Wall clock time and date at job start Tue Mar 31 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38256 * 120.00019 * 2 1 4 4 C 1.38219 * 119.99749 * 180.23356 * 3 2 1 5 5 C 1.38257 * 119.99683 * 359.47784 * 4 3 2 6 6 C 1.38204 * 120.00288 * 0.26393 * 5 4 3 7 7 S 1.76201 * 120.00015 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40509 * 228.56027 * 7 6 5 9 9 O 1.42098 * 106.40140 * 1.48412 * 7 6 5 10 10 N 1.65604 * 107.21551 * 115.02293 * 7 6 5 11 11 C 1.46495 * 120.00008 * 98.45308 * 10 7 6 12 12 C 1.46508 * 119.99883 * 278.44855 * 10 7 6 13 13 C 1.50702 * 109.46648 * 95.00229 * 12 10 7 14 14 H 1.07999 * 120.00294 * 0.02562 * 13 12 10 15 15 C 1.37877 * 119.99462 * 179.97438 * 13 12 10 16 16 N 1.31519 * 120.00189 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99866 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47061 * 60.00195 * 17 15 13 19 19 H 1.48497 * 109.47161 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47115 * 300.00441 * 17 15 13 21 21 C 1.38207 * 119.99781 * 179.71565 * 2 1 3 22 22 C 1.50703 * 120.00080 * 0.02562 * 21 2 1 23 23 H 1.08995 * 109.47381 * 270.28272 * 1 2 3 24 24 H 1.09003 * 109.47179 * 30.28277 * 1 2 3 25 25 H 1.09004 * 109.47378 * 150.27884 * 1 2 3 26 26 H 1.07994 * 120.00226 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.99899 * 179.76338 * 4 3 2 28 28 H 1.07998 * 119.99528 * 180.27796 * 5 4 3 29 29 H 1.09003 * 109.47329 * 95.20763 * 11 10 7 30 30 H 1.09008 * 109.47190 * 215.20229 * 11 10 7 31 31 H 1.08997 * 109.47532 * 335.20051 * 11 10 7 32 32 H 1.08996 * 109.46976 * 214.99865 * 12 10 7 33 33 H 1.08994 * 109.46981 * 335.00181 * 12 10 7 34 34 H 0.97000 * 119.99769 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.46833 * 264.55502 * 22 21 2 36 36 H 1.08997 * 109.47146 * 24.55351 * 22 21 2 37 37 H 1.08999 * 109.47080 * 144.56025 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 0.0012 6 6 3.5806 -1.1970 0.0065 7 16 4.4616 -2.7229 0.0149 8 8 3.8818 -3.5266 -1.0035 9 8 5.8423 -2.3889 0.0497 10 7 4.1260 -3.4747 1.4518 11 6 3.1025 -4.5213 1.5093 12 6 4.8527 -3.0933 2.6654 13 6 4.0534 -2.0683 3.4281 14 1 3.0995 -1.7347 3.0472 15 6 4.5397 -1.5572 4.6127 16 7 5.7007 -1.9645 5.0773 17 14 3.5494 -0.2861 5.5578 18 1 2.2318 -0.8615 5.9294 19 1 4.2859 0.1005 6.7880 20 1 3.3435 0.9135 4.7071 21 6 2.1980 -1.1969 0.0059 22 6 1.4445 -2.5020 0.0118 23 1 -0.3634 0.0051 1.0276 24 1 -0.3634 0.8875 -0.5182 25 1 -0.3634 -0.8925 -0.5095 26 1 1.6584 2.1326 -0.0004 27 1 4.1205 2.1325 -0.0087 28 1 5.3517 -0.0001 0.0019 29 1 3.5759 -5.4983 1.4112 30 1 2.5790 -4.4655 2.4638 31 1 2.3910 -4.3789 0.6959 32 1 5.0045 -3.9737 3.2898 33 1 5.8194 -2.6704 2.3922 34 1 6.0429 -1.6046 5.9105 35 1 1.3469 -2.8605 1.0366 36 1 0.4535 -2.3513 -0.4163 37 1 1.9881 -3.2381 -0.5804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260991627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:29 Heat of formation + Delta-G solvation = -46.519187 kcal Electronic energy + Delta-G solvation = -21434.890879 eV Core-core repulsion = 18304.407560 eV Total energy + Delta-G solvation = -3130.483319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.32910 -36.80577 -35.60678 -35.25878 -33.20069 -32.49891 -32.10832 -28.11667 -27.31357 -26.27533 -25.01113 -22.73159 -22.17905 -20.68152 -18.25336 -17.13633 -16.82111 -16.32902 -15.90585 -15.53474 -15.09398 -14.42286 -14.19057 -13.80562 -13.49586 -13.32810 -12.88070 -12.84209 -12.66994 -12.32230 -12.24067 -11.96553 -11.88198 -11.62351 -11.58375 -11.18950 -11.15225 -11.11253 -10.79177 -10.67422 -10.51301 -10.13931 -10.05380 -9.78406 -8.90808 -8.50059 -8.33646 -8.04059 -6.11705 -4.17879 1.00500 1.27478 1.58749 3.25200 3.30496 3.32341 3.55124 3.84609 4.34828 4.36749 4.76901 4.97612 5.00976 5.16425 5.22967 5.23289 5.39269 5.55643 5.58892 5.65557 5.79574 5.84107 5.89699 6.01497 6.08556 6.15015 6.24945 6.43477 6.45155 6.54320 6.59284 6.67416 7.17102 7.30270 7.39640 7.59073 7.85201 8.13327 8.86665 9.48257 10.96293 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.009409 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.326767 B = 2975.125807 C = 3875.096737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.146 4.146 5 C -0.013 4.013 6 C -0.654 4.654 7 S 2.694 3.306 8 O -0.979 6.979 9 O -0.962 6.962 10 N -0.984 5.984 11 C 0.087 3.913 12 C 0.245 3.755 13 C -0.539 4.539 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.023 3.977 22 C -0.182 4.182 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.140 0.860 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 2.240 -9.028 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.165 4.165 5 C -0.033 4.033 6 C -0.740 4.740 7 S 2.784 3.216 8 O -0.969 6.969 9 O -0.953 6.953 10 N -0.824 5.824 11 C -0.059 4.059 12 C 0.123 3.877 13 C -0.578 4.578 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.022 3.978 22 C -0.237 4.237 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.158 0.842 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.256 1.932 -9.505 12.737 hybrid contribution -0.957 1.563 1.186 2.183 sum -9.213 3.495 -8.319 12.896 Atomic orbital electron populations 1.20834 0.91137 1.02594 1.02446 1.19771 0.96033 0.92806 1.03218 1.21178 0.94433 0.97290 0.95950 1.21158 0.94345 0.98107 1.02898 1.20890 1.00385 0.91040 0.90945 1.30873 1.05477 1.20922 1.16690 1.01792 0.73620 0.73399 0.72810 1.93451 1.79104 1.67724 1.56640 1.93526 1.30561 1.84624 1.86551 1.57207 1.50763 1.47976 1.26465 1.21666 0.91188 0.89907 1.03119 1.19251 0.91808 0.96478 0.80181 1.21508 1.05838 1.23729 1.06745 0.92043 1.24916 0.94950 0.96598 0.97247 1.69921 1.18237 1.43268 1.21395 0.86664 0.80144 0.82001 0.79308 1.20196 1.21144 1.20143 1.19236 0.91434 0.95386 0.91745 1.21983 1.01885 0.95277 1.04582 0.91114 0.91853 0.91043 0.85972 0.85565 0.84231 0.93441 0.90829 0.91052 0.93955 0.93137 0.92528 0.88897 0.90079 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.59 36.01 0.35 -0.95 16 2 C -0.12 -1.79 5.88 -104.63 -0.62 -2.41 16 3 C -0.07 -1.03 9.70 -39.58 -0.38 -1.42 16 4 C -0.15 -2.31 10.05 -39.58 -0.40 -2.71 16 5 C -0.01 -0.24 9.55 -39.59 -0.38 -0.62 16 6 C -0.65 -12.54 5.91 -39.59 -0.23 -12.77 16 7 S 2.69 54.99 5.07 -107.50 -0.55 54.45 16 8 O -0.98 -19.57 14.38 -57.17 -0.82 -20.39 16 9 O -0.96 -22.24 15.73 -57.17 -0.90 -23.14 16 10 N -0.98 -20.34 3.12 -123.05 -0.38 -20.72 16 11 C 0.09 1.46 9.14 59.84 0.55 2.01 16 12 C 0.24 6.06 5.45 -5.19 -0.03 6.03 16 13 C -0.54 -14.19 9.38 -34.44 -0.32 -14.51 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.02 0.40 5.87 -104.62 -0.61 -0.21 16 22 C -0.18 -2.66 7.57 36.01 0.27 -2.39 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.07 0.73 5.89 -51.93 -0.31 0.42 16 26 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 27 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 28 H 0.14 2.50 7.33 -52.49 -0.38 2.11 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.20 8.11 -51.92 -0.42 0.78 16 31 H 0.07 1.04 4.09 -51.93 -0.21 0.83 16 32 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 33 H 0.05 1.37 7.05 -51.93 -0.37 1.00 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.09 1.33 6.59 -51.93 -0.34 0.99 16 36 H 0.08 0.94 5.75 -51.93 -0.30 0.65 16 37 H 0.11 1.64 3.98 -51.93 -0.21 1.43 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -31.74 309.50 -8.79 -40.53 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.61 Total: 1.56 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -1.91 Total: -28.26 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.35 Total: -45.41 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.72 Total: -43.53 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.55 Total: 54.45 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.74 -8.79 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260991627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.987 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds