Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39365 * 120.15742 * 2 1 4 4 C 1.47759 * 120.07240 * 359.97438 * 3 2 1 5 5 O 1.21462 * 120.00012 * 6.36879 * 4 3 2 6 6 O 1.34705 * 119.99805 * 186.36973 * 4 3 2 7 7 C 1.39735 * 119.84988 * 180.24877 * 3 2 1 8 8 C 1.38130 * 120.15603 * 359.75043 * 7 3 2 9 9 C 1.38013 * 120.31474 * 359.97438 * 8 7 3 10 10 C 1.39407 * 120.15435 * 179.74462 * 2 1 3 11 11 C 1.47843 * 120.08045 * 0.02566 * 10 2 1 12 12 C 1.39670 * 120.64897 * 244.95683 * 11 10 2 13 13 C 1.38388 * 118.47492 * 180.26746 * 12 11 10 14 14 C 1.39061 * 119.72550 * 359.74270 * 13 12 11 15 15 N 1.31279 * 121.33591 * 0.02562 * 14 13 12 16 16 C 1.33700 * 121.63564 * 359.97438 * 15 14 13 17 17 C 1.40823 * 119.94225 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00538 * 180.02562 * 17 16 15 19 19 C 1.40156 * 119.99598 * 359.72537 * 17 16 15 20 20 N 1.30697 * 120.00251 * 0.27900 * 19 17 16 21 21 Si 1.86797 * 120.00015 * 180.27255 * 19 17 16 22 22 H 1.48501 * 109.47374 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47113 * 120.00236 * 21 19 17 24 24 H 1.48505 * 109.47514 * 240.00433 * 21 19 17 25 25 H 1.09000 * 109.47228 * 277.16245 * 1 2 3 26 26 H 1.08998 * 109.47079 * 37.15998 * 1 2 3 27 27 H 1.08995 * 109.46909 * 157.16056 * 1 2 3 28 28 H 0.96702 * 117.00200 * 180.02562 * 6 4 3 29 29 H 1.08003 * 119.92377 * 179.76650 * 7 3 2 30 30 H 1.08003 * 119.84065 * 179.97438 * 8 7 3 31 31 H 1.08005 * 119.92266 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.76147 * 0.02562 * 12 11 10 33 33 H 1.07996 * 120.14295 * 179.72875 * 13 12 11 34 34 H 1.08000 * 119.33596 * 180.02562 * 14 13 12 35 35 H 0.96999 * 119.99878 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2071 1.2050 0.0000 4 6 1.4735 2.4876 -0.0006 5 8 0.2644 2.4957 0.1156 6 8 2.1455 3.6478 -0.1300 7 6 3.6044 1.1975 -0.0053 8 6 4.2919 -0.0005 -0.0053 9 6 3.6053 -1.1977 0.0005 10 6 2.2073 -1.2054 0.0054 11 6 1.4733 -2.4888 0.0105 12 6 1.5609 -3.3547 1.1029 13 6 0.8596 -4.5469 1.0577 14 6 0.0877 -4.8509 -0.0584 15 7 0.0082 -4.0281 -1.0782 16 6 0.6630 -2.8625 -1.0916 17 6 0.5527 -2.0070 -2.2047 18 1 1.0815 -1.0655 -2.2168 19 6 -0.2385 -2.3804 -3.2997 20 7 -0.8782 -3.5201 -3.2854 21 14 -0.3789 -1.2492 -4.7795 22 1 0.4362 -0.0294 -4.5493 23 1 0.1158 -1.9535 -5.9897 24 1 -1.8000 -0.8655 -4.9763 25 1 -0.3634 0.1281 1.0196 26 1 -0.3633 0.8190 -0.6207 27 1 -0.3633 -0.9471 -0.3989 28 1 1.6224 4.4612 -0.1244 29 1 4.1482 2.1307 -0.0091 30 1 5.3720 -0.0004 -0.0098 31 1 4.1492 -2.1308 0.0000 32 1 2.1653 -3.1016 1.9613 33 1 0.9116 -5.2384 1.8856 34 1 -0.4573 -5.7829 -0.0868 35 1 -1.4261 -3.7783 -4.0430 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245299536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -34.392381 kcal Electronic energy + Delta-G solvation = -21793.128459 eV Core-core repulsion = 18527.727047 eV Total energy + Delta-G solvation = -3265.401412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26944 -38.88781 -37.54235 -35.93930 -33.80109 -32.65570 -31.78161 -30.35081 -28.85490 -26.83388 -25.49755 -23.96208 -22.59994 -21.45594 -20.36326 -20.09220 -17.71252 -17.55492 -16.81181 -15.70952 -15.47598 -15.26241 -14.87080 -14.57096 -14.18785 -14.17361 -13.31712 -12.86601 -12.72119 -12.63438 -12.28379 -12.03515 -11.68852 -11.46471 -11.37926 -11.29322 -11.27493 -11.13978 -10.97097 -10.63968 -10.39823 -9.99969 -9.69800 -9.42123 -8.62168 -8.39042 -8.10341 -7.64529 -7.41606 -6.52211 -4.62387 1.12775 1.78512 2.61183 2.83270 2.96439 3.04926 3.09996 3.15386 3.27495 3.87734 4.21317 4.64865 5.18002 5.30546 5.36760 5.61129 5.70742 5.75502 5.94713 6.03100 6.10866 6.23707 6.38469 6.45037 6.49530 6.54542 6.62095 6.70487 6.75902 6.89054 7.01450 7.12074 7.20123 7.25727 7.37686 7.52721 7.65242 7.93351 8.13614 8.15330 8.52610 8.81255 9.98896 10.17671 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.007784 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.229463 B = 3596.107486 C = 4787.288878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.002 3.998 3 C -0.142 4.142 4 C 0.524 3.476 5 O -0.508 6.508 6 O -0.518 6.518 7 C -0.083 4.083 8 C -0.144 4.144 9 C -0.083 4.083 10 C 0.012 3.988 11 C -0.238 4.238 12 C -0.032 4.032 13 C -0.320 4.320 14 C 0.132 3.868 15 N -0.482 5.482 16 C 0.270 3.730 17 C -0.413 4.413 18 H 0.088 0.912 19 C 0.069 3.931 20 N -0.706 5.706 21 Si 0.900 3.100 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.270 1.270 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.407 0.593 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 7.543 3.453 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.001 3.999 3 C -0.143 4.143 4 C 0.370 3.630 5 O -0.397 6.397 6 O -0.330 6.330 7 C -0.101 4.101 8 C -0.162 4.162 9 C -0.102 4.102 10 C 0.011 3.989 11 C -0.242 4.242 12 C -0.056 4.056 13 C -0.344 4.344 14 C -0.036 4.036 15 N -0.193 5.193 16 C 0.147 3.853 17 C -0.443 4.443 18 H 0.106 0.894 19 C -0.158 4.158 20 N -0.326 5.326 21 Si 0.723 3.277 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.195 1.195 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.265 0.735 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.192 6.864 2.579 8.984 hybrid contribution 0.215 1.166 0.140 1.194 sum 5.406 8.030 2.719 10.055 Atomic orbital electron populations 1.21282 0.89839 1.05417 1.01820 1.20280 0.97086 0.90175 0.92332 1.18777 0.93524 0.89405 1.12643 1.21100 0.85496 0.84129 0.72277 1.90852 1.15314 1.87492 1.46086 1.84580 1.45519 1.17131 1.85768 1.21220 0.92491 0.98425 0.97961 1.20908 0.99568 0.92156 1.03611 1.21604 0.93838 0.97860 0.96858 1.18561 0.91892 0.92209 0.96250 1.19186 1.09907 0.95923 0.99223 1.20833 0.96099 0.93172 0.95533 1.21204 1.10746 1.00384 1.02023 1.22607 0.93911 0.97457 0.89617 1.68777 1.22575 1.03541 1.24387 1.18479 0.86933 0.89419 0.90498 1.19679 1.22863 1.03461 0.98260 0.89410 1.26113 0.94499 0.95278 0.99873 1.70112 1.16605 1.17652 1.28219 0.86362 0.79299 0.81184 0.80809 1.18141 1.19610 1.19512 0.92072 0.90174 0.88601 0.73542 0.85514 0.86015 0.85913 0.88613 0.88677 0.86370 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 7.77 36.00 0.28 -2.42 16 2 C 0.00 0.04 4.90 -103.77 -0.51 -0.47 16 3 C -0.14 -2.53 5.87 -105.03 -0.62 -3.14 16 4 C 0.52 8.66 8.20 34.62 0.28 8.94 16 5 O -0.51 -9.53 14.14 -19.24 -0.27 -9.80 16 6 O -0.52 -6.38 12.69 -40.51 -0.51 -6.89 16 7 C -0.08 -1.26 9.61 -39.06 -0.38 -1.64 16 8 C -0.14 -2.15 10.01 -39.70 -0.40 -2.55 16 9 C -0.08 -1.46 9.75 -39.08 -0.38 -1.84 16 10 C 0.01 0.24 4.47 -104.95 -0.47 -0.23 16 11 C -0.24 -5.45 4.61 -104.07 -0.48 -5.93 16 12 C -0.03 -0.69 9.88 -38.99 -0.39 -1.07 16 13 C -0.32 -6.87 10.10 -39.22 -0.40 -7.27 16 14 C 0.13 3.08 11.17 -17.48 -0.20 2.88 16 15 N -0.48 -12.70 7.85 -10.91 -0.09 -12.78 16 16 C 0.27 6.95 5.45 -84.71 -0.46 6.49 16 17 C -0.41 -10.51 6.92 -37.89 -0.26 -10.77 16 18 H 0.09 2.19 5.87 -52.49 -0.31 1.89 16 19 C 0.07 1.71 5.50 -17.31 -0.10 1.61 16 20 N -0.71 -18.11 11.46 55.56 0.64 -17.48 16 21 Si 0.90 18.52 29.56 -169.99 -5.02 13.50 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.08 1.70 5.90 -51.93 -0.31 1.39 16 27 H 0.10 2.26 4.40 -51.93 -0.23 2.03 16 28 H 0.41 3.02 9.11 45.56 0.42 3.44 16 29 H 0.13 1.61 7.61 -52.48 -0.40 1.21 16 30 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 32 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 35 H 0.27 6.38 8.29 -40.82 -0.34 6.05 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -29.54 300.86 -7.69 -37.23 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -2.50 Total: 9.10 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -4.46 Total: -17.41 kcal Atomic # 7 Polarization: -30.81 SS G_CDS: 0.55 Total: -30.26 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.79 Total: -16.69 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.54 -7.69 -37.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245299536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.836 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds