Wall clock time and date at job start Tue Mar 31 2020 06:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39384 * 120.14856 * 2 1 4 4 C 1.47746 * 120.08176 * 359.97438 * 3 2 1 5 5 O 1.21473 * 119.99865 * 6.62908 * 4 3 2 6 6 O 1.34707 * 120.00320 * 186.62669 * 4 3 2 7 7 C 1.39725 * 119.83848 * 180.27531 * 3 2 1 8 8 C 1.38117 * 120.14204 * 359.70229 * 7 3 2 9 9 C 1.38041 * 120.30661 * 0.02562 * 8 7 3 10 10 C 1.39323 * 120.15048 * 179.70258 * 2 1 3 11 11 C 1.47987 * 120.07197 * 359.97438 * 10 2 1 12 12 C 1.39891 * 119.44868 * 173.71765 * 11 10 2 13 13 C 1.36604 * 119.46611 * 180.23044 * 12 11 10 14 14 C 1.41301 * 118.41230 * 359.50889 * 13 12 11 15 15 C 1.41060 * 120.55306 * 180.23090 * 14 13 12 16 16 H 1.07997 * 119.99596 * 213.42320 * 15 14 13 17 17 C 1.40024 * 120.00163 * 33.42200 * 15 14 13 18 18 N 1.30791 * 120.00097 * 18.01806 * 17 15 14 19 19 Si 1.86802 * 120.00008 * 198.01484 * 17 15 14 20 20 H 1.48499 * 109.47091 * 60.00294 * 19 17 15 21 21 H 1.48496 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47186 * 300.00054 * 19 17 15 23 23 C 1.40948 * 118.89437 * 0.24530 * 14 13 12 24 24 N 1.31269 * 120.39710 * 0.02562 * 23 14 13 25 25 H 1.09006 * 109.46782 * 264.83519 * 1 2 3 26 26 H 1.09002 * 109.47254 * 24.82871 * 1 2 3 27 27 H 1.08995 * 109.47317 * 144.83347 * 1 2 3 28 28 H 0.96691 * 117.00090 * 179.97438 * 6 4 3 29 29 H 1.08001 * 119.93241 * 179.72402 * 7 3 2 30 30 H 1.08000 * 119.84737 * 180.02562 * 8 7 3 31 31 H 1.07997 * 119.92434 * 179.97438 * 9 8 7 32 32 H 1.08003 * 120.26433 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.79385 * 179.77570 * 13 12 11 34 34 H 0.96995 * 120.00368 * 180.02562 * 18 17 15 35 35 H 1.07994 * 119.80360 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2071 1.2053 0.0000 4 6 1.4735 2.4878 -0.0006 5 8 0.2648 2.4961 0.1204 6 8 2.1450 3.6478 -0.1352 7 6 3.6043 1.1977 -0.0058 8 6 4.2914 -0.0004 -0.0054 9 6 3.6041 -1.1975 0.0003 10 6 2.2068 -1.2047 0.0063 11 6 1.4719 -2.4892 0.0135 12 6 2.1812 -3.6882 -0.1136 13 6 1.5027 -4.8738 -0.1117 14 6 0.0972 -4.8438 0.0305 15 6 -0.6479 -6.0415 0.0432 16 1 -1.6426 -6.0631 -0.3768 17 6 -0.0979 -7.2024 0.6005 18 7 0.9267 -7.1176 1.4091 19 14 -0.8274 -8.8721 0.1891 20 1 -0.7424 -9.1022 -1.2755 21 1 -0.0696 -9.9324 0.9010 22 1 -2.2497 -8.9093 0.6143 23 6 -0.5479 -3.5973 0.1590 24 7 0.1484 -2.4846 0.1459 25 1 -0.3633 -0.0925 1.0236 26 1 -0.3634 0.9327 -0.4315 27 1 -0.3634 -0.8400 -0.5919 28 1 1.6218 4.4609 -0.1301 29 1 4.1482 2.1308 -0.0103 30 1 5.3714 -0.0007 -0.0095 31 1 4.1476 -2.1308 0.0002 32 1 3.2563 -3.6763 -0.2165 33 1 2.0284 -5.8118 -0.2121 34 1 1.3079 -7.9218 1.7948 35 1 -1.6215 -3.5573 0.2688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245295892.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:47 Heat of formation + Delta-G solvation = -48.280925 kcal Electronic energy + Delta-G solvation = -20889.330026 eV Core-core repulsion = 17623.326361 eV Total energy + Delta-G solvation = -3266.003665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61398 -40.57214 -39.17582 -37.14454 -36.04708 -33.80838 -33.40540 -32.39840 -30.95750 -28.31800 -27.14848 -25.34247 -23.98624 -23.56062 -21.97071 -21.52354 -19.36157 -19.02455 -18.22629 -17.29223 -17.04464 -16.70143 -16.61231 -16.26965 -15.63298 -15.47940 -14.95673 -14.74107 -14.39868 -14.03605 -13.88454 -13.69997 -13.54549 -13.25984 -13.05718 -12.87070 -12.79314 -12.55211 -12.41372 -12.33985 -12.02281 -11.67746 -11.23723 -11.03786 -10.37433 -10.23933 -9.78887 -9.61145 -9.01140 -8.72684 -6.45391 -0.29850 0.12459 0.91987 1.06558 1.38924 1.46710 1.51128 1.67533 2.09834 2.16737 2.61274 2.93857 3.63540 3.68897 3.94670 4.04212 4.09857 4.28446 4.36118 4.44619 4.67637 4.77165 4.86918 4.91940 4.96151 5.00289 5.05288 5.13937 5.26408 5.37678 5.45027 5.50500 5.71088 5.72971 5.78059 5.90593 5.97788 6.07417 6.43051 6.68289 6.72468 7.03715 7.61816 8.19711 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.036559 B = 0.003766 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.707445 B = 7433.627810 C = 8097.070569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.026 4.026 3 C -0.153 4.153 4 C 0.532 3.468 5 O -0.537 6.537 6 O -0.500 6.500 7 C -0.064 4.064 8 C -0.127 4.127 9 C -0.087 4.087 10 C -0.038 4.038 11 C -0.002 4.002 12 C -0.125 4.125 13 C -0.150 4.150 14 C 0.052 3.948 15 C -0.482 4.482 16 H 0.088 0.912 17 C 0.040 3.960 18 N -0.815 5.815 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.267 1.267 22 H -0.258 1.258 23 C -0.036 4.036 24 N -0.448 5.448 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.432 0.568 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.295 0.705 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 10.827 -2.640 13.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 C -0.154 4.154 4 C 0.379 3.621 5 O -0.429 6.429 6 O -0.314 6.314 7 C -0.082 4.082 8 C -0.144 4.144 9 C -0.106 4.106 10 C -0.039 4.039 11 C -0.137 4.137 12 C -0.144 4.144 13 C -0.175 4.175 14 C 0.047 3.953 15 C -0.511 4.511 16 H 0.106 0.894 17 C -0.177 4.177 18 N -0.440 5.440 19 Si 0.806 3.194 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.182 1.182 23 C -0.199 4.199 24 N -0.156 5.156 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.294 0.706 29 H 0.182 0.818 30 H 0.187 0.813 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.436 11.137 -2.360 13.597 hybrid contribution -0.595 -1.331 0.068 1.460 sum 6.840 9.805 -2.291 12.173 Atomic orbital electron populations 1.21405 0.90705 1.03472 1.01996 1.20208 0.96990 0.91065 0.94499 1.18959 0.94837 0.89177 1.12428 1.20896 0.84845 0.84888 0.71487 1.90779 1.16738 1.87652 1.47763 1.84498 1.45175 1.17104 1.84579 1.21708 0.91345 1.00279 0.94887 1.21372 1.01799 0.90509 1.00763 1.21748 0.92020 1.00341 0.96499 1.18580 0.93497 0.90389 1.01429 1.19337 0.89536 0.91977 1.12819 1.21553 1.00263 0.92452 1.00161 1.21189 0.94801 0.96929 1.04601 1.18863 0.93482 0.94394 0.88526 1.19808 1.02797 0.93937 1.34551 0.89359 1.26816 0.94359 1.04885 0.91670 1.69801 1.20518 1.33560 1.20097 0.85181 0.79357 0.75094 0.79763 1.18256 1.19120 1.18233 1.22840 0.99233 0.88074 1.09709 1.67397 1.07736 1.30551 1.09943 0.93137 0.90016 0.90082 0.70628 0.81798 0.81255 0.84004 0.84735 0.87435 0.89449 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 7.79 71.24 0.55 -4.35 16 2 C -0.03 -0.99 5.95 -19.33 -0.12 -1.11 16 3 C -0.15 -4.68 5.87 -20.13 -0.12 -4.79 16 4 C 0.53 14.93 8.21 70.34 0.58 15.51 16 5 O -0.54 -18.34 13.93 19.92 0.28 -18.06 16 6 O -0.50 -9.04 12.69 -56.17 -0.71 -9.75 16 7 C -0.06 -1.49 9.61 22.60 0.22 -1.27 16 8 C -0.13 -2.84 10.02 22.19 0.22 -2.62 16 9 C -0.09 -2.58 9.40 22.58 0.21 -2.36 16 10 C -0.04 -1.47 5.87 -20.07 -0.12 -1.59 16 11 C 0.00 -0.09 6.67 41.95 0.28 0.19 16 12 C -0.12 -5.54 9.37 22.29 0.21 -5.34 16 13 C -0.15 -7.47 8.71 22.64 0.20 -7.27 16 14 C 0.05 2.71 5.46 -21.17 -0.12 2.59 16 15 C -0.48 -24.52 9.01 23.40 0.21 -24.31 16 16 H 0.09 4.28 7.91 -2.91 -0.02 4.25 16 17 C 0.04 1.89 5.09 85.28 0.43 2.33 16 18 N -0.82 -40.23 11.64 21.84 0.25 -39.97 16 19 Si 0.99 35.59 29.60 68.60 2.03 37.62 16 20 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 21 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 23 C -0.04 -1.81 10.97 85.44 0.94 -0.88 16 24 N -0.45 -21.93 6.13 -182.70 -1.12 -23.05 16 25 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.08 3.23 5.00 -7.33 -0.04 3.20 16 27 H 0.08 3.61 5.53 -2.39 -0.01 3.60 16 28 H 0.43 3.65 9.11 -74.06 -0.67 2.98 16 29 H 0.16 2.70 7.62 -2.91 -0.02 2.68 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.14 3.71 6.18 -2.91 -0.02 3.70 16 32 H 0.13 4.93 6.18 -2.91 -0.02 4.91 16 33 H 0.11 5.40 6.94 -2.91 -0.02 5.38 16 34 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 35 H 0.14 6.46 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -64.54 300.34 4.77 -59.77 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.46 Total: 28.71 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.59 Total: -35.26 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.87 Total: -63.03 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.44 Total: -27.81 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -64.54 4.77 -59.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245295892.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.488 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds