Wall clock time and date at job start Tue Mar 31 2020 06:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39462 * 120.13238 * 2 1 4 4 C 1.47744 * 120.09295 * 359.74653 * 3 2 1 5 5 O 1.21467 * 119.99883 * 353.50831 * 4 3 2 6 6 O 1.34708 * 120.00094 * 173.50516 * 4 3 2 7 7 C 1.39674 * 119.81588 * 179.72733 * 3 2 1 8 8 C 1.38040 * 120.08721 * 0.02562 * 7 3 2 9 9 C 1.38129 * 120.28115 * 359.96112 * 8 7 3 10 10 C 1.39039 * 120.14242 * 179.72763 * 2 1 3 11 11 C 1.48434 * 120.04326 * 0.26766 * 10 2 1 12 12 C 1.39699 * 120.40636 * 56.71852 * 11 10 2 13 13 N 1.31914 * 121.14830 * 179.97438 * 12 11 10 14 14 C 1.31520 * 122.12062 * 359.97438 * 13 12 11 15 15 C 1.40765 * 120.66327 * 359.97113 * 14 13 12 16 16 C 1.41443 * 120.60515 * 180.02562 * 15 14 13 17 17 H 1.07991 * 120.00273 * 151.72622 * 16 15 14 18 18 C 1.39939 * 119.99604 * 331.72372 * 16 15 14 19 19 N 1.30828 * 119.99827 * 164.16996 * 18 16 15 20 20 Si 1.86802 * 120.00134 * 344.17272 * 18 16 15 21 21 H 1.48504 * 109.46723 * 88.34068 * 20 18 16 22 22 H 1.48500 * 109.47138 * 208.33701 * 20 18 16 23 23 H 1.48494 * 109.47180 * 328.33915 * 20 18 16 24 24 C 1.39121 * 120.41004 * 236.43171 * 11 10 2 25 25 H 1.08991 * 109.47052 * 85.07273 * 1 2 3 26 26 H 1.09005 * 109.46306 * 205.07000 * 1 2 3 27 27 H 1.08994 * 109.47307 * 325.06715 * 1 2 3 28 28 H 0.96698 * 117.00064 * 179.97438 * 6 4 3 29 29 H 1.07995 * 119.95006 * 180.02562 * 7 3 2 30 30 H 1.08003 * 119.85950 * 179.97438 * 8 7 3 31 31 H 1.08003 * 119.90875 * 180.02562 * 9 8 7 32 32 H 1.07998 * 119.42279 * 359.97227 * 12 11 10 33 33 H 1.08003 * 119.66593 * 180.02562 * 14 13 12 34 34 H 0.97004 * 119.99931 * 179.97438 * 19 18 16 35 35 H 1.08007 * 120.95671 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.2062 0.0000 4 6 1.4734 2.4886 -0.0057 5 8 0.2651 2.4964 -0.1292 6 8 2.1445 3.6491 0.1263 7 6 3.6038 1.1985 0.0058 8 6 4.2892 0.0003 0.0109 9 6 3.5996 -1.1966 0.0112 10 6 2.2052 -1.2024 0.0057 11 6 1.4672 -2.4902 0.0058 12 6 0.5461 -2.7774 -1.0044 13 7 -0.1174 -3.9175 -1.0189 14 6 0.0507 -4.8363 -0.0930 15 6 0.9593 -4.6336 0.9629 16 6 1.1396 -5.6227 1.9576 17 1 2.0861 -5.7063 2.4708 18 6 0.0913 -6.4931 2.2769 19 7 0.3323 -7.5872 2.9525 20 14 -1.6520 -6.0929 1.7382 21 1 -1.8898 -6.6458 0.3806 22 1 -2.6159 -6.6952 2.6939 23 1 -1.8360 -4.6196 1.7120 24 6 1.6886 -3.4287 1.0087 25 1 -0.3633 0.0883 -1.0238 26 1 -0.3632 -0.9309 0.4355 27 1 -0.3633 0.8424 0.5884 28 1 1.6214 4.4623 0.1164 29 1 4.1481 2.1312 0.0062 30 1 5.3692 -0.0014 0.0149 31 1 4.1420 -2.1306 0.0157 32 1 0.3742 -2.0535 -1.7872 33 1 -0.5133 -5.7559 -0.1439 34 1 -0.3943 -8.1904 3.1741 35 1 2.3973 -3.2381 1.8012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245298631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:31 Heat of formation + Delta-G solvation = -44.253121 kcal Electronic energy + Delta-G solvation = -21035.203950 eV Core-core repulsion = 17769.374944 eV Total energy + Delta-G solvation = -3265.829006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62250 -39.25605 -38.05994 -36.24552 -34.09300 -33.03459 -32.29212 -31.21067 -29.19814 -27.02142 -25.59076 -24.36176 -23.12510 -21.49666 -20.79399 -20.56767 -18.22617 -17.65468 -16.83929 -16.28298 -15.84790 -15.62838 -15.34727 -15.11311 -14.60238 -14.32977 -13.46790 -13.28837 -13.09415 -13.06232 -12.67283 -12.23909 -12.12948 -12.01854 -11.79095 -11.71345 -11.57094 -11.37103 -11.02647 -10.91893 -10.59946 -10.08114 -10.00702 -9.46795 -9.12496 -8.80808 -8.36759 -8.21818 -7.70002 -7.13582 -4.70490 0.73034 1.29541 2.23736 2.47595 2.61011 2.94230 3.04020 3.12970 3.21399 3.80154 3.83172 4.40045 4.78805 4.88269 5.00846 5.13115 5.24429 5.27006 5.52694 5.71611 5.80913 5.89412 5.96080 6.03196 6.16286 6.20952 6.24936 6.32151 6.42293 6.49014 6.59660 6.72506 6.77226 6.93244 7.03249 7.27321 7.35902 7.76139 7.82588 8.07332 8.30755 8.52059 9.30221 9.87430 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.026728 B = 0.004415 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.325599 B = 6340.681712 C = 6806.934510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.004 4.004 3 C -0.139 4.139 4 C 0.526 3.474 5 O -0.507 6.507 6 O -0.516 6.516 7 C -0.068 4.068 8 C -0.142 4.142 9 C -0.067 4.067 10 C -0.033 4.033 11 C -0.070 4.070 12 C -0.020 4.020 13 N -0.453 5.453 14 C -0.034 4.034 15 C 0.044 3.956 16 C -0.431 4.431 17 H 0.095 0.905 18 C 0.083 3.917 19 N -0.797 5.797 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.287 1.287 23 H -0.249 1.249 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.411 0.589 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.290 0.710 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 14.974 -3.201 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.004 4.004 3 C -0.140 4.140 4 C 0.372 3.628 5 O -0.397 6.397 6 O -0.328 6.328 7 C -0.087 4.087 8 C -0.160 4.160 9 C -0.085 4.085 10 C -0.034 4.034 11 C -0.073 4.073 12 C -0.178 4.178 13 N -0.160 5.160 14 C -0.196 4.196 15 C 0.039 3.961 16 C -0.459 4.459 17 H 0.113 0.887 18 C -0.138 4.138 19 N -0.420 5.420 20 Si 0.740 3.260 21 H -0.187 1.187 22 H -0.214 1.214 23 H -0.172 1.172 24 C -0.186 4.186 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.269 0.731 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.028 14.207 -3.735 15.232 hybrid contribution -0.334 0.673 0.590 0.956 sum 3.694 14.880 -3.145 15.651 Atomic orbital electron populations 1.21193 0.89743 1.03847 1.03338 1.20107 0.96951 0.90271 0.93102 1.18744 0.93575 0.89435 1.12251 1.20975 0.85396 0.84176 0.72301 1.90854 1.15335 1.87515 1.46004 1.84565 1.45560 1.17148 1.85495 1.21341 0.92485 0.98810 0.96027 1.21027 1.00144 0.91895 1.02893 1.21589 0.93364 0.98603 0.94918 1.18786 0.92749 0.92176 0.99701 1.19249 0.98125 0.92403 0.97479 1.21818 0.99736 0.96195 1.00025 1.66964 1.21890 1.01430 1.25694 1.22727 1.04471 0.98874 0.93487 1.18564 0.92140 0.92078 0.93271 1.19467 1.00790 1.09218 1.16446 0.88735 1.26184 1.02291 0.92626 0.92667 1.69650 1.35896 1.07634 1.28775 0.86370 0.80052 0.81467 0.78143 1.18744 1.21437 1.17216 1.21386 1.04848 0.93119 0.99244 0.90501 0.90856 0.89496 0.73113 0.84894 0.85265 0.85048 0.85660 0.84828 0.89959 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.53 36.01 0.27 -1.80 16 2 C 0.00 -0.06 5.92 -103.87 -0.61 -0.68 16 3 C -0.14 -1.95 5.87 -105.02 -0.62 -2.57 16 4 C 0.53 6.87 8.20 34.62 0.28 7.15 16 5 O -0.51 -7.77 14.11 -19.24 -0.27 -8.04 16 6 O -0.52 -4.80 12.69 -40.51 -0.51 -5.31 16 7 C -0.07 -0.81 9.61 -39.12 -0.38 -1.19 16 8 C -0.14 -1.67 10.02 -39.69 -0.40 -2.06 16 9 C -0.07 -0.96 9.62 -39.17 -0.38 -1.33 16 10 C -0.03 -0.56 5.41 -104.95 -0.57 -1.13 16 11 C -0.07 -1.42 4.43 -104.82 -0.46 -1.89 16 12 C -0.02 -0.44 9.26 -16.97 -0.16 -0.59 16 13 N -0.45 -10.76 10.32 -12.29 -0.13 -10.89 16 14 C -0.03 -0.84 8.43 -16.73 -0.14 -0.98 16 15 C 0.04 1.09 5.17 -106.71 -0.55 0.53 16 16 C -0.43 -11.05 9.62 -37.73 -0.36 -11.41 16 17 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 18 C 0.08 2.07 5.45 -17.34 -0.09 1.98 16 19 N -0.80 -20.17 13.93 55.55 0.77 -19.40 16 20 Si 0.91 20.30 24.48 -169.99 -4.16 16.14 16 21 H -0.26 -5.69 6.38 56.52 0.36 -5.33 16 22 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.25 -5.79 6.99 56.52 0.40 -5.40 16 24 C -0.16 -3.54 9.53 -38.24 -0.36 -3.90 16 25 H 0.08 1.23 8.12 -51.93 -0.42 0.80 16 26 H 0.07 1.33 6.35 -51.93 -0.33 1.00 16 27 H 0.09 1.42 5.76 -51.93 -0.30 1.12 16 28 H 0.41 1.90 9.11 45.56 0.42 2.32 16 29 H 0.13 1.26 7.62 -52.49 -0.40 0.86 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.13 2.41 7.76 -52.49 -0.41 2.01 16 33 H 0.13 3.26 4.15 -52.48 -0.22 3.04 16 34 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 35 H 0.11 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -28.92 299.48 -6.85 -35.77 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -2.53 Total: 7.07 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -4.53 Total: -19.86 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.65 Total: -30.29 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.79 Total: -13.35 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.16 Total: 16.14 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.92 -6.85 -35.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245298631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.481 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds