Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86806 * 120.00187 * 2 1 4 4 H 1.48499 * 109.46986 * 270.00482 * 3 2 1 5 5 H 1.48500 * 109.46832 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46941 * 150.00122 * 3 2 1 7 7 C 1.38655 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00326 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00083 * 180.02562 * 7 2 1 10 10 C 1.35638 * 116.99842 * 185.07445 * 9 7 2 11 11 C 1.38756 * 120.14311 * 354.38706 * 10 9 7 12 12 C 1.38108 * 120.05561 * 180.02562 * 11 10 9 13 13 C 1.38482 * 120.35001 * 359.97438 * 12 11 10 14 14 C 1.37963 * 120.28276 * 359.74716 * 13 12 11 15 15 C 1.39409 * 119.93760 * 0.52914 * 14 13 12 16 16 C 1.48053 * 120.17289 * 179.74333 * 15 14 13 17 17 C 1.39285 * 120.20336 * 64.72741 * 16 15 14 18 18 C 1.37996 * 120.01374 * 179.97438 * 17 16 15 19 19 C 1.38539 * 120.45002 * 0.02562 * 18 17 16 20 20 C 1.37931 * 120.42244 * 359.97438 * 19 18 17 21 21 C 1.39545 * 119.97015 * 0.30383 * 20 19 18 22 22 C 1.47399 * 120.22050 * 179.72176 * 21 20 19 23 23 N 1.29438 * 119.99669 * 179.97438 * 22 21 20 24 24 O 1.41604 * 119.99626 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.97113 * 359.97438 * 11 10 9 27 27 H 1.07997 * 119.82497 * 179.97438 * 12 11 10 28 28 H 1.07995 * 119.85403 * 180.02562 * 13 12 11 29 29 H 1.08007 * 120.03256 * 180.25473 * 14 13 12 30 30 H 1.07996 * 119.99850 * 359.95255 * 17 16 15 31 31 H 1.08001 * 119.77717 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.79526 * 179.97438 * 19 18 17 33 33 H 1.07998 * 120.01455 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00358 * 359.97438 * 22 21 20 35 35 H 0.96698 * 113.99932 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9727 -2.4046 -0.1075 11 6 3.2250 -3.5733 -0.0945 12 6 3.8539 -4.7981 -0.2035 13 6 5.2314 -4.8688 -0.3268 14 6 5.9882 -3.7154 -0.3470 15 6 5.3663 -2.4731 -0.2320 16 6 6.1739 -1.2323 -0.2474 17 6 6.8855 -0.8736 -1.3897 18 6 7.6366 0.2840 -1.4000 19 6 7.6899 1.0962 -0.2789 20 6 6.9924 0.7586 0.8621 21 6 6.2320 -0.4111 0.8937 22 6 5.4893 -0.7804 2.1122 23 7 4.7849 -1.8661 2.1366 24 8 4.0718 -2.2211 3.3074 25 1 -0.4850 0.8400 -0.0004 26 1 2.1504 -3.5253 0.0017 27 1 3.2683 -5.7054 -0.1926 28 1 5.7149 -5.8307 -0.4119 29 1 7.0619 -3.7751 -0.4475 30 1 6.8499 -1.5017 -2.2675 31 1 8.1866 0.5587 -2.2879 32 1 8.2814 1.9996 -0.2984 33 1 7.0383 1.3968 1.7321 34 1 5.5328 -0.1452 2.9846 35 1 3.5752 -3.0472 3.2301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = 50.133287 kcal Electronic energy + Delta-G solvation = -22242.635193 eV Core-core repulsion = 18980.899089 eV Total energy + Delta-G solvation = -3261.736104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.72559 -38.31876 -36.39237 -36.22393 -33.31258 -32.36951 -31.90544 -29.83317 -29.20349 -28.27424 -25.21472 -23.61719 -22.75404 -21.21226 -20.97198 -19.68369 -17.81186 -17.33504 -17.28970 -16.16920 -15.35168 -15.01662 -14.71842 -14.47476 -14.08043 -13.84727 -13.69600 -13.63750 -13.14468 -13.02255 -12.79818 -12.41639 -12.18095 -12.17832 -11.46149 -11.35396 -11.05082 -10.77630 -10.72066 -10.62883 -10.16121 -9.93380 -9.54401 -9.35815 -8.81018 -8.62499 -8.17052 -7.90770 -7.08524 -6.40461 -4.04934 1.13403 1.57613 2.18324 2.39535 2.91573 3.21968 3.26217 3.41787 3.55074 4.15252 4.25228 4.55710 4.90259 5.01377 5.11322 5.11499 5.23806 5.24340 5.53567 5.63489 5.75722 5.80638 5.93456 6.00758 6.19535 6.26753 6.32716 6.51655 6.62696 6.68592 6.79988 6.85553 7.10241 7.16233 7.22311 7.29891 7.37368 7.66266 7.82260 8.06792 8.19497 8.96183 9.61745 10.67341 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.009995 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.485888 B = 2800.636409 C = 3876.923085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.383 4.383 8 H 0.105 0.895 9 O -0.206 6.206 10 C 0.216 3.784 11 C -0.230 4.230 12 C -0.069 4.069 13 C -0.213 4.213 14 C -0.059 4.059 15 C -0.123 4.123 16 C 0.022 3.978 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.134 4.134 20 C -0.094 4.094 21 C -0.038 4.038 22 C 0.123 3.877 23 N -0.275 5.275 24 O -0.419 6.419 25 H 0.278 0.722 26 H 0.130 0.870 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.544 -1.785 0.326 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.459 4.459 8 H 0.122 0.878 9 O -0.110 6.110 10 C 0.162 3.838 11 C -0.249 4.249 12 C -0.087 4.087 13 C -0.231 4.231 14 C -0.078 4.078 15 C -0.124 4.124 16 C 0.020 3.980 17 C -0.135 4.135 18 C -0.129 4.129 19 C -0.152 4.152 20 C -0.114 4.114 21 C -0.039 4.039 22 C -0.087 4.087 23 N -0.014 5.014 24 O -0.327 6.327 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.321 -1.670 0.168 13.426 hybrid contribution -0.269 0.813 0.578 1.034 sum 13.052 -0.856 0.747 13.101 Atomic orbital electron populations 1.69643 1.05530 1.28319 1.48362 1.24405 0.94923 0.98607 0.95777 0.86305 0.80659 0.81839 0.79060 1.19925 1.20993 1.17932 1.20721 0.77076 0.96383 1.51701 0.87808 1.83571 1.22211 1.25796 1.79383 1.18766 0.90154 0.85366 0.89496 1.21117 1.00766 0.91814 1.11241 1.20798 0.94250 0.96524 0.97158 1.20462 0.93959 0.97010 1.11714 1.20575 0.98120 0.90872 0.98221 1.17630 0.90057 0.91814 1.12915 1.18825 0.93736 0.93436 0.92032 1.21217 0.97508 0.97288 0.97482 1.21114 0.98938 0.94709 0.98102 1.20943 1.00883 1.00049 0.93345 1.21076 0.96458 0.95230 0.98645 1.18475 0.98085 0.95655 0.91713 1.24015 0.93957 0.94252 0.96436 1.77095 1.03158 1.16656 1.04505 1.88335 1.65642 1.47053 1.31636 0.91191 0.85243 0.87580 0.87679 0.87254 0.85715 0.86117 0.86035 0.85778 0.86950 0.75047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 2 C 0.07 1.86 5.49 -17.52 -0.10 1.77 16 3 Si 0.90 22.16 28.62 -169.99 -4.86 17.30 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.38 -10.69 9.95 30.89 0.31 -10.38 16 8 H 0.10 2.97 5.44 -52.49 -0.29 2.69 16 9 O -0.21 -5.30 6.74 0.45 0.00 -5.30 16 10 C 0.22 4.88 4.30 -38.70 -0.17 4.72 16 11 C -0.23 -4.88 9.16 -39.44 -0.36 -5.24 16 12 C -0.07 -1.23 10.03 -39.54 -0.40 -1.63 16 13 C -0.21 -3.56 10.03 -39.59 -0.40 -3.96 16 14 C -0.06 -1.04 9.73 -39.25 -0.38 -1.42 16 15 C -0.12 -2.44 3.83 -104.75 -0.40 -2.84 16 16 C 0.02 0.41 4.97 -104.55 -0.52 -0.11 16 17 C -0.12 -1.85 9.72 -39.28 -0.38 -2.24 16 18 C -0.11 -1.48 10.02 -39.56 -0.40 -1.87 16 19 C -0.13 -1.77 10.02 -39.58 -0.40 -2.17 16 20 C -0.09 -1.41 9.78 -39.21 -0.38 -1.79 16 21 C -0.04 -0.69 5.69 -104.75 -0.60 -1.29 16 22 C 0.12 2.38 10.43 -14.83 -0.15 2.22 16 23 N -0.27 -5.67 6.73 32.09 0.22 -5.45 16 24 O -0.42 -8.10 14.95 -11.47 -0.17 -8.27 16 25 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.40 6.41 9.28 45.56 0.42 6.83 16 LS Contribution 308.61 15.07 4.65 4.65 Total: -1.00 -31.62 308.61 -6.79 -38.41 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -2.68 Total: 9.77 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -4.72 Total: -26.23 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.99 Total: -30.33 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.17 Total: -13.57 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.62 -6.79 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.546 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds