Wall clock time and date at job start Tue Mar 31 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38261 * 120.00163 * 2 1 4 4 C 1.38210 * 120.00205 * 180.25519 * 3 2 1 5 5 C 1.38257 * 119.99919 * 359.53926 * 4 3 2 6 6 C 1.50701 * 120.00014 * 180.23338 * 5 4 3 7 7 C 1.38211 * 119.99980 * 0.39579 * 5 4 3 8 8 S 1.76205 * 120.00152 * 179.83258 * 7 5 4 9 9 O 1.42105 * 106.39995 * 48.92349 * 8 7 5 10 10 O 1.42094 * 106.40223 * 181.84181 * 8 7 5 11 11 N 1.65600 * 107.21828 * 295.38305 * 8 7 5 12 12 C 1.46498 * 120.00023 * 278.68862 * 11 8 7 13 13 C 1.46507 * 119.99882 * 98.68653 * 11 8 7 14 14 C 1.50700 * 109.47073 * 98.69726 * 13 11 8 15 15 H 1.08004 * 119.99583 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00179 * 180.02562 * 14 13 11 17 17 N 1.31511 * 119.99685 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00146 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47411 * 59.99640 * 18 16 14 20 20 H 1.48496 * 109.47145 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46814 * 300.00030 * 18 16 14 22 22 C 1.38214 * 120.00424 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47041 * 89.99909 * 1 2 3 24 24 H 1.09000 * 109.46956 * 209.99594 * 1 2 3 25 25 H 1.09003 * 109.47006 * 329.99584 * 1 2 3 26 26 H 1.07996 * 119.99659 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.00344 * 179.72733 * 4 3 2 28 28 H 1.09006 * 109.47055 * 264.14141 * 6 5 4 29 29 H 1.08997 * 109.47471 * 24.14332 * 6 5 4 30 30 H 1.09001 * 109.47052 * 144.13917 * 6 5 4 31 31 H 1.08997 * 109.47042 * 89.99815 * 12 11 8 32 32 H 1.08999 * 109.46841 * 209.99955 * 12 11 8 33 33 H 1.08996 * 109.46644 * 329.99761 * 12 11 8 34 34 H 1.08990 * 109.46984 * 218.69635 * 13 11 8 35 35 H 1.09002 * 109.47227 * 338.70031 * 13 11 8 36 36 H 0.97003 * 119.99761 * 180.02562 * 17 16 14 37 37 H 1.08007 * 119.99468 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0053 5 6 4.2717 0.0000 -0.0010 6 6 5.7787 0.0001 -0.0015 7 6 3.5807 -1.1969 0.0003 8 16 4.4617 -2.7229 0.0013 9 8 5.4384 -2.6216 1.0285 10 8 3.4824 -3.7516 -0.0412 11 7 5.2934 -2.8097 -1.4280 12 6 4.6093 -3.2444 -2.6483 13 6 6.7134 -2.4516 -1.4721 14 6 7.5492 -3.7043 -1.4162 15 1 7.0706 -4.6705 -1.3536 16 6 8.9250 -3.6170 -1.4439 17 7 9.5077 -2.4405 -1.5196 18 14 9.9610 -5.1698 -1.3753 19 1 9.6331 -6.0354 -2.5365 20 1 11.4003 -4.8069 -1.4199 21 1 9.6733 -5.9015 -0.1155 22 6 2.1981 -1.1969 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 -0.0098 28 1 6.1417 -0.1087 -1.0236 29 1 6.1422 0.9394 0.4151 30 1 6.1422 -0.8305 0.6035 31 1 4.1875 -2.3775 -3.1569 32 1 5.3218 -3.7410 -3.3070 33 1 3.8097 -3.9382 -2.3890 34 1 6.9242 -1.9152 -2.3972 35 1 6.9544 -1.8157 -0.6203 36 1 10.4756 -2.3790 -1.5395 37 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032107635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:28 Heat of formation + Delta-G solvation = -49.438619 kcal Electronic energy + Delta-G solvation = -20926.383456 eV Core-core repulsion = 17795.773542 eV Total energy + Delta-G solvation = -3130.609915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42728 -36.77910 -35.62071 -35.18065 -33.78423 -32.44044 -31.15181 -29.28344 -27.73628 -25.11491 -24.86677 -23.19459 -22.21808 -21.21589 -18.18054 -17.03991 -16.79127 -16.32021 -15.83446 -15.51868 -15.04779 -14.45096 -14.20387 -14.03626 -13.51430 -13.32881 -13.06355 -12.86942 -12.65322 -12.31237 -12.21426 -12.09810 -12.03225 -11.58408 -11.48776 -11.22060 -11.14246 -11.03747 -11.01407 -10.69455 -10.40972 -10.18820 -10.02731 -9.65907 -9.23172 -8.48420 -8.43148 -8.04715 -6.07379 -4.11320 0.85518 1.12245 1.35282 3.33756 3.37416 3.40893 3.43987 3.78537 4.33089 4.44503 4.66332 4.77181 4.93321 5.07270 5.17478 5.23265 5.27673 5.46721 5.53339 5.64037 5.66898 5.75691 5.92754 6.01548 6.02623 6.05153 6.18659 6.29439 6.42125 6.45622 6.58327 6.64098 6.96203 7.21527 7.40515 7.57829 7.89901 8.19979 8.90890 9.53723 11.01017 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.005454 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.676101 B = 5133.026707 C = 5564.683629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.124 4.124 3 C -0.069 4.069 4 C -0.144 4.144 5 C 0.026 3.974 6 C -0.181 4.181 7 C -0.676 4.676 8 S 2.689 3.311 9 O -0.945 6.945 10 O -0.978 6.978 11 N -0.985 5.985 12 C 0.094 3.906 13 C 0.240 3.760 14 C -0.533 4.533 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.022 4.022 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.264 0.736 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.225 7.572 0.256 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.125 4.125 3 C -0.087 4.087 4 C -0.163 4.163 5 C 0.024 3.976 6 C -0.237 4.237 7 C -0.760 4.760 8 S 2.777 3.223 9 O -0.935 6.935 10 O -0.968 6.968 11 N -0.825 5.825 12 C -0.052 4.052 13 C 0.119 3.881 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.042 4.042 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.049 7.072 0.889 15.753 hybrid contribution 0.396 0.044 -0.341 0.525 sum -13.652 7.116 0.548 15.405 Atomic orbital electron populations 1.20762 0.90834 1.02811 1.02365 1.19961 0.96249 0.93212 1.03088 1.21237 0.94285 0.97487 0.95740 1.21177 0.94215 0.97798 1.03097 1.19691 0.96388 0.91646 0.89829 1.21992 0.89665 1.06466 1.05528 1.31284 1.06118 1.21174 1.17436 1.02112 0.72794 0.73527 0.73828 1.93540 1.58653 1.86318 1.54962 1.93473 1.62353 1.53996 1.86957 1.57239 1.20962 1.80947 1.23378 1.21381 0.97444 0.98731 0.87662 1.19508 0.72502 0.96954 0.99169 1.21478 0.91192 0.93345 1.51259 0.92107 1.24911 0.97720 0.96372 0.94859 1.69898 1.10311 1.23004 1.50117 0.86582 0.78958 0.83228 0.78848 1.20185 1.21167 1.19982 1.20823 0.92005 0.98629 0.92698 0.91185 0.91353 0.91623 0.85752 0.85329 0.88462 0.90414 0.86598 0.94218 0.89955 0.91584 0.94729 0.92267 0.92599 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.12 -1.57 5.88 -104.62 -0.62 -2.19 16 3 C -0.07 -0.83 9.70 -39.58 -0.38 -1.21 16 4 C -0.14 -1.94 9.68 -39.58 -0.38 -2.32 16 5 C 0.03 0.42 5.87 -104.62 -0.61 -0.20 16 6 C -0.18 -3.08 7.90 36.01 0.28 -2.80 16 7 C -0.68 -11.68 5.91 -39.59 -0.23 -11.91 16 8 S 2.69 54.89 5.06 -107.50 -0.54 54.34 16 9 O -0.94 -22.16 14.35 -57.17 -0.82 -22.98 16 10 O -0.98 -20.63 15.77 -57.17 -0.90 -21.54 16 11 N -0.98 -20.44 3.12 -123.06 -0.38 -20.82 16 12 C 0.09 1.63 10.69 59.85 0.64 2.27 16 13 C 0.24 5.83 3.72 -5.19 -0.02 5.81 16 14 C -0.53 -14.64 9.35 -34.44 -0.32 -14.96 16 15 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.02 -0.34 9.20 -39.58 -0.36 -0.70 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.10 1.69 6.59 -51.93 -0.34 1.35 16 29 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 30 H 0.12 2.32 4.00 -51.93 -0.21 2.11 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.07 1.06 7.12 -51.93 -0.37 0.69 16 34 H 0.03 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.06 1.48 4.25 -51.93 -0.22 1.26 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.14 1.96 7.34 -52.48 -0.39 1.57 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -32.09 314.07 -8.81 -40.90 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.86 Total: 0.77 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -1.75 Total: -27.19 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.35 Total: -45.46 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -1.72 Total: -44.52 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.54 Total: 54.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.09 -8.81 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032107635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.540 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds