Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47046 * 140.08488 * 3 2 1 5 5 C 1.36933 * 120.00026 * 267.90312 * 4 3 2 6 6 H 1.08000 * 119.99540 * 191.43961 * 5 4 3 7 7 C 1.38807 * 120.00139 * 11.43919 * 5 4 3 8 8 N 1.31622 * 120.00049 * 24.18619 * 7 5 4 9 9 Si 1.86799 * 119.99805 * 204.18605 * 7 5 4 10 10 H 1.48495 * 109.47281 * 60.00326 * 9 7 5 11 11 H 1.48505 * 109.46748 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99887 * 9 7 5 13 13 C 1.46509 * 119.99894 * 87.90455 * 4 3 2 14 14 C 1.50694 * 109.46824 * 270.00217 * 13 4 3 15 15 C 1.34513 * 126.55703 * 269.68144 * 14 13 4 16 16 Cl 1.73604 * 125.87119 * 0.02644 * 15 14 13 17 17 N 1.34388 * 108.25383 * 179.87607 * 15 14 13 18 18 C 1.31031 * 109.32410 * 0.40318 * 17 15 14 19 19 O 1.35501 * 125.75092 * 179.75362 * 18 17 15 20 20 C 1.42909 * 116.99913 * 0.02562 * 19 18 17 21 21 N 1.35860 * 108.49954 * 359.75299 * 18 17 15 22 22 C 1.46503 * 126.47937 * 180.02562 * 21 18 17 23 23 H 4.40637 * 5.51450 * 180.02562 * 4 1 2 24 24 H 1.09003 * 109.47195 * 20.08821 * 3 2 1 25 25 H 1.08999 * 109.47539 * 260.08645 * 3 2 1 26 26 H 0.97002 * 119.99737 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.46501 * 29.99661 * 13 4 3 28 28 H 1.08995 * 109.46848 * 149.99756 * 13 4 3 29 29 H 1.09000 * 109.46541 * 299.99486 * 20 19 18 30 30 H 1.09000 * 109.47223 * 59.99522 * 20 19 18 31 31 H 1.08999 * 109.47031 * 180.02562 * 20 19 18 32 32 H 1.08997 * 109.47420 * 269.95525 * 22 21 18 33 33 H 1.09000 * 109.47437 * 29.96146 * 22 21 18 34 34 H 1.09000 * 109.47039 * 149.95584 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0603 -0.8863 5 6 3.4031 0.7840 -2.2001 6 1 3.9325 1.5046 -2.8059 7 6 2.9956 -0.4221 -2.7534 8 7 1.9839 -1.0792 -2.2270 9 14 3.8832 -1.1126 -4.2450 10 1 5.3127 -1.3360 -3.9109 11 1 3.2593 -2.4012 -4.6395 12 1 3.7826 -0.1493 -5.3708 13 6 3.3337 2.4155 -0.3668 14 6 2.0634 3.2092 -0.5322 15 6 1.7210 3.9613 -1.5936 16 17 2.6726 4.1904 -3.0274 17 7 0.5142 4.5021 -1.3546 18 6 0.0938 4.1196 -0.1739 19 8 -1.0809 4.4738 0.4012 20 6 -1.9349 5.3405 -0.3483 21 7 1.0342 3.3081 0.3765 22 6 0.9655 2.6602 1.6887 23 1 -1.0501 -0.0001 0.0003 24 1 3.0098 -0.9643 -0.3530 25 1 3.0093 0.1777 1.0123 26 1 1.6990 -1.9218 -2.6139 27 1 3.5952 2.3645 0.6901 28 1 4.1395 2.9005 -0.9176 29 1 -1.4144 6.2764 -0.5517 30 1 -2.2025 4.8615 -1.2901 31 1 -2.8387 5.5451 0.2255 32 1 1.4040 3.3158 2.4410 33 1 -0.0760 2.4620 1.9420 34 1 1.5173 1.7207 1.6593 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333873983.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = 100.423963 kcal Electronic energy + Delta-G solvation = -20804.934286 eV Core-core repulsion = 17575.238851 eV Total energy + Delta-G solvation = -3229.695435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.03314 -39.31190 -37.86285 -37.34651 -34.90494 -33.48280 -33.34582 -30.67551 -28.61325 -27.93212 -27.60360 -26.66635 -23.65870 -22.22212 -21.12326 -19.33069 -18.99263 -18.23804 -17.61864 -17.32149 -16.90721 -16.01848 -15.82948 -15.41514 -15.22462 -15.06754 -14.94930 -14.21907 -14.00133 -13.58622 -13.27208 -13.13446 -12.91947 -12.72653 -12.67271 -12.50450 -12.27793 -11.98355 -11.91120 -11.70106 -11.09961 -10.73468 -10.69639 -10.45778 -10.22545 -9.08619 -8.76717 -7.78509 -5.13609 0.91396 1.13544 1.22595 1.51384 1.53680 1.58420 1.91529 2.42042 2.56111 2.66121 2.80382 3.33909 3.77477 3.88336 4.00159 4.12089 4.22465 4.37949 4.39199 4.42243 4.49619 4.66969 4.72592 4.85760 4.98034 5.05775 5.32113 5.41119 5.64579 5.70988 5.80830 6.30424 6.39729 6.87119 7.14974 7.42111 7.85540 8.23507 9.22292 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.007464 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.224281 B = 3750.599245 C = 4483.107397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.104 4.104 3 C 0.263 3.737 4 N -0.580 5.580 5 C -0.246 4.246 6 H 0.082 0.918 7 C -0.043 4.043 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.303 1.303 12 H -0.289 1.289 13 C 0.212 3.788 14 C 0.008 3.992 15 C 0.041 3.959 16 Cl -0.019 7.019 17 N -0.549 5.549 18 C 0.390 3.610 19 O -0.302 6.302 20 C 0.050 3.950 21 N -0.436 5.436 22 C 0.077 3.923 23 H 0.200 0.800 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.243 0.757 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.977 9.275 9.687 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.107 4.107 3 C 0.138 3.862 4 N -0.297 5.297 5 C -0.376 4.376 6 H 0.099 0.901 7 C -0.239 4.239 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.230 1.230 12 H -0.216 1.216 13 C 0.084 3.916 14 C -0.110 4.110 15 C -0.112 4.112 16 Cl 0.009 6.991 17 N -0.287 5.287 18 C 0.089 3.911 19 O -0.207 6.207 20 C -0.045 4.045 21 N -0.130 5.130 22 C -0.064 4.064 23 H 0.217 0.783 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.158 0.842 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.470 9.515 9.363 13.576 hybrid contribution -0.146 -0.959 -1.314 1.633 sum -2.617 8.556 8.049 12.035 Atomic orbital electron populations 1.24602 0.95996 1.04966 1.07163 1.24440 0.95632 0.96214 0.94449 1.18062 0.82560 0.93323 0.92221 1.44686 1.73817 1.03486 1.07752 1.19454 1.28713 1.01006 0.88407 0.90064 1.25340 0.97718 1.00320 1.00538 1.70285 1.24799 1.16839 1.43783 0.85651 0.79211 0.76982 0.80479 1.19980 1.23025 1.21587 1.19802 0.88722 0.82972 1.00123 1.22609 0.95703 1.02567 0.90082 1.20092 0.93734 1.05701 0.91640 1.98299 1.67877 1.96601 1.36307 1.69906 1.13272 1.31230 1.14257 1.20253 0.87655 0.95197 0.87954 1.85850 1.24421 1.66607 1.43832 1.23161 0.92489 0.91833 0.96968 1.44884 1.13692 1.37347 1.17066 1.22299 1.05135 0.98978 0.80008 0.78251 0.90711 0.90620 0.94757 0.89276 0.89462 0.92155 0.93472 0.84168 0.87921 0.89150 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.33 18.89 74.32 1.40 -11.92 16 2 C -0.10 -4.62 9.32 31.13 0.29 -4.33 16 3 C 0.26 11.11 5.03 84.57 0.43 11.54 16 4 N -0.58 -25.39 2.47 -716.90 -1.77 -27.16 16 5 C -0.25 -12.35 9.69 84.03 0.81 -11.54 16 6 H 0.08 4.06 7.92 -2.91 -0.02 4.04 16 7 C -0.04 -2.30 4.87 84.86 0.41 -1.88 16 8 N -0.91 -50.78 9.28 21.65 0.20 -50.58 16 9 Si 0.95 44.16 29.62 68.60 2.03 46.19 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 C 0.21 7.63 5.66 85.63 0.48 8.12 16 14 C 0.01 0.31 6.41 40.79 0.26 0.57 16 15 C 0.04 1.70 7.69 83.45 0.64 2.34 16 16 Cl -0.02 -0.75 28.87 -2.72 -0.08 -0.83 16 17 N -0.55 -22.64 10.64 -304.99 -3.25 -25.89 16 18 C 0.39 14.34 8.51 179.85 1.53 15.87 16 19 O -0.30 -9.18 10.49 -88.02 -0.92 -10.11 16 20 C 0.05 1.15 10.67 113.37 1.21 2.36 16 21 N -0.44 -15.11 3.20 -648.62 -2.07 -17.18 16 22 C 0.08 1.98 10.05 127.77 1.28 3.27 16 23 H 0.20 7.65 7.80 -4.41 -0.03 7.62 16 24 H 0.07 3.61 6.34 -2.39 -0.02 3.59 16 25 H 0.08 2.54 7.57 -2.39 -0.02 2.52 16 26 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.09 2.57 7.68 -2.39 -0.02 2.55 16 28 H 0.09 3.08 7.79 -2.39 -0.02 3.06 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.40 5.16 -2.39 -0.01 2.39 16 Total: -1.00 -66.19 311.94 4.01 -62.18 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.11 Total: 8.99 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 8.76 Total: 14.38 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -6.89 Total: -120.81 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.92 Total: -10.11 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -66.19 4.01 -62.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333873983.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.604 kcal (2) G-P(sol) polarization free energy of solvation -66.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds