Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47046 * 140.08488 * 3 2 1 5 5 C 1.36933 * 120.00026 * 267.90312 * 4 3 2 6 6 H 1.08000 * 119.99540 * 191.43961 * 5 4 3 7 7 C 1.38807 * 120.00139 * 11.43919 * 5 4 3 8 8 N 1.31622 * 120.00049 * 24.18619 * 7 5 4 9 9 Si 1.86799 * 119.99805 * 204.18605 * 7 5 4 10 10 H 1.48495 * 109.47281 * 60.00326 * 9 7 5 11 11 H 1.48505 * 109.46748 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99887 * 9 7 5 13 13 C 1.46509 * 119.99894 * 87.90455 * 4 3 2 14 14 C 1.50694 * 109.46824 * 270.00217 * 13 4 3 15 15 C 1.34513 * 126.55703 * 269.68144 * 14 13 4 16 16 Cl 1.73604 * 125.87119 * 0.02644 * 15 14 13 17 17 N 1.34388 * 108.25383 * 179.87607 * 15 14 13 18 18 C 1.31031 * 109.32410 * 0.40318 * 17 15 14 19 19 O 1.35501 * 125.75092 * 179.75362 * 18 17 15 20 20 C 1.42909 * 116.99913 * 0.02562 * 19 18 17 21 21 N 1.35860 * 108.49954 * 359.75299 * 18 17 15 22 22 C 1.46503 * 126.47937 * 180.02562 * 21 18 17 23 23 H 4.40637 * 5.51450 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47195 * 20.08821 * 3 2 1 25 25 H 1.08999 * 109.47539 * 260.08645 * 3 2 1 26 26 H 0.97002 * 119.99737 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.46501 * 29.99661 * 13 4 3 28 28 H 1.08995 * 109.46848 * 149.99756 * 13 4 3 29 29 H 1.09000 * 109.46541 * 299.99486 * 20 19 18 30 30 H 1.09000 * 109.47223 * 59.99522 * 20 19 18 31 31 H 1.08999 * 109.47031 * 180.02562 * 20 19 18 32 32 H 1.08997 * 109.47420 * 269.95525 * 22 21 18 33 33 H 1.09000 * 109.47437 * 29.96146 * 22 21 18 34 34 H 1.09000 * 109.47039 * 149.95584 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0603 -0.8863 5 6 3.4031 0.7840 -2.2001 6 1 3.9325 1.5046 -2.8059 7 6 2.9956 -0.4221 -2.7534 8 7 1.9839 -1.0792 -2.2270 9 14 3.8832 -1.1126 -4.2450 10 1 5.3127 -1.3360 -3.9109 11 1 3.2593 -2.4012 -4.6395 12 1 3.7826 -0.1493 -5.3708 13 6 3.3337 2.4155 -0.3668 14 6 2.0634 3.2092 -0.5322 15 6 1.7210 3.9613 -1.5936 16 17 2.6726 4.1904 -3.0274 17 7 0.5142 4.5021 -1.3546 18 6 0.0938 4.1196 -0.1739 19 8 -1.0809 4.4738 0.4012 20 6 -1.9349 5.3405 -0.3483 21 7 1.0342 3.3081 0.3765 22 6 0.9655 2.6602 1.6887 23 1 -1.0501 -0.0001 0.0003 24 1 3.0098 -0.9643 -0.3530 25 1 3.0093 0.1777 1.0123 26 1 1.6990 -1.9218 -2.6139 27 1 3.5952 2.3645 0.6901 28 1 4.1395 2.9005 -0.9176 29 1 -1.4144 6.2764 -0.5517 30 1 -2.2025 4.8615 -1.2901 31 1 -2.8387 5.5451 0.2255 32 1 1.4040 3.3158 2.4410 33 1 -0.0760 2.4620 1.9420 34 1 1.5173 1.7207 1.6593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333873983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = 120.234662 kcal Electronic energy + Delta-G solvation = -20804.075229 eV Core-core repulsion = 17575.238851 eV Total energy + Delta-G solvation = -3228.836379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57678 -38.03400 -36.14707 -35.79290 -33.48306 -31.75564 -31.54386 -29.08179 -27.46202 -26.39870 -26.05899 -25.09535 -21.90898 -20.82080 -19.62982 -17.65743 -17.52896 -16.55218 -16.20489 -15.93410 -15.18716 -14.66924 -14.32041 -13.91317 -13.60172 -13.46777 -13.35729 -12.85317 -12.57876 -12.17805 -11.91402 -11.49198 -11.44856 -11.32974 -11.03759 -10.71962 -10.54051 -10.46454 -10.24018 -9.93117 -9.55652 -9.07533 -8.93658 -8.85777 -8.44447 -7.37915 -7.10667 -5.80915 -3.17288 2.34631 2.54968 2.71569 3.40147 3.43692 3.46328 3.49197 4.04844 4.15875 4.30878 4.54335 5.09556 5.25569 5.30623 5.38072 5.40683 5.43335 5.56790 5.62461 5.69412 5.74554 5.81428 5.92642 6.34819 6.47882 6.56153 6.77860 7.09613 7.17856 7.35878 7.78714 7.79216 8.19155 8.34247 9.06057 9.15288 9.71252 10.13207 11.22222 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.007464 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.224281 B = 3750.599245 C = 4483.107397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.093 4.093 3 C 0.263 3.737 4 N -0.569 5.569 5 C -0.256 4.256 6 H 0.084 0.916 7 C 0.005 3.995 8 N -0.888 5.888 9 Si 0.899 3.101 10 H -0.283 1.283 11 H -0.293 1.293 12 H -0.283 1.283 13 C 0.211 3.789 14 C 0.013 3.987 15 C 0.066 3.934 16 Cl -0.017 7.017 17 N -0.524 5.524 18 C 0.390 3.610 19 O -0.302 6.302 20 C 0.056 3.944 21 N -0.437 5.437 22 C 0.082 3.918 23 H 0.184 0.816 24 H 0.103 0.897 25 H 0.036 0.964 26 H 0.254 0.746 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 8.405 8.137 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.096 4.096 3 C 0.138 3.862 4 N -0.287 5.287 5 C -0.385 4.385 6 H 0.102 0.898 7 C -0.194 4.194 8 N -0.531 5.531 9 Si 0.729 3.271 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.209 1.209 13 C 0.082 3.918 14 C -0.104 4.104 15 C -0.086 4.086 16 Cl 0.011 6.989 17 N -0.260 5.260 18 C 0.090 3.910 19 O -0.208 6.208 20 C -0.040 4.040 21 N -0.131 5.131 22 C -0.061 4.061 23 H 0.202 0.798 24 H 0.121 0.879 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.383 8.620 7.781 11.854 hybrid contribution -0.120 -0.821 -0.904 1.227 sum -2.502 7.798 6.877 10.694 Atomic orbital electron populations 1.24085 0.95221 1.05196 1.07256 1.24148 0.95087 0.96013 0.94328 1.18060 0.82906 0.94630 0.90627 1.44646 1.73672 1.01745 1.08617 1.19287 1.30227 1.01589 0.87351 0.89774 1.24843 0.96761 0.99494 0.98343 1.70139 1.23390 1.16956 1.42581 0.86402 0.79688 0.78336 0.82716 1.20921 1.21858 1.20916 1.19661 0.89151 0.84809 0.98153 1.22657 0.95163 1.02590 0.90001 1.19767 0.93164 1.04590 0.91096 1.98313 1.67876 1.96549 1.36132 1.69960 1.13033 1.30096 1.12933 1.19995 0.86971 0.95677 0.88356 1.85798 1.25330 1.66109 1.43536 1.22843 0.91721 0.92687 0.96739 1.44710 1.14476 1.37743 1.16204 1.22036 1.04301 0.98655 0.81074 0.79838 0.87946 0.94625 0.93518 0.92831 0.89764 0.92307 0.92195 0.88440 0.91350 0.89846 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.63 18.89 29.55 0.56 -6.07 16 2 C -0.09 -2.11 9.32 -37.12 -0.35 -2.46 16 3 C 0.26 5.74 5.03 -6.83 -0.03 5.71 16 4 N -0.57 -12.89 2.47 -177.95 -0.44 -13.33 16 5 C -0.26 -6.51 9.69 -15.06 -0.15 -6.65 16 6 H 0.08 2.13 7.92 -52.49 -0.42 1.71 16 7 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 8 N -0.89 -24.54 9.28 55.49 0.51 -24.02 16 9 Si 0.90 21.32 29.62 -169.99 -5.03 16.28 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.21 4.05 5.66 -5.19 -0.03 4.02 16 14 C 0.01 0.25 6.41 -81.30 -0.52 -0.27 16 15 C 0.07 1.42 7.69 -17.75 -0.14 1.28 16 16 Cl -0.02 -0.34 28.87 -51.86 -1.50 -1.83 16 17 N -0.52 -11.02 10.64 -11.85 -0.13 -11.14 16 18 C 0.39 7.50 8.51 -89.18 -0.76 6.74 16 19 O -0.30 -4.94 10.49 -18.19 -0.19 -5.13 16 20 C 0.06 0.70 10.67 101.05 1.08 1.77 16 21 N -0.44 -8.07 3.20 -121.26 -0.39 -8.46 16 22 C 0.08 1.19 10.05 59.85 0.60 1.79 16 23 H 0.18 3.65 7.80 -54.08 -0.42 3.23 16 24 H 0.10 2.48 6.34 -51.93 -0.33 2.16 16 25 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16 26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.05 0.87 7.68 -51.93 -0.40 0.47 16 28 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.42 5.16 -51.93 -0.27 1.15 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -31.10 311.94 -6.16 -37.26 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.88 Total: -0.22 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 0.18 Total: 5.89 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.44 Total: -56.95 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.19 Total: -5.13 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.10 -6.16 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333873983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.492 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds