Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 S 1.81408 * 109.46853 * 270.21387 * 7 6 5 9 9 O 1.42098 * 110.54201 * 291.62318 * 8 7 6 10 10 O 1.42097 * 110.54075 * 68.37476 * 8 7 6 11 11 N 1.65600 * 104.44928 * 179.97438 * 8 7 6 12 12 C 1.46498 * 119.99890 * 89.99819 * 11 8 7 13 13 C 1.46501 * 120.00092 * 270.00016 * 11 8 7 14 14 C 1.50704 * 109.47169 * 94.99990 * 13 11 8 15 15 H 1.07998 * 120.00012 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00105 * 180.02562 * 14 13 11 17 17 N 1.31520 * 119.99862 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46940 * 89.99501 * 18 16 14 20 20 H 1.48499 * 109.46963 * 209.99264 * 18 16 14 21 21 H 1.48494 * 109.46810 * 329.99545 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 30 30 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 31 31 H 1.09000 * 109.46980 * 90.00289 * 12 11 8 32 32 H 1.09001 * 109.46933 * 210.00076 * 12 11 8 33 33 H 1.08997 * 109.47468 * 330.00124 * 12 11 8 34 34 H 1.08998 * 109.47146 * 215.00012 * 13 11 8 35 35 H 1.09005 * 109.46996 * 335.00216 * 13 11 8 36 36 H 0.97002 * 119.99616 * 180.02562 * 17 16 14 37 37 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 16 4.6364 -3.0257 -1.7109 9 8 3.4171 -3.3877 -2.3445 10 8 5.5597 -2.1508 -2.3443 11 7 5.4618 -4.4540 -1.5660 12 6 4.7283 -5.7206 -1.5018 13 6 6.9254 -4.4511 -1.5020 14 6 7.3653 -4.4662 -0.0607 15 1 6.6283 -4.4766 0.7287 16 6 8.7085 -4.4659 0.2502 17 7 9.6060 -4.4527 -0.7111 18 14 9.2537 -4.4854 2.0368 19 1 9.4023 -5.8906 2.4936 20 1 10.5559 -3.7830 2.1646 21 1 8.2364 -3.7982 2.8722 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 5.2866 -2.3718 0.5133 30 1 3.7450 -3.2618 0.5132 31 1 4.5914 -6.1126 -2.5095 32 1 5.2935 -6.4379 -0.9066 33 1 3.7546 -5.5536 -1.0414 34 1 7.3130 -5.3344 -2.0095 35 1 7.3086 -3.5545 -1.9894 36 1 10.5510 -4.4528 -0.4923 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259743071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = -76.359073 kcal Electronic energy + Delta-G solvation = -20383.088552 eV Core-core repulsion = 17251.311279 eV Total energy + Delta-G solvation = -3131.777273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43537 -38.19017 -37.30048 -36.91958 -34.68090 -34.49334 -33.00558 -29.67317 -28.68560 -27.67860 -26.77636 -24.22826 -23.15461 -21.86044 -19.81324 -18.64967 -18.47515 -17.67395 -17.35867 -17.16555 -16.59773 -16.24950 -15.83001 -15.20432 -14.94417 -14.63037 -14.34301 -14.05972 -13.96308 -13.90914 -13.74737 -13.38770 -13.22963 -13.17066 -13.02319 -12.92692 -12.88145 -12.47685 -12.38490 -12.24209 -12.05515 -11.95967 -11.80275 -11.69320 -10.60155 -9.94137 -9.72328 -9.49984 -8.19016 -6.35107 -0.78330 0.35139 0.38072 1.43300 1.44041 1.54100 1.78363 2.40682 2.68832 2.88199 3.12287 3.17981 3.40072 3.76220 3.97974 4.07508 4.13200 4.18703 4.41057 4.48432 4.57871 4.70659 4.75472 4.83132 4.86683 4.92327 5.06664 5.06905 5.27397 5.28598 5.44403 5.45270 5.50209 5.59196 5.72408 5.88433 6.01331 6.05977 6.77978 7.36243 8.89167 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.005462 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.798482 B = 5124.884161 C = 5834.200973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.566 4.566 8 S 2.610 3.390 9 O -0.983 6.983 10 O -0.995 6.995 11 N -0.999 5.999 12 C 0.093 3.907 13 C 0.254 3.746 14 C -0.554 4.554 15 H 0.077 0.923 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.260 1.260 22 C -0.125 4.125 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.267 0.733 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 7.309 5.055 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.158 4.158 6 C -0.107 4.107 7 C -0.696 4.696 8 S 2.707 3.293 9 O -0.973 6.973 10 O -0.986 6.986 11 N -0.837 5.837 12 C -0.052 4.052 13 C 0.130 3.870 14 C -0.593 4.593 15 H 0.095 0.905 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.184 1.184 22 C -0.144 4.144 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.141 0.859 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.746 7.634 4.162 18.868 hybrid contribution 1.272 -0.450 1.195 1.802 sum -15.474 7.184 5.356 17.881 Atomic orbital electron populations 1.20879 0.88475 1.04226 1.03393 1.20352 0.98096 0.92453 0.98352 1.21536 0.93982 0.98836 0.99071 1.21491 0.95143 0.98007 0.98923 1.21440 1.00819 0.92925 1.00593 1.19200 0.94429 0.92414 1.04650 1.29517 1.10633 1.04858 1.24632 1.04839 0.72728 0.73304 0.78432 1.93485 1.47173 1.82739 1.73904 1.93496 1.63694 1.67056 1.74338 1.57239 1.16255 1.20810 1.89415 1.21532 0.96028 0.85561 1.02074 1.18823 0.74141 0.97326 0.96694 1.21934 0.92533 1.51778 0.93021 0.90464 1.25875 0.96758 0.94394 1.01894 1.70080 1.01768 1.50587 1.34286 0.85496 0.77825 0.78577 0.79473 1.19635 1.21182 1.18387 1.21317 0.92560 0.99876 1.00627 0.90265 0.90639 0.89463 0.82483 0.83144 0.85924 0.83640 0.81859 0.92849 0.90407 0.89718 0.96153 0.96067 0.92432 0.84223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 71.24 0.71 -0.91 16 2 C -0.09 -2.02 5.88 -19.87 -0.12 -2.13 16 3 C -0.12 -2.36 9.70 22.27 0.22 -2.14 16 4 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 5 C -0.14 -4.18 9.70 22.27 0.22 -3.97 16 6 C -0.10 -3.24 5.14 -19.87 -0.10 -3.34 16 7 C -0.57 -18.25 6.30 71.24 0.45 -17.80 16 8 S 2.61 105.22 5.36 -56.49 -0.30 104.92 16 9 O -0.98 -40.01 17.09 -127.65 -2.18 -42.20 16 10 O -1.00 -48.61 16.53 -127.65 -2.11 -50.72 16 11 N -1.00 -42.03 3.10 -543.22 -1.68 -43.71 16 12 C 0.09 3.12 10.22 127.77 1.31 4.43 16 13 C 0.25 13.11 5.39 85.63 0.46 13.57 16 14 C -0.55 -28.88 9.38 25.60 0.24 -28.64 16 15 H 0.08 3.70 7.81 -2.91 -0.02 3.67 16 16 C 0.01 0.57 5.46 84.65 0.46 1.03 16 17 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 18 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 C -0.12 -3.30 9.36 22.27 0.21 -3.09 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.09 0.90 8.09 -2.38 -0.02 0.88 16 26 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 29 H 0.15 4.91 8.09 -2.39 -0.02 4.89 16 30 H 0.16 4.16 8.09 -2.39 -0.02 4.14 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 33 H 0.08 2.28 7.79 -2.39 -0.02 2.26 16 34 H 0.02 1.11 8.11 -2.39 -0.02 1.09 16 35 H 0.02 1.23 6.81 -2.38 -0.02 1.22 16 36 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -71.05 330.58 1.35 -69.70 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.04 Total: 17.71 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 4.28 Total: -45.57 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -1.40 Total: -97.47 kcal Atomic # 8 Polarization: -88.62 SS G_CDS: -4.29 Total: -92.92 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 105.22 SS G_CDS: -0.30 Total: 104.92 kcal Total: -71.05 1.35 -69.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259743071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.660 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds