Wall clock time and date at job start Tue Mar 31 2020 06:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 S 1.81408 * 109.46853 * 270.21387 * 7 6 5 9 9 O 1.42098 * 110.54201 * 291.62318 * 8 7 6 10 10 O 1.42097 * 110.54075 * 68.37476 * 8 7 6 11 11 N 1.65600 * 104.44928 * 179.97438 * 8 7 6 12 12 C 1.46498 * 119.99890 * 89.99819 * 11 8 7 13 13 C 1.46501 * 120.00092 * 270.00016 * 11 8 7 14 14 C 1.50704 * 109.47169 * 94.99990 * 13 11 8 15 15 H 1.07998 * 120.00012 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00105 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99862 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 89.99501 * 18 16 14 20 20 H 1.48499 * 109.46963 * 209.99264 * 18 16 14 21 21 H 1.48494 * 109.46810 * 329.99545 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 30 30 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 31 31 H 1.09000 * 109.46980 * 90.00289 * 12 11 8 32 32 H 1.09001 * 109.46933 * 210.00076 * 12 11 8 33 33 H 1.08997 * 109.47468 * 330.00124 * 12 11 8 34 34 H 1.08998 * 109.47146 * 215.00012 * 13 11 8 35 35 H 1.09005 * 109.46996 * 335.00216 * 13 11 8 36 36 H 0.97002 * 119.99616 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 16 4.6364 -3.0257 -1.7109 9 8 3.4171 -3.3877 -2.3445 10 8 5.5597 -2.1508 -2.3443 11 7 5.4618 -4.4540 -1.5660 12 6 4.7283 -5.7206 -1.5018 13 6 6.9254 -4.4511 -1.5020 14 6 7.3653 -4.4662 -0.0607 15 1 6.6283 -4.4766 0.7287 16 6 8.7085 -4.4659 0.2502 17 7 9.6060 -4.4527 -0.7111 18 14 9.2537 -4.4854 2.0368 19 1 9.4023 -5.8906 2.4936 20 1 10.5559 -3.7830 2.1646 21 1 8.2364 -3.7982 2.8722 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2866 -2.3718 0.5133 30 1 3.7450 -3.2618 0.5132 31 1 4.5914 -6.1126 -2.5095 32 1 5.2935 -6.4379 -0.9066 33 1 3.7546 -5.5536 -1.0414 34 1 7.3130 -5.3344 -2.0095 35 1 7.3086 -3.5545 -1.9894 36 1 10.5510 -4.4528 -0.4923 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259743071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:23 Heat of formation + Delta-G solvation = -55.722661 kcal Electronic energy + Delta-G solvation = -20382.193690 eV Core-core repulsion = 17251.311279 eV Total energy + Delta-G solvation = -3130.882411 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.42655 -36.53100 -35.59420 -35.23687 -33.63176 -32.52806 -32.01141 -27.82125 -27.57241 -26.75047 -25.09793 -22.43166 -22.07612 -20.79304 -18.20798 -16.89995 -16.70969 -16.42489 -15.84677 -15.76448 -15.24210 -14.81699 -14.52414 -13.83702 -13.52167 -13.34250 -13.21815 -13.01971 -12.63686 -12.30493 -12.21663 -12.18967 -12.08742 -11.70600 -11.49332 -11.22179 -11.19262 -11.11572 -10.99547 -10.81772 -10.62484 -10.49693 -10.08965 -9.82679 -8.78845 -8.58797 -8.53918 -7.98888 -6.15750 -4.24192 0.71386 1.37715 1.46510 3.21692 3.28534 3.29937 3.37910 3.73711 4.28758 4.35058 4.59256 4.68681 4.81706 4.91676 5.12866 5.17782 5.24012 5.35723 5.48400 5.50455 5.55602 5.64806 5.73110 5.80585 6.06581 6.10467 6.10934 6.26023 6.46004 6.53164 6.53329 6.57832 6.98887 7.31485 7.38654 7.60639 7.80396 8.09122 8.80565 9.42708 10.91934 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.005462 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.798482 B = 5124.884161 C = 5834.200973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.121 4.121 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.076 4.076 7 C -0.593 4.593 8 S 2.612 3.388 9 O -0.973 6.973 10 O -0.949 6.949 11 N -0.990 5.990 12 C 0.104 3.896 13 C 0.241 3.759 14 C -0.550 4.550 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.111 4.111 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.134 0.866 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.266 0.734 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.286 6.475 2.930 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.139 4.139 4 C -0.132 4.132 5 C -0.130 4.130 6 C -0.078 4.078 7 C -0.718 4.718 8 S 2.704 3.296 9 O -0.963 6.963 10 O -0.940 6.940 11 N -0.829 5.829 12 C -0.042 4.042 13 C 0.119 3.881 14 C -0.589 4.589 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.721 3.279 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.130 4.130 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.170 0.830 30 H 0.151 0.849 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.295 6.840 2.083 15.984 hybrid contribution 0.647 -0.285 1.878 2.007 sum -13.649 6.556 3.961 15.651 Atomic orbital electron populations 1.20790 0.91022 1.02683 1.02507 1.19884 0.96169 0.92949 0.99905 1.21071 0.94311 0.97449 1.01091 1.21148 0.94236 0.97976 0.99836 1.21282 1.00911 0.91737 0.99052 1.19121 0.93483 0.92951 1.02261 1.29843 1.10036 1.03131 1.28832 1.04942 0.73509 0.74119 0.77032 1.93514 1.47595 1.82748 1.72469 1.93558 1.62396 1.66077 1.71941 1.57360 1.17879 1.18975 1.88666 1.21261 0.94973 0.86904 1.01109 1.19283 0.71657 0.99907 0.97288 1.21588 0.92075 1.52821 0.92436 0.92012 1.24962 0.96551 0.94727 0.97529 1.69938 1.01422 1.49139 1.31893 0.86571 0.78298 0.78264 0.84746 1.20484 1.20971 1.19805 1.21038 0.93156 0.98291 1.00496 0.90983 0.91457 0.91586 0.85953 0.85532 0.84837 0.83019 0.84866 0.93474 0.90734 0.92831 0.94144 0.92641 0.92455 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 4 C -0.11 -1.46 10.05 -39.58 -0.40 -1.86 16 5 C -0.11 -1.69 9.70 -39.58 -0.38 -2.07 16 6 C -0.08 -1.21 5.14 -104.63 -0.54 -1.75 16 7 C -0.59 -9.77 6.30 36.00 0.23 -9.54 16 8 S 2.61 51.96 5.36 -107.50 -0.58 51.38 16 9 O -0.97 -19.95 17.09 -57.54 -0.98 -20.93 16 10 O -0.95 -22.09 16.53 -57.54 -0.95 -23.05 16 11 N -0.99 -20.53 3.10 -123.05 -0.38 -20.91 16 12 C 0.10 1.78 10.22 59.85 0.61 2.39 16 13 C 0.24 5.98 5.39 -5.19 -0.03 5.96 16 14 C -0.55 -14.23 9.38 -34.44 -0.32 -14.55 16 15 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 18 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.11 -1.58 9.36 -39.58 -0.37 -1.95 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.07 0.49 8.09 -51.92 -0.42 0.07 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 29 H 0.15 2.57 8.09 -51.92 -0.42 2.15 16 30 H 0.13 1.85 8.09 -51.93 -0.42 1.43 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 34 H 0.04 1.05 8.11 -51.93 -0.42 0.62 16 35 H 0.06 1.51 6.81 -51.93 -0.35 1.16 16 36 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -32.19 330.58 -9.49 -41.68 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.36 Total: 1.78 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -1.94 Total: -25.90 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.36 Total: -45.30 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.93 Total: -43.98 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.58 Total: 51.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.19 -9.49 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259743071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.044 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds