15.49042 -15.15840 -14.84586 -14.27505 -13.86260 -13.47912 -13.32685 -13.13190 -12.90433 -12.66037 -12.20151 -12.06366 -11.81862 -11.66422 -11.53501 -11.47066 -11.38396 -11.25458 -10.78033 -10.56883 -10.15971 -9.92936 -9.52440 -9.39198 -8.56762 -8.27576 -8.02977 -7.44637 -6.99085 -4.64070 0.72001 1.62554 2.27161 2.64982 2.95250 2.98357 3.00155 3.07581 3.08898 3.75163 4.05372 4.49249 4.92468 4.97424 5.15668 5.24871 5.49864 5.52294 5.65548 5.78304 5.84254 5.90640 5.95711 6.09371 6.24691 6.35462 6.44741 6.51423 6.57993 6.63859 6.70277 6.91117 6.96585 7.04598 7.15435 7.49657 7.67722 7.74426 7.92088 8.24826 8.50948 8.53778 9.45283 9.91738 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.004488 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.573095 B = 6237.951800 C = 7541.482880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.015 4.015 3 C -0.140 4.140 4 C 0.042 3.958 5 C -0.108 4.108 6 C -0.017 4.017 7 N -0.470 5.470 8 C -0.011 4.011 9 C 0.059 3.941 10 C -0.448 4.448 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.790 5.790 14 Si 0.914 3.086 15 H -0.266 1.266 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.107 4.107 19 C -0.138 4.138 20 C -0.053 4.053 21 C -0.162 4.162 22 C 0.529 3.471 23 O -0.519 6.519 24 O -0.515 6.515 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.286 0.714 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 -8.711 1.446 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.015 4.015 3 C -0.158 4.158 4 C 0.041 3.959 5 C -0.110 4.110 6 C -0.175 4.175 7 N -0.176 5.176 8 C -0.172 4.172 9 C 0.055 3.945 10 C -0.478 4.478 11 H 0.104 0.896 12 C -0.144 4.144 13 N -0.414 5.414 14 Si 0.738 3.262 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.183 1.183 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.071 4.071 21 C -0.163 4.163 22 C 0.376 3.624 23 O -0.410 6.410 24 O -0.326 6.326 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.277 -7.790 1.325 10.091 hybrid contribution 1.113 -1.513 0.041 1.878 sum -5.165 -9.302 1.366 10.727 Atomic orbital electron populations 1.21077 0.90301 1.02931 1.03283 1.19840 0.96365 0.91156 0.94165 1.21091 0.93480 0.97330 1.03870 1.19298 0.92616 0.93249 0.90740 1.19480 0.94401 0.91821 1.05296 1.21837 0.97913 0.87176 1.10618 1.66970 1.11226 1.29013 1.10439 1.22613 0.88656 0.97403 1.08507 1.18480 0.94546 0.91634 0.89872 1.19594 0.90690 1.02345 1.35141 0.89622 1.25982 1.01724 0.94446 0.92278 1.69767 1.39112 1.10661 1.21878 0.86206 0.81004 0.79873 0.79167 1.19049 1.20097 1.18346 1.21903 0.91201 0.99296 1.00830 1.21361 1.01119 0.91109 1.02009 1.21285 0.92385 0.98699 0.94734 1.18746 0.93545 0.89368 1.14628 1.21003 0.85345 0.84171 0.71908 1.90817 1.15428 1.87666 1.47112 1.84605 1.45452 1.17124 1.85444 0.90796 0.92046 0.89359 0.84796 0.85824 0.85367 0.90343 0.84798 0.84467 0.84896 0.73340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.70 36.00 0.31 -1.28 16 2 C -0.01 -0.23 5.91 -104.27 -0.62 -0.85 16 3 C -0.14 -2.31 9.04 -39.32 -0.36 -2.67 16 4 C 0.04 0.79 5.88 -104.82 -0.62 0.17 16 5 C -0.11 -2.36 5.89 -104.83 -0.62 -2.98 16 6 C -0.02 -0.38 10.60 -16.95 -0.18 -0.56 16 7 N -0.47 -11.16 10.32 -12.27 -0.13 -11.29 16 8 C -0.01 -0.26 10.96 -16.72 -0.18 -0.45 16 9 C 0.06 1.47 5.58 -106.71 -0.60 0.88 16 10 C -0.45 -10.91 9.08 -37.73 -0.34 -11.25 16 11 H 0.09 1.98 7.90 -52.49 -0.41 1.57 16 12 C 0.07 1.71 5.18 -17.34 -0.09 1.62 16 13 N -0.79 -18.59 10.95 55.55 0.61 -17.99 16 14 Si 0.91 17.16 29.59 -169.99 -5.03 12.13 16 15 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 16 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 C -0.11 -2.56 8.16 -38.21 -0.31 -2.87 16 19 C -0.14 -2.40 9.41 -39.32 -0.37 -2.77 16 20 C -0.05 -0.80 9.60 -39.23 -0.38 -1.18 16 21 C -0.16 -2.46 5.88 -104.94 -0.62 -3.07 16 22 C 0.53 7.28 8.19 34.55 0.28 7.56 16 23 O -0.52 -7.85 14.12 -19.26 -0.27 -8.12 16 24 O -0.51 -5.45 12.69 -40.59 -0.52 -5.97 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 27 H 0.09 1.23 5.87 -51.93 -0.31 0.92 16 28 H 0.13 2.03 6.19 -52.48 -0.32 1.70 16 29 H 0.12 2.37 6.18 -52.49 -0.32 2.05 16 30 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 31 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 32 H 0.13 3.18 4.47 -52.49 -0.23 2.95 16 33 H 0.14 2.44 6.24 -52.49 -0.33 2.11 16 34 H 0.13 1.72 7.62 -52.48 -0.40 1.32 16 35 H 0.41 2.30 9.11 45.56 0.42 2.72 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -27.96 303.17 -7.75 -35.71 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -2.31 Total: 10.65 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -4.67 Total: -19.69 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.48 Total: -29.27 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.79 Total: -14.09 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.96 -7.75 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243214892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.936 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds