Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86806 * 120.00187 * 2 1 4 4 H 1.48499 * 109.46986 * 270.00482 * 3 2 1 5 5 H 1.48500 * 109.46832 * 29.99982 * 3 2 1 6 6 H 1.48498 * 109.46941 * 150.00122 * 3 2 1 7 7 C 1.38655 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00326 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00083 * 180.02562 * 7 2 1 10 10 C 1.35638 * 116.99842 * 185.07445 * 9 7 2 11 11 C 1.38756 * 120.14311 * 354.38706 * 10 9 7 12 12 C 1.38108 * 120.05561 * 180.02562 * 11 10 9 13 13 C 1.38482 * 120.35001 * 359.97438 * 12 11 10 14 14 C 1.37963 * 120.28276 * 359.74716 * 13 12 11 15 15 C 1.39409 * 119.93760 * 0.52914 * 14 13 12 16 16 C 1.48053 * 120.17289 * 179.74333 * 15 14 13 17 17 C 1.39285 * 120.20336 * 64.72741 * 16 15 14 18 18 C 1.37996 * 120.01374 * 179.97438 * 17 16 15 19 19 C 1.38539 * 120.45002 * 0.02562 * 18 17 16 20 20 C 1.37931 * 120.42244 * 359.97438 * 19 18 17 21 21 C 1.39545 * 119.97015 * 0.30383 * 20 19 18 22 22 C 1.47399 * 120.22050 * 179.72176 * 21 20 19 23 23 N 1.29438 * 119.99669 * 179.97438 * 22 21 20 24 24 O 1.41604 * 119.99626 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99829 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.97113 * 359.97438 * 11 10 9 27 27 H 1.07997 * 119.82497 * 179.97438 * 12 11 10 28 28 H 1.07995 * 119.85403 * 180.02562 * 13 12 11 29 29 H 1.08007 * 120.03256 * 180.25473 * 14 13 12 30 30 H 1.07996 * 119.99850 * 359.95255 * 17 16 15 31 31 H 1.08001 * 119.77717 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.79526 * 179.97438 * 19 18 17 33 33 H 1.07998 * 120.01455 * 180.02562 * 20 19 18 34 34 H 1.07999 * 120.00358 * 359.97438 * 22 21 20 35 35 H 0.96698 * 113.99932 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9727 -2.4046 -0.1075 11 6 3.2250 -3.5733 -0.0945 12 6 3.8539 -4.7981 -0.2035 13 6 5.2314 -4.8688 -0.3268 14 6 5.9882 -3.7154 -0.3470 15 6 5.3663 -2.4731 -0.2320 16 6 6.1739 -1.2323 -0.2474 17 6 6.8855 -0.8736 -1.3897 18 6 7.6366 0.2840 -1.4000 19 6 7.6899 1.0962 -0.2789 20 6 6.9924 0.7586 0.8621 21 6 6.2320 -0.4111 0.8937 22 6 5.4893 -0.7804 2.1122 23 7 4.7849 -1.8661 2.1366 24 8 4.0718 -2.2211 3.3074 25 1 -0.4850 0.8400 -0.0004 26 1 2.1504 -3.5253 0.0017 27 1 3.2683 -5.7054 -0.1926 28 1 5.7149 -5.8307 -0.4119 29 1 7.0619 -3.7751 -0.4475 30 1 6.8499 -1.5017 -2.2675 31 1 8.1866 0.5587 -2.2879 32 1 8.2814 1.9996 -0.2984 33 1 7.0383 1.3968 1.7321 34 1 5.5328 -0.1452 2.9846 35 1 3.5752 -3.0472 3.2301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = 30.660099 kcal Electronic energy + Delta-G solvation = -22243.479614 eV Core-core repulsion = 18980.899089 eV Total energy + Delta-G solvation = -3262.580525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19471 -39.71476 -38.00641 -37.66907 -34.68925 -34.37361 -33.25347 -31.09936 -30.73941 -29.66964 -27.17265 -24.94104 -24.03217 -22.83102 -22.35297 -21.01127 -19.71091 -18.96483 -18.75879 -17.50150 -16.69966 -16.58758 -16.24083 -15.96040 -15.62774 -15.43046 -15.18727 -15.15867 -14.59228 -14.28388 -14.26602 -14.08682 -14.02372 -13.51133 -13.07320 -12.73379 -12.54106 -12.33212 -12.26402 -12.08255 -11.83761 -11.32836 -11.20832 -11.03328 -10.80390 -9.86557 -9.49501 -9.31166 -8.67080 -8.49046 -6.16410 -0.13081 0.37128 0.72682 0.90222 1.25028 1.29487 1.46430 1.58490 2.16915 2.25512 2.80795 2.96360 3.19634 3.23762 3.70394 3.85583 4.10558 4.23453 4.28205 4.32805 4.43740 4.60111 4.63929 4.67996 4.78275 5.01691 5.03487 5.13664 5.27020 5.44735 5.48002 5.59029 5.61180 5.71671 5.82504 5.84038 5.88612 5.96898 6.11115 6.34431 6.79653 6.88113 7.70047 8.63080 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.009995 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.485888 B = 2800.636409 C = 3876.923085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.381 4.381 8 H 0.077 0.923 9 O -0.228 6.228 10 C 0.186 3.814 11 C -0.249 4.249 12 C -0.072 4.072 13 C -0.190 4.190 14 C -0.064 4.064 15 C -0.115 4.115 16 C -0.012 4.012 17 C -0.128 4.128 18 C -0.100 4.100 19 C -0.126 4.126 20 C -0.096 4.096 21 C -0.068 4.068 22 C 0.118 3.882 23 N -0.303 5.303 24 O -0.432 6.432 25 H 0.281 0.719 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.427 -1.318 -0.595 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.458 4.458 8 H 0.095 0.905 9 O -0.134 6.134 10 C 0.136 3.864 11 C -0.268 4.268 12 C -0.090 4.090 13 C -0.208 4.208 14 C -0.082 4.082 15 C -0.116 4.116 16 C -0.014 4.014 17 C -0.146 4.146 18 C -0.118 4.118 19 C -0.144 4.144 20 C -0.116 4.116 21 C -0.069 4.069 22 C -0.091 4.091 23 N -0.043 5.043 24 O -0.340 6.340 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.151 0.849 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 17.234 -1.251 -0.748 17.296 hybrid contribution -1.198 0.455 0.814 1.518 sum 16.036 -0.796 0.066 16.056 Atomic orbital electron populations 1.69731 1.06781 1.29084 1.51276 1.25113 0.95684 1.01606 0.96181 0.85418 0.79287 0.78329 0.79163 1.19345 1.19956 1.18142 1.20614 0.78578 0.95537 1.51034 0.90529 1.83529 1.20337 1.27329 1.82187 1.19196 0.91496 0.84778 0.90939 1.21113 0.99664 0.93333 1.12680 1.21089 0.95364 0.96096 0.96494 1.20968 0.93259 0.98637 1.07950 1.21027 0.99797 0.90129 0.97241 1.17985 0.88995 0.93807 1.10828 1.18997 0.95213 0.93641 0.93592 1.21434 0.97638 0.98636 0.96861 1.21585 0.97541 0.93217 0.99505 1.21460 0.99782 1.00925 0.92186 1.21471 0.95542 0.94219 1.00415 1.18696 0.99648 0.97299 0.91303 1.24521 0.93075 0.93954 0.97585 1.77104 1.04420 1.18127 1.04692 1.88285 1.66022 1.47846 1.31887 0.90995 0.88015 0.84871 0.83688 0.84167 0.84714 0.82383 0.82048 0.83406 0.85644 0.74113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.96 21.61 0.30 -56.35 16 2 C 0.01 0.69 5.49 84.83 0.47 1.16 16 3 Si 0.95 46.83 28.62 68.60 1.96 48.79 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.38 -22.49 9.95 67.92 0.68 -21.82 16 8 H 0.08 4.79 5.44 -2.91 -0.02 4.77 16 9 O -0.23 -12.16 6.74 -21.31 -0.14 -12.30 16 10 C 0.19 8.65 4.30 22.84 0.10 8.75 16 11 C -0.25 -10.95 9.16 22.36 0.20 -10.75 16 12 C -0.07 -2.51 10.03 22.30 0.22 -2.29 16 13 C -0.19 -5.77 10.03 22.26 0.22 -5.55 16 14 C -0.06 -2.06 9.73 22.49 0.22 -1.85 16 15 C -0.11 -4.48 3.83 -19.95 -0.08 -4.55 16 16 C -0.01 -0.44 4.97 -19.82 -0.10 -0.54 16 17 C -0.13 -3.68 9.72 22.46 0.22 -3.47 16 18 C -0.10 -2.23 10.02 22.28 0.22 -2.01 16 19 C -0.13 -2.72 10.02 22.27 0.22 -2.50 16 20 C -0.10 -2.58 9.78 22.51 0.22 -2.36 16 21 C -0.07 -2.39 5.69 -19.94 -0.11 -2.50 16 22 C 0.12 4.55 10.43 87.46 0.91 5.46 16 23 N -0.30 -12.75 6.73 -52.38 -0.35 -13.10 16 24 O -0.43 -17.38 14.95 -38.79 -0.58 -17.96 16 25 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.10 4.98 5.64 -2.91 -0.02 4.96 16 27 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.13 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.41 13.94 9.28 -74.06 -0.69 13.25 16 Total: -1.00 -72.73 308.61 5.25 -67.48 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.44 Total: 28.26 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 3.62 Total: -44.81 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -0.05 Total: -69.45 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.72 Total: -30.26 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.96 Total: 48.79 kcal Total: -72.73 5.25 -67.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.141 kcal (2) G-P(sol) polarization free energy of solvation -72.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds