Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39450 * 120.14369 * 2 1 4 4 C 1.47743 * 120.08605 * 0.04491 * 3 2 1 5 5 O 1.21467 * 120.00050 * 6.14609 * 4 3 2 6 6 O 1.34713 * 119.99946 * 186.14172 * 4 3 2 7 7 C 1.39676 * 119.82169 * 180.02562 * 3 2 1 8 8 C 1.38044 * 120.09018 * 359.97438 * 7 3 2 9 9 C 1.38129 * 120.28300 * 359.72315 * 8 7 3 10 10 C 1.39062 * 120.13666 * 180.02562 * 2 1 3 11 11 C 1.48398 * 120.04499 * 359.97438 * 10 2 1 12 12 C 1.40035 * 120.82267 * 309.99316 * 11 10 2 13 13 C 1.38507 * 119.42863 * 180.02562 * 12 11 10 14 14 N 1.31477 * 121.14198 * 0.02562 * 13 12 11 15 15 C 1.33637 * 121.79192 * 359.97438 * 14 13 12 16 16 C 1.41434 * 119.77584 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99954 * 180.02562 * 16 15 14 18 18 C 1.40026 * 120.00023 * 359.72973 * 16 15 14 19 19 N 1.30738 * 120.00169 * 0.27284 * 18 16 15 20 20 Si 1.86807 * 120.00079 * 180.27472 * 18 16 15 21 21 H 1.48502 * 109.46999 * 60.00010 * 20 18 16 22 22 H 1.48500 * 109.47196 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.46877 * 300.00048 * 20 18 16 24 24 C 1.39304 * 120.82379 * 130.30345 * 11 10 2 25 25 H 1.09000 * 109.46969 * 276.45399 * 1 2 3 26 26 H 1.09004 * 109.46984 * 36.44994 * 1 2 3 27 27 H 1.09004 * 109.47834 * 156.45237 * 1 2 3 28 28 H 0.96698 * 117.00081 * 179.97438 * 6 4 3 29 29 H 1.08000 * 119.94984 * 179.97438 * 7 3 2 30 30 H 1.08001 * 119.86117 * 180.02562 * 8 7 3 31 31 H 1.08001 * 119.91123 * 180.29868 * 9 8 7 32 32 H 1.08004 * 120.28266 * 0.02562 * 12 11 10 33 33 H 1.07996 * 119.42653 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00015 * 180.02562 * 19 18 16 35 35 H 1.07996 * 120.58281 * 359.96579 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2072 1.2059 0.0000 4 6 1.4736 2.4884 0.0010 5 8 0.2643 2.4962 0.1144 6 8 2.1460 3.6490 -0.1238 7 6 3.6039 1.1981 -0.0005 8 6 4.2893 -0.0002 -0.0005 9 6 3.5997 -1.1970 0.0058 10 6 2.2051 -1.2027 -0.0005 11 6 1.4672 -2.4902 -0.0005 12 6 0.4402 -2.7286 0.9211 13 6 -0.2292 -3.9409 0.8956 14 7 0.0833 -4.8719 0.0214 15 6 1.0547 -4.6946 -0.8790 16 6 1.3558 -5.7253 -1.7995 17 1 2.1404 -5.5861 -2.5284 18 6 0.6407 -6.9286 -1.7618 19 7 -0.3089 -7.0974 -0.8791 20 14 1.0435 -8.2929 -2.9727 21 1 2.4576 -8.7103 -2.7956 22 1 0.1507 -9.4536 -2.7256 23 1 0.8428 -7.7996 -4.3588 24 6 1.7832 -3.4940 -0.9132 25 1 -0.3633 0.1155 1.0212 26 1 -0.3633 0.8267 -0.6106 27 1 -0.3635 -0.9421 -0.4106 28 1 1.6228 4.4622 -0.1181 29 1 4.1484 2.1308 -0.0010 30 1 5.3693 -0.0020 -0.0005 31 1 4.1420 -2.1310 0.0106 32 1 0.1724 -1.9736 1.6455 33 1 -1.0215 -4.1245 1.6062 34 1 -0.8040 -7.9311 -0.8528 35 1 2.5718 -3.3502 -1.6370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245302333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = -36.389940 kcal Electronic energy + Delta-G solvation = -20906.084697 eV Core-core repulsion = 17640.596664 eV Total energy + Delta-G solvation = -3265.488033 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55202 -39.04400 -37.72181 -36.19616 -33.88610 -32.77245 -32.12695 -30.02702 -29.15082 -27.05260 -25.61564 -24.29528 -22.79626 -21.42730 -20.60147 -20.43941 -18.15828 -17.52355 -16.57631 -15.78354 -15.59647 -15.47223 -15.17629 -14.62026 -14.31138 -14.03077 -13.68889 -13.22603 -13.02466 -12.68939 -12.33602 -12.27207 -11.99340 -11.82584 -11.61799 -11.52763 -11.28697 -11.16518 -10.85756 -10.83430 -10.46178 -10.07371 -9.93822 -9.43190 -8.98413 -8.69028 -7.81794 -7.67962 -7.61427 -6.44143 -4.57429 0.80028 1.39042 2.51054 2.72549 2.91196 3.01851 3.06278 3.08174 3.17133 3.90915 3.93177 4.70570 4.87029 4.96364 5.08993 5.23805 5.36263 5.56385 5.83031 5.90202 5.98183 6.03956 6.06158 6.12197 6.31305 6.37933 6.44201 6.53816 6.66679 6.68106 6.71128 6.87338 6.99015 7.08492 7.27252 7.47103 7.62984 7.87248 7.93155 8.17260 8.60248 8.86007 10.06562 10.27696 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.003910 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.153496 B = 7158.929627 C = 7613.672709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.004 4.004 3 C -0.141 4.141 4 C 0.526 3.474 5 O -0.508 6.508 6 O -0.516 6.516 7 C -0.071 4.071 8 C -0.143 4.143 9 C -0.068 4.068 10 C -0.033 4.033 11 C -0.001 4.001 12 C -0.298 4.298 13 C 0.124 3.876 14 N -0.482 5.482 15 C 0.255 3.745 16 C -0.432 4.432 17 H 0.083 0.917 18 C 0.069 3.931 19 N -0.715 5.715 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.252 4.252 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.410 0.590 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.274 0.726 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 12.942 1.128 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.005 4.005 3 C -0.142 4.142 4 C 0.372 3.628 5 O -0.398 6.398 6 O -0.328 6.328 7 C -0.089 4.089 8 C -0.161 4.161 9 C -0.086 4.086 10 C -0.033 4.033 11 C -0.008 4.008 12 C -0.321 4.321 13 C -0.041 4.041 14 N -0.195 5.195 15 C 0.131 3.869 16 C -0.463 4.463 17 H 0.101 0.899 18 C -0.156 4.156 19 N -0.336 5.336 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.275 4.275 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.268 0.732 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.085 0.915 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.108 11.602 1.204 12.733 hybrid contribution 0.375 0.806 -0.441 0.993 sum 5.483 12.408 0.763 13.587 Atomic orbital electron populations 1.21219 0.89726 1.03928 1.03098 1.20112 0.97036 0.90237 0.93068 1.18751 0.93583 0.89439 1.12426 1.20991 0.85423 0.84155 0.72268 1.90855 1.15285 1.87540 1.46084 1.84570 1.45485 1.17134 1.85621 1.21320 0.92495 0.98740 0.96385 1.21019 1.00068 0.91941 1.03047 1.21605 0.93485 0.98546 0.95011 1.18936 0.92779 0.92547 0.99021 1.18435 0.95225 0.90730 0.96373 1.21337 1.04427 1.00695 1.05656 1.22467 0.96379 0.89455 0.95779 1.68720 1.16624 1.29268 1.04850 1.18528 0.87658 0.90279 0.90483 1.19592 1.15944 0.97271 1.13483 0.89874 1.26058 0.94182 0.99592 0.95782 1.70119 1.13097 1.23756 1.26617 0.86395 0.79464 0.79847 0.81177 1.18920 1.20182 1.18907 1.21806 1.05934 0.96053 1.03720 0.90706 0.89911 0.90302 0.73190 0.84987 0.85363 0.85055 0.88485 0.86250 0.91499 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 7.26 36.00 0.26 -1.87 16 2 C 0.00 -0.07 5.92 -103.87 -0.61 -0.68 16 3 C -0.14 -2.10 5.87 -105.02 -0.62 -2.72 16 4 C 0.53 7.22 8.20 34.62 0.28 7.51 16 5 O -0.51 -8.08 14.12 -19.24 -0.27 -8.35 16 6 O -0.52 -5.09 12.69 -40.53 -0.51 -5.61 16 7 C -0.07 -0.91 9.61 -39.12 -0.38 -1.28 16 8 C -0.14 -1.82 10.02 -39.69 -0.40 -2.21 16 9 C -0.07 -1.06 9.54 -39.16 -0.37 -1.43 16 10 C -0.03 -0.60 5.51 -104.95 -0.58 -1.18 16 11 C 0.00 -0.03 4.73 -104.64 -0.49 -0.53 16 12 C -0.30 -6.47 7.88 -38.81 -0.31 -6.78 16 13 C 0.12 2.95 11.17 -17.60 -0.20 2.75 16 14 N -0.48 -13.04 7.85 -11.21 -0.09 -13.13 16 15 C 0.26 6.81 6.55 -85.02 -0.56 6.25 16 16 C -0.43 -11.32 9.14 -37.70 -0.34 -11.67 16 17 H 0.08 2.03 7.85 -52.49 -0.41 1.61 16 18 C 0.07 1.74 5.50 -17.35 -0.10 1.64 16 19 N -0.71 -18.81 11.46 55.55 0.64 -18.17 16 20 Si 0.91 18.29 29.56 -169.99 -5.02 13.26 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 24 C -0.25 -5.97 9.36 -38.34 -0.36 -6.33 16 25 H 0.07 1.24 7.87 -51.93 -0.41 0.84 16 26 H 0.08 1.41 5.85 -51.93 -0.30 1.10 16 27 H 0.08 1.49 6.00 -51.93 -0.31 1.18 16 28 H 0.41 2.10 9.11 45.56 0.42 2.51 16 29 H 0.13 1.35 7.62 -52.49 -0.40 0.95 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.95 8.05 -52.49 -0.42 1.53 16 32 H 0.10 1.91 7.13 -52.48 -0.37 1.54 16 33 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 34 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -30.46 305.18 -8.05 -38.50 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -2.62 Total: 7.42 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -4.76 Total: -18.52 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.55 Total: -31.30 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.79 Total: -13.96 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.46 -8.05 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245302333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.113 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds