Wall clock time and date at job start Tue Mar 31 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86806 * 119.99669 * 2 1 4 4 H 1.48499 * 109.46916 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47250 * 299.99998 * 3 2 1 6 6 H 1.48498 * 109.46935 * 60.00150 * 3 2 1 7 7 C 1.38643 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00555 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.35658 * 117.00062 * 185.06612 * 9 7 2 11 11 C 1.38765 * 120.13460 * 354.39767 * 10 9 7 12 12 C 1.38105 * 120.04888 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32402 * 359.97438 * 12 11 10 14 14 C 1.38020 * 120.27021 * 0.02562 * 13 12 11 15 15 C 1.39279 * 119.94237 * 359.97438 * 14 13 12 16 16 C 1.48302 * 120.15492 * 180.02562 * 15 14 13 17 17 C 1.39509 * 120.05534 * 129.98297 * 16 15 14 18 18 C 1.38098 * 120.17599 * 179.97438 * 17 16 15 19 19 C 1.38067 * 120.28407 * 359.97438 * 18 17 16 20 20 C 1.39662 * 120.10572 * 0.04055 * 19 18 17 21 21 C 1.47660 * 120.08582 * 179.97438 * 20 19 18 22 22 N 1.29323 * 120.00199 * 0.02562 * 21 20 19 23 23 O 1.41601 * 120.00304 * 179.97438 * 22 21 20 24 24 C 1.39124 * 120.05680 * 309.69742 * 16 15 14 25 25 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.97757 * 359.97438 * 11 10 9 27 27 H 1.07998 * 119.84404 * 179.71922 * 12 11 10 28 28 H 1.07997 * 119.87007 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.02586 * 179.97438 * 14 13 12 30 30 H 1.08005 * 119.90897 * 359.94859 * 17 16 15 31 31 H 1.08008 * 119.85576 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.94510 * 180.02562 * 19 18 17 33 33 H 1.07999 * 119.99855 * 180.02562 * 21 20 19 34 34 H 0.96691 * 114.00553 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.13378 * 0.02791 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3349 -2.3682 -0.0016 10 6 2.0696 -3.5037 0.1047 11 6 3.4558 -3.4402 0.0913 12 6 4.2020 -4.5973 0.1990 13 6 3.5742 -5.8251 0.3214 14 6 2.1964 -5.9036 0.3362 15 6 1.4328 -4.7438 0.2283 16 6 -0.0480 -4.8226 0.2443 17 6 -0.7824 -3.9994 1.0983 18 6 -2.1614 -4.0703 1.1149 19 6 -2.8231 -4.9551 0.2869 20 6 -2.0997 -5.7849 -0.5726 21 6 -2.8077 -6.7314 -1.4576 22 7 -4.0994 -6.7924 -1.4378 23 8 -4.7784 -7.6996 -2.2869 24 6 -0.7076 -5.7133 -0.5966 25 1 -0.4850 0.8400 -0.0004 26 1 3.9514 -2.4855 -0.0044 27 1 5.2806 -4.5446 0.1836 28 1 4.1650 -6.7253 0.4047 29 1 1.7107 -6.8635 0.4314 30 1 -0.2709 -3.3051 1.7486 31 1 -2.7248 -3.4308 1.7785 32 1 -3.9018 -5.0057 0.3040 33 1 -2.2469 -7.3727 -2.1213 34 1 -5.7412 -7.6733 -2.2011 35 1 -0.1432 -6.3495 -1.2624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:30 Heat of formation + Delta-G solvation = 31.752721 kcal Electronic energy + Delta-G solvation = -20713.485567 eV Core-core repulsion = 17450.952422 eV Total energy + Delta-G solvation = -3262.533145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.52575 -38.37838 -36.77367 -36.34653 -33.61767 -32.37423 -31.79437 -29.95175 -29.17880 -28.02439 -25.43136 -23.60477 -22.85744 -21.39945 -21.06329 -19.52871 -18.02425 -17.67172 -17.06817 -16.12909 -15.43342 -15.11790 -14.72233 -14.64990 -14.15884 -14.03085 -13.73479 -13.59178 -13.44288 -12.98819 -12.81126 -12.63674 -12.24559 -11.74835 -11.42833 -11.29497 -11.00707 -10.87516 -10.72488 -10.53068 -10.47633 -10.22117 -9.94182 -9.40989 -8.92551 -8.71151 -8.21201 -7.84153 -7.18135 -6.51037 -4.09623 1.10275 1.59986 2.23443 2.33142 2.71879 3.02838 3.08716 3.10430 3.15541 3.90849 4.26242 4.54597 4.80731 5.03038 5.15412 5.21578 5.33792 5.55062 5.59899 5.60969 5.75984 5.88950 5.94653 6.02639 6.17246 6.36500 6.41937 6.53018 6.62473 6.71398 6.88739 6.92535 7.01140 7.11110 7.16302 7.30572 7.35155 7.45074 7.69269 7.73679 7.92692 8.94101 9.61935 10.65535 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.005059 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.619020 B = 5533.743015 C = 7001.888980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.164 6.164 10 C 0.165 3.835 11 C -0.233 4.233 12 C -0.069 4.069 13 C -0.215 4.215 14 C -0.060 4.060 15 C -0.137 4.137 16 C -0.016 4.016 17 C -0.053 4.053 18 C -0.123 4.123 19 C -0.087 4.087 20 C -0.079 4.079 21 C 0.163 3.837 22 N -0.344 5.344 23 O -0.421 6.421 24 C -0.081 4.081 25 H 0.270 0.730 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.402 0.598 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -9.496 0.515 9.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.471 4.471 8 H 0.110 0.890 9 O -0.067 6.067 10 C 0.110 3.890 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.234 4.234 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.016 4.016 17 C -0.072 4.072 18 C -0.141 4.141 19 C -0.107 4.107 20 C -0.080 4.080 21 C -0.046 4.046 22 N -0.086 5.086 23 O -0.328 6.328 24 C -0.102 4.102 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.249 0.751 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.299 -9.116 0.644 9.423 hybrid contribution 0.550 0.530 -0.542 0.936 sum -1.749 -8.585 0.102 8.762 Atomic orbital electron populations 1.70047 1.05834 1.27622 1.45295 1.25256 0.95824 0.98722 0.96410 0.85682 0.79200 0.80484 0.78296 1.19109 1.20149 1.20118 1.21391 0.91876 0.80790 1.53089 0.89014 1.83981 1.34058 1.11216 1.77396 1.19309 0.90036 0.87463 0.92163 1.21130 0.93547 0.99157 1.11437 1.20827 0.98560 0.92397 0.96963 1.20529 0.94175 0.97008 1.11713 1.20721 0.93445 0.95965 0.97650 1.17809 0.90959 0.91264 1.13827 1.18490 0.92096 0.95527 0.95456 1.21473 0.93570 0.95573 0.96609 1.21007 0.94495 0.98729 0.99914 1.21231 0.99696 0.94841 0.94939 1.18105 0.92528 0.98497 0.98912 1.24335 0.91154 0.94494 0.94655 1.76458 1.10883 1.09573 1.11667 1.88403 1.25028 1.58441 1.60920 1.21187 0.92105 0.98670 0.98197 0.92014 0.85362 0.87444 0.87457 0.86806 0.85276 0.85897 0.85792 0.86349 0.75059 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.83 13.67 55.48 0.76 -23.07 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.40 -10.49 9.49 30.88 0.29 -10.19 16 8 H 0.09 2.27 5.21 -52.49 -0.27 2.00 16 9 O -0.16 -4.36 8.10 0.35 0.00 -4.36 16 10 C 0.17 3.78 6.55 -38.74 -0.25 3.53 16 11 C -0.23 -4.85 9.16 -39.44 -0.36 -5.21 16 12 C -0.07 -1.21 10.03 -39.55 -0.40 -1.61 16 13 C -0.22 -3.54 10.03 -39.59 -0.40 -3.94 16 14 C -0.06 -1.02 9.51 -39.27 -0.37 -1.40 16 15 C -0.14 -2.76 5.48 -104.73 -0.57 -3.33 16 16 C -0.02 -0.30 5.27 -104.95 -0.55 -0.85 16 17 C -0.05 -1.05 8.78 -39.16 -0.34 -1.39 16 18 C -0.12 -2.14 10.02 -39.70 -0.40 -2.54 16 19 C -0.09 -1.42 9.57 -39.11 -0.37 -1.79 16 20 C -0.08 -1.26 5.86 -105.08 -0.62 -1.88 16 21 C 0.16 2.36 10.90 -14.76 -0.16 2.20 16 22 N -0.34 -5.08 11.22 32.14 0.36 -4.72 16 23 O -0.42 -5.36 14.95 -11.47 -0.17 -5.53 16 24 C -0.08 -1.35 9.25 -38.81 -0.36 -1.71 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 27 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.11 1.64 8.04 -52.49 -0.42 1.22 16 30 H 0.13 2.75 7.68 -52.48 -0.40 2.35 16 31 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.12 1.84 7.54 -52.48 -0.40 1.44 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.40 3.08 9.28 45.56 0.42 3.50 16 35 H 0.12 1.78 8.04 -52.48 -0.42 1.35 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -30.44 316.20 -6.89 -37.33 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -2.62 Total: 9.86 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -4.97 Total: -29.07 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 1.12 Total: -27.79 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.17 Total: -9.89 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.44 -6.89 -37.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.081 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds