Wall clock time and date at job start Tue Mar 31 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39384 * 120.14856 * 2 1 4 4 C 1.47746 * 120.08176 * 359.97438 * 3 2 1 5 5 O 1.21473 * 119.99865 * 6.62908 * 4 3 2 6 6 O 1.34707 * 120.00320 * 186.62669 * 4 3 2 7 7 C 1.39725 * 119.83848 * 180.27531 * 3 2 1 8 8 C 1.38117 * 120.14204 * 359.70229 * 7 3 2 9 9 C 1.38041 * 120.30661 * 0.02562 * 8 7 3 10 10 C 1.39323 * 120.15048 * 179.70258 * 2 1 3 11 11 C 1.47987 * 120.07197 * 359.97438 * 10 2 1 12 12 C 1.39891 * 119.44868 * 173.71765 * 11 10 2 13 13 C 1.36604 * 119.46611 * 180.23044 * 12 11 10 14 14 C 1.41301 * 118.41230 * 359.50889 * 13 12 11 15 15 C 1.41060 * 120.55306 * 180.23090 * 14 13 12 16 16 H 1.07997 * 119.99596 * 213.42320 * 15 14 13 17 17 C 1.40024 * 120.00163 * 33.42200 * 15 14 13 18 18 N 1.30791 * 120.00097 * 18.01806 * 17 15 14 19 19 Si 1.86802 * 120.00008 * 198.01484 * 17 15 14 20 20 H 1.48499 * 109.47091 * 60.00294 * 19 17 15 21 21 H 1.48496 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47186 * 300.00054 * 19 17 15 23 23 C 1.40948 * 118.89437 * 0.24530 * 14 13 12 24 24 N 1.31269 * 120.39710 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.46782 * 264.83519 * 1 2 3 26 26 H 1.09002 * 109.47254 * 24.82871 * 1 2 3 27 27 H 1.08995 * 109.47317 * 144.83347 * 1 2 3 28 28 H 0.96691 * 117.00090 * 179.97438 * 6 4 3 29 29 H 1.08001 * 119.93241 * 179.72402 * 7 3 2 30 30 H 1.08000 * 119.84737 * 180.02562 * 8 7 3 31 31 H 1.07997 * 119.92434 * 179.97438 * 9 8 7 32 32 H 1.08003 * 120.26433 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.79385 * 179.77570 * 13 12 11 34 34 H 0.96995 * 120.00368 * 180.02562 * 18 17 15 35 35 H 1.07994 * 119.80360 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2071 1.2053 0.0000 4 6 1.4735 2.4878 -0.0006 5 8 0.2648 2.4961 0.1204 6 8 2.1450 3.6478 -0.1352 7 6 3.6043 1.1977 -0.0058 8 6 4.2914 -0.0004 -0.0054 9 6 3.6041 -1.1975 0.0003 10 6 2.2068 -1.2047 0.0063 11 6 1.4719 -2.4892 0.0135 12 6 2.1812 -3.6882 -0.1136 13 6 1.5027 -4.8738 -0.1117 14 6 0.0972 -4.8438 0.0305 15 6 -0.6479 -6.0415 0.0432 16 1 -1.6426 -6.0631 -0.3768 17 6 -0.0979 -7.2024 0.6005 18 7 0.9267 -7.1176 1.4091 19 14 -0.8274 -8.8721 0.1891 20 1 -0.7424 -9.1022 -1.2755 21 1 -0.0696 -9.9324 0.9010 22 1 -2.2497 -8.9093 0.6143 23 6 -0.5479 -3.5973 0.1590 24 7 0.1484 -2.4846 0.1459 25 1 -0.3633 -0.0925 1.0236 26 1 -0.3634 0.9327 -0.4315 27 1 -0.3634 -0.8400 -0.5919 28 1 1.6218 4.4609 -0.1301 29 1 4.1482 2.1308 -0.0103 30 1 5.3714 -0.0007 -0.0095 31 1 4.1476 -2.1308 0.0002 32 1 3.2563 -3.6763 -0.2165 33 1 2.0284 -5.8118 -0.2121 34 1 1.3079 -7.9218 1.7948 35 1 -1.6215 -3.5573 0.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245295892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:47 Heat of formation + Delta-G solvation = -33.054920 kcal Electronic energy + Delta-G solvation = -20888.669777 eV Core-core repulsion = 17623.326361 eV Total energy + Delta-G solvation = -3265.343415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38057 -39.04995 -37.73003 -36.06297 -34.33822 -32.36914 -31.91128 -30.70507 -29.35581 -26.84098 -25.51011 -24.04715 -22.37249 -21.92134 -20.50009 -20.21939 -17.88524 -17.57155 -16.97765 -15.67747 -15.63176 -15.42423 -15.27626 -14.73539 -14.13648 -13.87064 -13.47874 -13.40193 -12.95062 -12.65775 -12.31271 -12.11482 -11.95213 -11.65041 -11.59821 -11.39026 -11.35781 -11.34455 -10.96829 -10.84482 -10.61485 -9.99959 -9.69616 -9.52925 -8.88840 -8.50660 -8.39720 -7.88675 -7.34410 -7.02513 -4.62827 0.96449 1.53906 2.47592 2.80546 2.84354 2.92985 2.95379 3.12772 3.15712 3.72505 4.09252 4.51353 5.07339 5.12594 5.24153 5.41995 5.47912 5.57478 5.76088 5.92168 6.12021 6.19349 6.26694 6.43331 6.51756 6.56916 6.62955 6.66496 6.71434 6.81292 6.89751 7.02109 7.16372 7.20836 7.31759 7.57490 7.70287 7.76149 8.05543 8.23364 8.45746 8.52136 9.41012 9.87752 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.036559 B = 0.003766 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.707445 B = 7433.627810 C = 8097.070569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.003 4.003 3 C -0.140 4.140 4 C 0.525 3.475 5 O -0.505 6.505 6 O -0.518 6.518 7 C -0.087 4.087 8 C -0.140 4.140 9 C -0.093 4.093 10 C -0.001 4.001 11 C -0.002 4.002 12 C -0.121 4.121 13 C -0.136 4.136 14 C 0.078 3.922 15 C -0.446 4.446 16 H 0.088 0.912 17 C 0.076 3.924 18 N -0.780 5.780 19 Si 0.913 3.087 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.013 4.013 24 N -0.438 5.438 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.408 0.592 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.288 0.712 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 9.241 -2.320 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.004 4.004 3 C -0.141 4.141 4 C 0.372 3.628 5 O -0.395 6.395 6 O -0.329 6.329 7 C -0.106 4.106 8 C -0.158 4.158 9 C -0.112 4.112 10 C -0.002 4.002 11 C -0.136 4.136 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.073 3.927 15 C -0.475 4.475 16 H 0.106 0.894 17 C -0.145 4.145 18 N -0.403 5.403 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.178 4.178 24 N -0.146 5.146 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.266 0.734 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.728 9.511 -2.039 10.815 hybrid contribution 0.042 -1.213 -0.025 1.214 sum 4.770 8.297 -2.063 9.791 Atomic orbital electron populations 1.21623 0.89233 1.04319 1.03562 1.20221 0.97609 0.89792 0.92813 1.18771 0.93497 0.89420 1.12425 1.21113 0.85431 0.84153 0.72149 1.90789 1.15383 1.87098 1.46273 1.84582 1.45573 1.17171 1.85622 1.21226 0.92512 0.98473 0.98386 1.20878 0.99648 0.91977 1.03266 1.21474 0.93491 0.98292 0.97980 1.18532 0.91958 0.91641 0.98054 1.18692 0.89656 0.90193 1.15012 1.21250 0.98627 0.93278 1.00949 1.21138 0.94835 0.96429 1.03696 1.18588 0.92694 0.93793 0.87616 1.19585 1.02228 0.92945 1.32723 0.89414 1.26015 0.94180 1.01722 0.92577 1.69762 1.19119 1.32262 1.19183 0.86263 0.80150 0.79804 0.80083 1.18522 1.20118 1.18623 1.22681 0.98712 0.87786 1.08604 1.67290 1.06861 1.30865 1.09540 0.91233 0.90337 0.87995 0.73441 0.85436 0.85811 0.85463 0.87953 0.86700 0.90140 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 7.79 36.01 0.28 -2.30 16 2 C 0.00 -0.06 5.95 -103.79 -0.62 -0.68 16 3 C -0.14 -2.32 5.87 -105.03 -0.62 -2.94 16 4 C 0.53 8.00 8.21 34.62 0.28 8.29 16 5 O -0.51 -8.84 13.93 -19.25 -0.27 -9.10 16 6 O -0.52 -5.75 12.69 -40.51 -0.51 -6.26 16 7 C -0.09 -1.24 9.61 -39.07 -0.38 -1.61 16 8 C -0.14 -1.94 10.02 -39.70 -0.40 -2.33 16 9 C -0.09 -1.53 9.40 -39.10 -0.37 -1.89 16 10 C 0.00 -0.02 5.87 -104.94 -0.62 -0.63 16 11 C 0.00 -0.05 6.67 -82.74 -0.55 -0.60 16 12 C -0.12 -2.66 9.37 -39.55 -0.37 -3.03 16 13 C -0.14 -3.27 8.71 -39.01 -0.34 -3.61 16 14 C 0.08 1.93 5.46 -106.64 -0.58 1.34 16 15 C -0.45 -10.80 9.01 -37.84 -0.34 -11.14 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 17 C 0.08 1.74 5.09 -17.33 -0.09 1.66 16 18 N -0.78 -18.70 11.64 55.55 0.65 -18.05 16 19 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 23 C -0.01 -0.31 10.97 -16.77 -0.18 -0.50 16 24 N -0.44 -10.19 6.13 -9.10 -0.06 -10.24 16 25 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 26 H 0.08 1.50 5.00 -52.24 -0.26 1.24 16 27 H 0.10 2.14 5.53 -51.93 -0.29 1.85 16 28 H 0.41 2.54 9.11 45.56 0.42 2.95 16 29 H 0.13 1.49 7.62 -52.49 -0.40 1.09 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.13 1.89 6.18 -52.49 -0.32 1.57 16 32 H 0.10 1.94 6.18 -52.48 -0.32 1.61 16 33 H 0.12 2.77 6.94 -52.49 -0.36 2.41 16 34 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 35 H 0.13 2.89 8.06 -52.49 -0.42 2.46 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -28.08 300.34 -7.94 -36.03 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -2.36 Total: 11.01 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -4.88 Total: -19.98 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 0.59 Total: -28.29 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.78 Total: -15.36 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.08 -7.94 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245295892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.974 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds