Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39927 * 125.74616 * 2 1 4 4 C 1.30414 * 108.95681 * 179.76089 * 3 2 1 5 5 C 1.41334 * 108.04720 * 0.41095 * 4 3 2 6 6 C 1.47304 * 126.43389 * 179.85492 * 5 4 3 7 7 O 1.21616 * 120.00230 * 185.02407 * 6 5 4 8 8 N 1.34776 * 119.99840 * 5.01612 * 6 5 4 9 9 C 1.46497 * 120.00039 * 184.82329 * 8 6 5 10 10 C 1.53003 * 109.47331 * 184.73314 * 9 8 6 11 11 C 1.50700 * 115.54931 * 297.96898 * 10 9 8 12 12 H 1.08001 * 119.99389 * 95.23070 * 11 10 9 13 13 C 1.37868 * 120.00242 * 275.22381 * 11 10 9 14 14 N 1.31511 * 120.00207 * 6.32932 * 13 11 10 15 15 Si 1.86806 * 120.00022 * 186.32409 * 13 11 10 16 16 H 1.48499 * 109.47325 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47148 * 300.00625 * 15 13 11 18 18 H 1.48501 * 109.46732 * 60.00490 * 15 13 11 19 19 C 1.52995 * 117.49479 * 83.64390 * 10 9 8 20 20 C 1.52999 * 117.49624 * 152.30069 * 10 9 8 21 21 C 1.34345 * 125.75318 * 180.02562 * 2 1 3 22 22 Cl 1.73605 * 126.31560 * 359.97438 * 21 2 1 23 23 H 1.09005 * 109.46921 * 269.96610 * 1 2 3 24 24 H 1.08999 * 109.47623 * 29.96687 * 1 2 3 25 25 H 1.09003 * 109.47109 * 149.97114 * 1 2 3 26 26 H 1.08005 * 125.97222 * 180.24654 * 4 3 2 27 27 H 0.97004 * 120.00103 * 4.83526 * 8 6 5 28 28 H 1.09002 * 109.46905 * 64.73303 * 9 8 6 29 29 H 1.09000 * 109.47819 * 304.73867 * 9 8 6 30 30 H 0.96999 * 119.99718 * 355.24080 * 14 13 11 31 31 H 1.09002 * 117.49560 * 215.00054 * 19 10 9 32 32 H 1.09001 * 117.50559 * 0.02562 * 19 10 9 33 33 H 1.08999 * 117.50211 * 359.97438 * 20 10 9 34 34 H 1.08998 * 117.49803 * 144.97473 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1357 0.0000 4 6 3.5310 0.7590 0.0051 5 6 3.5621 -0.6540 -0.0009 6 6 4.7661 -1.5026 -0.0011 7 8 4.6591 -2.7101 -0.0990 8 7 5.9865 -0.9408 0.1070 9 6 7.1878 -1.7725 0.0008 10 6 8.4263 -0.9170 0.2747 11 6 8.6582 0.2182 -0.6889 12 1 8.3032 1.2099 -0.4504 13 6 9.3237 -0.0092 -1.8747 14 7 9.6462 -1.2356 -2.2231 15 14 9.7671 1.4249 -2.9867 16 1 10.4725 0.9177 -4.1911 17 1 8.5286 2.1321 -3.4002 18 1 10.6524 2.3647 -2.2531 19 6 8.8230 -0.6959 1.7357 20 6 9.6584 -1.6208 0.8471 21 6 2.2500 -1.0903 -0.0005 22 17 1.7155 -2.7420 -0.0006 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8902 -0.5133 25 1 -0.3633 -0.8897 -0.5143 26 1 4.3909 1.4125 0.0102 27 1 6.0694 0.0142 0.2552 28 1 7.2512 -2.1927 -1.0030 29 1 7.1359 -2.5808 0.7302 30 1 9.4781 -1.9725 -1.6152 31 1 9.2517 0.2708 2.0000 32 1 8.2019 -1.1602 2.5018 33 1 9.5865 -2.6931 1.0288 34 1 10.6368 -1.2629 0.5264 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525052044.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = 34.323935 kcal Electronic energy + Delta-G solvation = -19707.438939 eV Core-core repulsion = 16474.877192 eV Total energy + Delta-G solvation = -3232.561747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.54766 -40.29300 -38.63273 -38.04917 -35.09673 -34.41776 -33.87578 -31.43550 -28.86818 -27.42643 -26.70595 -23.82528 -23.03337 -22.22840 -21.49477 -21.08612 -19.30440 -18.41759 -17.22715 -17.07660 -16.84771 -16.12369 -15.79212 -15.57087 -15.47500 -14.85613 -14.72929 -14.43521 -14.17679 -13.88426 -13.64459 -13.44951 -13.15545 -12.89934 -12.77249 -12.57337 -12.18765 -11.96039 -11.92519 -11.46314 -10.99194 -10.58607 -10.50599 -10.40537 -10.25248 -10.06896 -9.69281 -8.46440 -6.22493 0.10370 0.17178 0.96734 1.47366 1.60677 1.66765 1.84498 2.32211 2.38265 2.64331 3.23757 3.30503 3.39852 3.79903 3.88129 4.10128 4.27382 4.31152 4.40873 4.43905 4.49688 4.57746 4.62422 4.87922 4.90678 5.10530 5.12656 5.38212 5.40897 5.48902 5.61498 6.19695 6.20166 6.32244 6.73592 6.78182 7.34612 7.61128 8.93411 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020855 B = 0.004660 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.305222 B = 6007.739413 C = 6582.491788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.347 5.347 3 N -0.284 5.284 4 C 0.097 3.903 5 C -0.289 4.289 6 C 0.580 3.420 7 O -0.583 6.583 8 N -0.691 5.691 9 C 0.177 3.823 10 C -0.018 4.018 11 C -0.573 4.573 12 H 0.058 0.942 13 C -0.019 4.019 14 N -0.934 5.934 15 Si 1.107 2.893 16 H -0.295 1.295 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.163 4.163 20 C -0.179 4.179 21 C 0.176 3.824 22 Cl 0.032 6.968 23 H 0.104 0.896 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.221 0.779 27 H 0.410 0.590 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.006 4.081 6.105 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.129 5.129 3 N -0.105 5.105 4 C -0.089 4.089 5 C -0.305 4.305 6 C 0.368 3.632 7 O -0.465 6.465 8 N -0.340 5.340 9 C 0.053 3.947 10 C -0.019 4.019 11 C -0.611 4.611 12 H 0.076 0.924 13 C -0.219 4.219 14 N -0.570 5.570 15 Si 0.930 3.070 16 H -0.221 1.221 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.200 4.200 20 C -0.217 4.217 21 C 0.016 3.984 22 Cl 0.060 6.940 23 H 0.123 0.877 24 H 0.135 0.865 25 H 0.125 0.875 26 H 0.237 0.763 27 H 0.246 0.754 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.419 4.477 4.562 19.497 hybrid contribution 0.188 -1.264 1.353 1.861 sum -18.231 3.213 5.915 19.434 Atomic orbital electron populations 1.22551 0.70308 1.06998 1.06185 1.48914 1.08828 1.01309 1.53857 1.77302 1.02024 1.05744 1.25450 1.24411 0.96229 0.92784 0.95462 1.19903 0.91577 0.94720 1.24269 1.17455 0.82899 0.86778 0.76052 1.90734 1.87270 1.15509 1.52986 1.45485 1.04227 1.12526 1.71812 1.20622 0.84080 0.91896 0.98120 1.19344 0.91540 0.97611 0.93418 1.21469 1.40071 0.94463 1.05078 0.92392 1.26949 0.93659 1.02373 0.98919 1.70833 1.47927 1.00173 1.38102 0.83048 0.77102 0.72409 0.74395 1.22132 1.19673 1.19693 1.22900 1.03509 1.00152 0.93466 1.22689 0.96139 0.96713 1.06173 1.22083 0.90826 0.84698 1.00832 1.98442 1.89656 1.09717 1.96204 0.87718 0.86486 0.87517 0.76262 0.75421 0.95681 0.93836 0.92451 0.89422 0.89148 0.90274 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 11.28 127.77 1.44 2.33 16 2 N -0.35 -7.76 3.98 -357.39 -1.42 -9.19 16 3 N -0.28 -7.16 12.49 -56.26 -0.70 -7.86 16 4 C 0.10 2.57 11.50 85.67 0.99 3.55 16 5 C -0.29 -9.13 6.13 -20.12 -0.12 -9.25 16 6 C 0.58 22.54 7.80 86.63 0.68 23.22 16 7 O -0.58 -26.11 15.65 -4.08 -0.06 -26.18 16 8 N -0.69 -26.97 5.44 -466.49 -2.54 -29.50 16 9 C 0.18 8.01 5.46 86.38 0.47 8.48 16 10 C -0.02 -0.84 1.00 -52.93 -0.05 -0.89 16 11 C -0.57 -28.87 8.44 25.60 0.22 -28.66 16 12 H 0.06 2.81 7.82 -2.91 -0.02 2.79 16 13 C -0.02 -0.99 5.39 84.65 0.46 -0.54 16 14 N -0.93 -54.61 13.57 21.44 0.29 -54.31 16 15 Si 1.11 47.82 29.91 68.60 2.05 49.87 16 16 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 19 C -0.16 -6.37 9.95 30.62 0.30 -6.07 16 20 C -0.18 -7.88 8.69 30.62 0.27 -7.61 16 21 C 0.18 4.85 7.53 84.32 0.63 5.49 16 22 Cl 0.03 0.81 27.36 -2.72 -0.07 0.74 16 23 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.11 0.91 7.77 -2.39 -0.02 0.90 16 26 H 0.22 4.61 7.55 -2.91 -0.02 4.59 16 27 H 0.41 14.29 7.24 -92.71 -0.67 13.62 16 28 H 0.02 1.31 7.88 -2.39 -0.02 1.29 16 29 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 30 H 0.26 15.60 6.21 -92.71 -0.58 15.03 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -68.10 314.27 3.47 -64.63 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.66 Total: 21.75 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.28 Total: -9.95 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -4.37 Total: -100.86 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.18 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.87 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -0.07 Total: 0.74 kcal Total: -68.10 3.47 -64.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525052044.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.955 kcal (2) G-P(sol) polarization free energy of solvation -68.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds