Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48493 * 109.46978 * 239.99840 * 3 2 1 5 5 H 1.48501 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46906 * 120.00017 * 3 2 1 7 7 C 1.38642 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00335 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.35691 * 116.99948 * 185.05649 * 9 7 2 11 11 C 1.38997 * 119.95246 * 354.44561 * 10 9 7 12 12 C 1.37839 * 120.05411 * 179.97438 * 11 10 9 13 13 C 1.39433 * 119.94856 * 0.02562 * 12 11 10 14 14 C 1.48337 * 120.05137 * 179.97438 * 13 12 11 15 15 C 1.39496 * 120.05641 * 359.97438 * 14 13 12 16 16 C 1.38104 * 120.17010 * 179.72519 * 15 14 13 17 17 C 1.38074 * 120.27419 * 0.25181 * 16 15 14 18 18 C 1.39627 * 120.10838 * 0.05075 * 17 16 15 19 19 C 1.47864 * 120.08447 * 179.97438 * 18 17 16 20 20 N 1.34776 * 119.99625 * 359.97438 * 19 18 17 21 21 O 1.21545 * 120.00034 * 179.97438 * 19 18 17 22 22 C 1.39112 * 120.05318 * 180.29934 * 14 13 12 23 23 C 1.39435 * 119.89604 * 0.25355 * 13 12 11 24 24 C 1.37835 * 119.94520 * 359.48750 * 23 13 12 25 25 H 0.96995 * 119.99969 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.97453 * 359.96174 * 11 10 9 27 27 H 1.08001 * 120.03012 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.91187 * 0.02562 * 15 14 13 29 29 H 1.07995 * 119.86410 * 180.27644 * 16 15 14 30 30 H 1.08001 * 119.94597 * 180.02562 * 17 16 15 31 31 H 0.96999 * 120.00655 * 0.02562 * 20 19 18 32 32 H 0.97003 * 119.99371 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.13569 * 359.97437 * 22 14 13 34 34 H 1.07993 * 120.02295 * 179.72521 * 23 13 12 35 35 H 1.08001 * 119.97335 * 180.25069 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0016 10 6 2.0698 -3.5040 0.1045 11 6 3.4580 -3.4359 0.0914 12 6 4.2067 -4.5882 0.1996 13 6 3.5704 -5.8229 0.3216 14 6 4.3738 -7.0644 0.4376 15 6 5.7672 -6.9987 0.4242 16 6 6.5175 -8.1526 0.5377 17 6 5.8947 -9.3787 0.6600 18 6 4.5007 -9.4585 0.6684 19 6 3.8342 -10.7720 0.7987 20 7 4.5724 -11.8942 0.9091 21 8 2.6206 -10.8396 0.8063 22 6 3.7390 -8.2968 0.5531 23 6 2.1776 -5.8892 0.3287 24 6 1.4332 -4.7338 0.2256 25 1 -0.4850 0.8400 -0.0004 26 1 3.9505 -2.4795 -0.0037 27 1 5.2853 -4.5349 0.1898 28 1 6.2604 -6.0426 0.3297 29 1 7.5960 -8.0955 0.5313 30 1 6.4866 -10.2777 0.7488 31 1 5.5409 -11.8402 0.9034 32 1 4.1351 -12.7558 0.9950 33 1 2.6605 -8.3527 0.5591 34 1 1.6827 -6.8448 0.4186 35 1 0.3544 -4.7843 0.2351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = -18.160046 kcal Electronic energy + Delta-G solvation = -20165.876792 eV Core-core repulsion = 16901.179266 eV Total energy + Delta-G solvation = -3264.697525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20325 -39.18066 -38.19198 -36.37886 -34.03128 -32.54191 -31.53911 -31.31207 -30.13992 -27.76095 -25.49553 -24.34460 -22.88793 -21.96228 -20.90603 -19.98894 -18.32911 -18.07888 -17.28226 -16.69305 -16.10660 -15.44468 -14.85685 -14.85409 -14.60110 -14.05680 -13.98067 -13.84927 -13.74929 -13.53108 -12.87821 -12.80211 -12.48653 -11.85546 -11.68936 -11.47726 -11.44460 -10.99656 -10.90177 -10.61019 -10.47359 -10.16903 -9.93405 -9.42972 -9.27288 -8.99358 -8.72375 -8.31004 -7.04211 -6.56453 -4.13040 0.76508 1.17458 2.15927 2.29748 2.91133 3.07438 3.09737 3.11662 3.31442 3.87607 3.90327 4.59029 4.64131 4.72571 4.84344 4.99319 5.07658 5.22511 5.26635 5.44483 5.51989 5.62878 5.81393 5.95615 6.11455 6.18157 6.23968 6.32811 6.53988 6.55982 6.59832 6.78933 6.86389 6.99646 7.11541 7.18612 7.28014 7.33306 7.69713 7.88277 8.07075 8.88243 9.56346 10.60618 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.037839 B = 0.003106 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.793779 B = 9013.146269 C = 9736.404339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.161 3.839 11 C -0.236 4.236 12 C -0.050 4.050 13 C -0.167 4.167 14 C -0.002 4.002 15 C -0.106 4.106 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.135 4.135 19 C 0.564 3.436 20 N -0.854 5.854 21 O -0.540 6.540 22 C -0.071 4.071 23 C -0.054 4.054 24 C -0.192 4.192 25 H 0.273 0.727 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.400 0.600 32 H 0.403 0.597 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.616 -16.135 1.277 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.070 6.070 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.068 4.068 13 C -0.168 4.168 14 C -0.002 4.002 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.132 4.132 18 C -0.138 4.138 19 C 0.351 3.649 20 N -0.418 5.418 21 O -0.417 6.417 22 C -0.090 4.090 23 C -0.072 4.072 24 C -0.211 4.211 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.130 0.870 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.230 0.770 32 H 0.233 0.767 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.358 -15.739 1.238 20.049 hybrid contribution 0.909 0.461 0.030 1.020 sum 13.267 -15.278 1.268 20.274 Atomic orbital electron populations 1.70029 1.06057 1.28145 1.44744 1.25349 0.95882 0.99023 0.96231 0.85741 0.78738 0.79462 0.79305 1.19360 1.20154 1.19355 1.21357 0.91944 0.80701 1.52885 0.88809 1.83957 1.34669 1.11626 1.76719 1.19504 0.90313 0.87962 0.91622 1.21090 0.93705 0.98926 1.11846 1.20794 0.98409 0.91381 0.96253 1.18156 0.92686 0.91288 1.14695 1.18831 0.92741 0.92473 0.96151 1.21443 0.93290 0.98732 0.98957 1.20945 0.99801 0.92157 1.00800 1.21099 0.92994 0.97927 1.01206 1.19708 0.93802 0.93065 1.07241 1.18392 0.86698 0.84625 0.75178 1.43755 1.10984 1.09225 1.77849 1.90819 1.13762 1.87249 1.49871 1.21351 1.00707 0.90274 0.96619 1.20766 0.92593 0.97120 0.96758 1.20169 0.99805 0.90084 1.11084 0.91699 0.85213 0.87025 0.85394 0.85688 0.86266 0.77036 0.76656 0.84527 0.86421 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.67 9.48 30.88 0.29 -10.38 16 8 H 0.09 2.33 5.19 -52.49 -0.27 2.05 16 9 O -0.17 -4.68 9.75 0.25 0.00 -4.67 16 10 C 0.16 3.81 6.65 -39.02 -0.26 3.56 16 11 C -0.24 -4.96 9.15 -39.45 -0.36 -5.32 16 12 C -0.05 -0.90 9.42 -39.28 -0.37 -1.27 16 13 C -0.17 -2.93 5.88 -104.85 -0.62 -3.55 16 14 C 0.00 -0.03 5.87 -104.95 -0.62 -0.64 16 15 C -0.11 -1.32 9.42 -39.16 -0.37 -1.69 16 16 C -0.12 -1.19 10.02 -39.69 -0.40 -1.59 16 17 C -0.11 -1.10 9.54 -39.12 -0.37 -1.47 16 18 C -0.14 -1.69 5.87 -105.01 -0.62 -2.30 16 19 C 0.56 7.01 8.05 -12.32 -0.10 6.91 16 20 N -0.85 -6.29 8.82 30.53 0.27 -6.02 16 21 O -0.54 -8.93 17.18 5.33 0.09 -8.83 16 22 C -0.07 -1.04 8.97 -38.83 -0.35 -1.39 16 23 C -0.05 -0.99 9.42 -39.28 -0.37 -1.36 16 24 C -0.19 -4.04 9.98 -39.44 -0.39 -4.44 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.13 2.68 5.62 -52.49 -0.30 2.39 16 27 H 0.11 1.62 6.19 -52.49 -0.32 1.30 16 28 H 0.13 1.42 6.18 -52.49 -0.32 1.09 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 0.70 6.39 -52.49 -0.34 0.37 16 31 H 0.40 1.75 6.85 -40.82 -0.28 1.47 16 32 H 0.40 2.39 8.93 -40.82 -0.36 2.02 16 33 H 0.14 2.10 5.78 -52.49 -0.30 1.80 16 34 H 0.12 1.89 6.19 -52.49 -0.33 1.57 16 35 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -32.78 305.26 -7.10 -39.88 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -2.81 Total: 7.93 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -4.99 Total: -23.94 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 1.03 Total: -29.82 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.78 -7.10 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.717 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds