Wall clock time and date at job start Tue Mar 31 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48501 * 109.46926 * 270.00090 * 3 2 1 5 5 H 1.48496 * 109.46741 * 30.00073 * 3 2 1 6 6 H 1.48503 * 109.46974 * 149.99962 * 3 2 1 7 7 C 1.38660 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 180.02562 * 7 2 1 9 9 O 1.34809 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.35674 * 116.99909 * 174.61016 * 9 7 2 11 11 C 1.39035 * 119.94101 * 174.31362 * 10 9 7 12 12 C 1.37783 * 120.06538 * 180.24833 * 11 10 9 13 13 C 1.39553 * 119.93868 * 359.45858 * 12 11 10 14 14 C 1.48092 * 120.06607 * 180.27485 * 13 12 11 15 15 C 1.39261 * 120.20579 * 238.64063 * 14 13 12 16 16 C 1.38013 * 120.01768 * 179.69470 * 15 14 13 17 17 C 1.38531 * 120.44215 * 0.60036 * 16 15 14 18 18 C 1.37932 * 120.42242 * 359.67160 * 17 16 15 19 19 C 1.39548 * 119.96559 * 0.02611 * 18 17 16 20 20 C 1.47410 * 120.21738 * 179.97438 * 19 18 17 21 21 N 1.29432 * 120.00003 * 185.71563 * 20 19 18 22 22 O 1.41599 * 119.99876 * 179.97438 * 21 20 19 23 23 C 1.39547 * 119.87111 * 0.54116 * 13 12 11 24 24 C 1.37786 * 119.94243 * 359.72773 * 23 13 12 25 25 H 0.96995 * 120.00188 * 0.02562 * 1 2 3 26 26 H 1.08009 * 119.96473 * 359.97438 * 11 10 9 27 27 H 1.08006 * 120.03520 * 179.72061 * 12 11 10 28 28 H 1.08001 * 119.99274 * 359.97139 * 15 14 13 29 29 H 1.07994 * 119.77460 * 180.31805 * 16 15 14 30 30 H 1.07998 * 119.79187 * 179.69703 * 17 16 15 31 31 H 1.07998 * 120.01699 * 180.02562 * 18 17 16 32 32 H 1.08010 * 119.99905 * 5.71198 * 20 19 18 33 33 H 0.96699 * 113.99852 * 179.97438 * 22 21 20 34 34 H 1.08007 * 120.02787 * 179.75447 * 23 13 12 35 35 H 1.08000 * 119.97472 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0001 9 8 1.3347 -2.3683 -0.0005 10 6 2.0690 -3.5035 -0.1146 11 6 1.4510 -4.7439 -0.0028 12 6 2.1950 -5.8983 -0.1131 13 6 3.5684 -5.8218 -0.3486 14 6 4.3698 -7.0609 -0.4738 15 6 5.4381 -7.2944 0.3885 16 6 6.1785 -8.4534 0.2725 17 6 5.8747 -9.3852 -0.7066 18 6 4.8241 -9.1698 -1.5739 19 6 4.0601 -8.0069 -1.4681 20 6 2.9363 -7.7708 -2.3924 21 7 2.3006 -6.6437 -2.3638 22 8 1.2215 -6.4167 -3.2521 23 6 4.1861 -4.5755 -0.4605 24 6 3.4381 -3.4243 -0.3437 25 1 -0.4850 0.8400 -0.0004 26 1 0.3873 -4.8025 0.1752 27 1 1.7151 -6.8615 -0.0216 28 1 5.6846 -6.5704 1.1511 29 1 7.0029 -8.6328 0.9465 30 1 6.4641 -10.2862 -0.7911 31 1 4.5928 -9.9009 -2.3345 32 1 2.6435 -8.5383 -3.0937 33 1 0.8093 -5.5473 -3.1561 34 1 5.2495 -4.5134 -0.6388 35 1 3.9156 -2.4594 -0.4298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:18 Heat of formation + Delta-G solvation = 45.974597 kcal Electronic energy + Delta-G solvation = -20964.580344 eV Core-core repulsion = 17702.663906 eV Total energy + Delta-G solvation = -3261.916438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69599 -38.57232 -36.64764 -36.17687 -33.50535 -32.40322 -31.45818 -30.14086 -29.96732 -27.80290 -25.37511 -23.61794 -22.78041 -21.80276 -20.81629 -19.82742 -18.01468 -17.49705 -17.13812 -16.39366 -15.56086 -15.17027 -14.56424 -14.54127 -14.22072 -14.03651 -13.76638 -13.56031 -13.36323 -13.25519 -12.79547 -12.60956 -12.41164 -11.79141 -11.68137 -11.40277 -11.24984 -10.94512 -10.68037 -10.57369 -10.43351 -10.24875 -9.60543 -9.38450 -8.89668 -8.72858 -8.38488 -7.98679 -6.96587 -6.46850 -4.04260 0.83794 1.35436 2.26533 2.39445 2.64504 3.12484 3.13027 3.17719 3.25763 3.90948 3.95856 4.60030 4.72425 4.93519 4.98379 5.04942 5.12106 5.28505 5.34439 5.52654 5.65736 5.70313 5.80486 5.98911 6.03151 6.23994 6.32562 6.38227 6.47154 6.61594 6.73384 6.89311 6.92091 6.98295 7.10389 7.30977 7.40836 7.46088 7.85705 7.90119 7.99091 8.99244 9.70212 10.71126 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.025423 B = 0.004215 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.086997 B = 6641.078785 C = 7334.418080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.164 3.836 11 C -0.201 4.201 12 C -0.007 4.007 13 C -0.152 4.152 14 C 0.025 3.975 15 C -0.121 4.121 16 C -0.104 4.104 17 C -0.138 4.138 18 C -0.090 4.090 19 C -0.059 4.059 20 C 0.112 3.888 21 N -0.275 5.275 22 O -0.425 6.425 23 C -0.048 4.048 24 C -0.241 4.241 25 H 0.270 0.730 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.410 0.590 34 H 0.104 0.896 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 -15.085 -1.824 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.110 3.890 11 C -0.220 4.220 12 C -0.027 4.027 13 C -0.153 4.153 14 C 0.023 3.977 15 C -0.139 4.139 16 C -0.123 4.123 17 C -0.156 4.156 18 C -0.110 4.110 19 C -0.060 4.060 20 C -0.097 4.097 21 N -0.015 5.015 22 O -0.334 6.334 23 C -0.066 4.066 24 C -0.261 4.261 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.126 -14.540 -1.640 17.245 hybrid contribution 0.146 0.648 -0.552 0.864 sum 9.272 -13.892 -2.192 16.845 Atomic orbital electron populations 1.70032 1.05965 1.27696 1.45971 1.25288 0.95826 0.98837 0.96540 0.85727 0.78979 0.80118 0.78726 1.19883 1.20247 1.19161 1.21333 0.91816 0.80851 1.52634 0.89056 1.83960 1.34460 1.11571 1.77951 1.19443 0.90285 0.87761 0.91550 1.19985 0.99539 0.89871 1.12616 1.20268 0.92077 0.96127 0.94185 1.17954 0.93102 0.90715 1.13529 1.19054 0.93402 0.92890 0.92325 1.21312 0.95565 0.97643 0.99404 1.21192 0.99205 0.93981 0.97931 1.20964 0.98310 0.99855 0.96509 1.21079 0.95072 0.95801 0.99047 1.18522 0.95599 0.95795 0.96076 1.24207 0.93813 0.94757 0.96957 1.77505 0.97391 1.19210 1.07351 1.88306 1.45776 1.42102 1.57229 1.20642 0.97919 0.91177 0.96862 1.20989 0.94269 0.98563 1.12240 0.92006 0.86827 0.88155 0.85560 0.86068 0.85996 0.85719 0.86670 0.74117 0.87780 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.80 9.44 30.89 0.29 -10.51 16 8 H 0.09 2.35 5.28 -52.49 -0.28 2.07 16 9 O -0.18 -4.97 9.75 0.34 0.00 -4.97 16 10 C 0.16 3.91 6.65 -38.99 -0.26 3.65 16 11 C -0.20 -4.22 9.98 -39.45 -0.39 -4.61 16 12 C -0.01 -0.13 6.59 -39.26 -0.26 -0.39 16 13 C -0.15 -2.69 4.06 -104.88 -0.43 -3.11 16 14 C 0.03 0.38 5.40 -104.55 -0.56 -0.19 16 15 C -0.12 -1.55 9.64 -39.28 -0.38 -1.93 16 16 C -0.10 -1.08 10.02 -39.56 -0.40 -1.48 16 17 C -0.14 -1.33 10.02 -39.59 -0.40 -1.73 16 18 C -0.09 -0.95 9.78 -39.21 -0.38 -1.33 16 19 C -0.06 -0.80 5.87 -104.75 -0.62 -1.41 16 20 C 0.11 1.61 10.65 -14.83 -0.16 1.45 16 21 N -0.28 -4.61 6.92 32.09 0.22 -4.39 16 22 O -0.42 -6.80 14.95 -11.47 -0.17 -6.97 16 23 C -0.05 -0.89 9.64 -39.26 -0.38 -1.27 16 24 C -0.24 -5.24 9.12 -39.45 -0.36 -5.60 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.11 2.33 8.06 -52.48 -0.42 1.91 16 27 H 0.10 1.73 7.83 -52.48 -0.41 1.32 16 28 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.41 5.67 9.28 45.56 0.42 6.09 16 34 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.13 2.74 5.69 -52.49 -0.30 2.44 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -31.60 311.33 -6.95 -38.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.66 Total: 9.50 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -4.77 Total: -27.49 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.98 Total: -28.70 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.17 Total: -11.93 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.60 -6.95 -38.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.531 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds