Wall clock time and date at job start Tue Mar 31 2020 05:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46906 * 2 1 4 4 C 1.50700 * 109.46905 * 119.99807 * 2 1 3 5 5 C 1.38238 * 119.99828 * 120.00095 * 4 2 1 6 6 C 1.38235 * 120.00086 * 180.02562 * 5 4 2 7 7 C 1.38234 * 119.99883 * 0.02562 * 6 5 4 8 8 S 1.76198 * 119.99837 * 179.97438 * 7 6 5 9 9 O 1.42104 * 106.40044 * 203.54001 * 8 7 6 10 10 O 1.42092 * 106.40596 * 336.46221 * 8 7 6 11 11 N 1.65604 * 107.21740 * 90.00223 * 8 7 6 12 12 C 1.46499 * 120.00006 * 89.99796 * 11 8 7 13 13 C 1.36934 * 119.99869 * 270.00241 * 11 8 7 14 14 H 1.08005 * 119.99986 * 324.21102 * 13 11 8 15 15 C 1.38812 * 120.00248 * 144.21643 * 13 11 8 16 16 N 1.31613 * 120.00576 * 157.89220 * 15 13 11 17 17 Si 1.86807 * 119.99829 * 337.88882 * 15 13 11 18 18 H 1.48502 * 109.46746 * 95.58497 * 17 15 13 19 19 H 1.48497 * 109.47209 * 215.58860 * 17 15 13 20 20 H 1.48501 * 109.47058 * 335.59150 * 17 15 13 21 21 C 1.38241 * 119.99986 * 0.25544 * 7 6 5 22 22 C 1.38234 * 120.00140 * 300.02268 * 4 2 1 23 23 H 1.09002 * 109.46989 * 300.00293 * 1 2 3 24 24 H 1.08996 * 109.46845 * 59.99820 * 1 2 3 25 25 H 1.08996 * 109.46608 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47237 * 240.00241 * 2 1 3 27 27 H 1.09001 * 109.47076 * 59.99778 * 3 2 1 28 28 H 1.08998 * 109.47019 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47033 * 299.99992 * 3 2 1 30 30 H 1.07997 * 119.99732 * 0.02562 * 5 4 2 31 31 H 1.08000 * 119.99942 * 179.97438 * 6 5 4 32 32 H 1.08999 * 109.46998 * 87.54321 * 12 11 8 33 33 H 1.09003 * 109.46896 * 207.54412 * 12 11 8 34 34 H 1.09003 * 109.47490 * 327.54329 * 12 11 8 35 35 H 0.96995 * 120.00574 * 179.97438 * 16 15 13 36 36 H 1.07999 * 119.99691 * 179.72855 * 21 7 6 37 37 H 1.08003 * 120.00034 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8343 1.1037 6 6 3.2874 -2.4863 2.2324 7 6 2.9526 -2.0146 3.4879 8 16 3.5388 -2.8460 4.9265 9 8 2.6381 -2.5168 5.9752 10 8 3.8173 -4.1824 4.5322 11 7 4.9934 -2.1642 5.3282 12 6 5.0383 -1.0171 6.2384 13 6 6.1543 -2.6725 4.8096 14 1 6.2556 -3.7363 4.6530 15 6 7.2011 -1.8205 4.4851 16 7 8.4295 -2.2867 4.4083 17 14 6.8663 -0.0122 4.1572 18 1 7.1012 0.7677 5.3990 19 1 7.7752 0.4736 3.0881 20 1 5.4563 0.1596 3.7242 21 6 2.1530 -0.8941 3.6147 22 6 1.6980 -0.2384 2.4860 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.0883 -2.2030 0.1228 31 1 3.9080 -3.3646 2.1333 32 1 5.0836 -1.3718 7.2680 33 1 5.9214 -0.4159 6.0219 34 1 4.1432 -0.4100 6.1023 35 1 9.1609 -1.6915 4.1812 36 1 1.8878 -0.5282 4.5956 37 1 1.0764 0.6393 2.5851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006616971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:26 Heat of formation + Delta-G solvation = -48.322463 kcal Electronic energy + Delta-G solvation = -20831.895537 eV Core-core repulsion = 17701.334023 eV Total energy + Delta-G solvation = -3130.561514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.23005 -35.98367 -35.84521 -35.30716 -34.55777 -32.13838 -30.65273 -29.61252 -27.26077 -26.56899 -23.94713 -23.45157 -22.36607 -20.03996 -18.47855 -17.53495 -17.05975 -16.37609 -15.75531 -15.42744 -15.05661 -14.34900 -14.10140 -13.71800 -13.61775 -13.38750 -13.06081 -12.85345 -12.82700 -12.73930 -12.49381 -12.25892 -12.05792 -11.29841 -11.26812 -11.05086 -10.98246 -10.94028 -10.86269 -10.69717 -10.56228 -10.38046 -10.18570 -9.81433 -9.16826 -8.66950 -8.60396 -8.20218 -6.74333 -4.18124 1.26850 1.65524 1.72969 2.94762 3.11889 3.16634 3.82311 3.94102 4.24185 4.62865 4.67068 4.74570 4.92853 5.09392 5.14232 5.26565 5.37923 5.48757 5.48982 5.69404 5.70379 5.73541 5.81027 5.86717 5.92474 6.11507 6.12030 6.14874 6.17303 6.37326 6.40080 6.58417 6.69854 6.78714 6.90752 7.30031 7.35685 8.16221 8.78768 8.86148 10.32074 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.007069 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.346245 B = 3959.729005 C = 4694.851030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.049 4.049 5 C -0.145 4.145 6 C -0.018 4.018 7 C -0.662 4.662 8 S 2.552 3.448 9 O -1.001 7.001 10 O -0.973 6.973 11 N -0.832 5.832 12 C 0.091 3.909 13 C -0.257 4.257 14 H 0.125 0.875 15 C 0.065 3.935 16 N -0.825 5.825 17 Si 0.880 3.120 18 H -0.269 1.269 19 H -0.286 1.286 20 H -0.255 1.255 21 C -0.033 4.033 22 C -0.144 4.144 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.122 0.878 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.282 0.718 36 H 0.129 0.871 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 7.829 -6.813 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.049 4.049 5 C -0.164 4.164 6 C -0.037 4.037 7 C -0.741 4.741 8 S 2.652 3.348 9 O -0.991 6.991 10 O -0.963 6.963 11 N -0.658 5.658 12 C -0.055 4.055 13 C -0.404 4.404 14 H 0.143 0.857 15 C -0.151 4.151 16 N -0.462 5.462 17 Si 0.706 3.294 18 H -0.195 1.195 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.052 4.052 22 C -0.163 4.163 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.147 0.853 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.631 7.186 -6.428 13.628 hybrid contribution -0.011 1.529 -0.981 1.817 sum -9.642 8.715 -7.409 14.961 Atomic orbital electron populations 1.21848 0.94308 1.02058 1.01798 1.20187 0.95977 0.96142 0.95546 1.21855 1.01477 0.95025 1.01779 1.19977 0.95678 0.94746 0.94511 1.21152 0.99915 0.96539 0.98746 1.20943 0.94301 0.97463 0.90964 1.32239 1.10032 1.10951 1.20839 1.10207 0.73874 0.76890 0.73825 1.93355 1.65481 1.85262 1.54955 1.93385 1.84264 1.35280 1.83335 1.53871 1.19092 1.44208 1.48615 1.21570 1.00943 0.88932 0.94023 1.19393 0.86948 0.95134 1.38887 0.85747 1.25792 0.95064 0.99871 0.94330 1.69823 0.99079 1.37651 1.39601 0.86891 0.80103 0.84141 0.78234 1.19549 1.21232 1.17893 1.20847 0.92950 0.92615 0.98817 1.20975 1.02346 1.00676 0.92272 0.92388 0.92473 0.92492 0.90407 0.92395 0.92404 0.92444 0.86032 0.84498 0.91903 0.92492 0.92529 0.90763 0.85292 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.01 37.16 0.33 -1.09 16 2 C -0.06 -0.69 3.09 -91.77 -0.28 -0.98 16 3 C -0.14 -1.52 9.01 37.16 0.33 -1.18 16 4 C -0.05 -0.74 4.78 -104.62 -0.50 -1.24 16 5 C -0.14 -2.39 9.67 -39.58 -0.38 -2.77 16 6 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 7 C -0.66 -13.69 5.97 -39.58 -0.24 -13.93 16 8 S 2.55 58.96 5.61 -107.50 -0.60 58.35 16 9 O -1.00 -23.82 16.40 -57.17 -0.94 -24.76 16 10 O -0.97 -24.92 16.20 -57.17 -0.93 -25.85 16 11 N -0.83 -19.39 2.90 -66.69 -0.19 -19.58 16 12 C 0.09 1.84 8.98 59.85 0.54 2.38 16 13 C -0.26 -6.55 9.60 -15.06 -0.14 -6.69 16 14 H 0.13 3.44 7.58 -52.48 -0.40 3.04 16 15 C 0.06 1.62 5.31 -17.43 -0.09 1.53 16 16 N -0.83 -21.44 13.97 55.49 0.78 -20.66 16 17 Si 0.88 19.10 24.93 -169.99 -4.24 14.86 16 18 H -0.27 -5.49 6.68 56.52 0.38 -5.12 16 19 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.03 -0.61 9.52 -39.58 -0.38 -0.99 16 22 C -0.14 -2.28 8.71 -39.58 -0.34 -2.63 16 23 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.83 7.88 -51.93 -0.41 0.42 16 27 H 0.06 0.60 7.39 -51.93 -0.38 0.22 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.12 1.66 7.95 -52.49 -0.42 1.25 16 31 H 0.14 2.65 7.62 -52.49 -0.40 2.25 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.15 3.13 -51.93 -0.16 0.98 16 34 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 35 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.13 2.22 7.61 -52.49 -0.40 1.82 16 37 H 0.12 1.55 7.10 -52.48 -0.37 1.17 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -29.74 314.62 -7.92 -37.66 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -5.01 Total: 3.55 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -1.53 Total: -28.32 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.58 Total: -40.25 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -1.86 Total: -50.61 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.24 Total: 14.86 kcal Atomic # 16 Polarization: 58.96 SS G_CDS: -0.60 Total: 58.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.74 -7.92 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006616971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.662 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds