Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38261 * 120.00163 * 2 1 4 4 C 1.38210 * 120.00205 * 180.25519 * 3 2 1 5 5 C 1.38257 * 119.99919 * 359.53926 * 4 3 2 6 6 C 1.50701 * 120.00014 * 180.23338 * 5 4 3 7 7 C 1.38211 * 119.99980 * 0.39579 * 5 4 3 8 8 S 1.76205 * 120.00152 * 179.83258 * 7 5 4 9 9 O 1.42105 * 106.39995 * 48.92349 * 8 7 5 10 10 O 1.42094 * 106.40223 * 181.84181 * 8 7 5 11 11 N 1.65600 * 107.21828 * 295.38305 * 8 7 5 12 12 C 1.46498 * 120.00023 * 278.68862 * 11 8 7 13 13 C 1.46507 * 119.99882 * 98.68653 * 11 8 7 14 14 C 1.50700 * 109.47073 * 98.69726 * 13 11 8 15 15 H 1.08004 * 119.99583 * 359.97438 * 14 13 11 16 16 C 1.37878 * 120.00179 * 180.02562 * 14 13 11 17 17 N 1.31511 * 119.99685 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00146 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47411 * 59.99640 * 18 16 14 20 20 H 1.48496 * 109.47145 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46814 * 300.00030 * 18 16 14 22 22 C 1.38214 * 120.00424 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47041 * 89.99909 * 1 2 3 24 24 H 1.09000 * 109.46956 * 209.99594 * 1 2 3 25 25 H 1.09003 * 109.47006 * 329.99584 * 1 2 3 26 26 H 1.07996 * 119.99659 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.00344 * 179.72733 * 4 3 2 28 28 H 1.09006 * 109.47055 * 264.14141 * 6 5 4 29 29 H 1.08997 * 109.47471 * 24.14332 * 6 5 4 30 30 H 1.09001 * 109.47052 * 144.13917 * 6 5 4 31 31 H 1.08997 * 109.47042 * 89.99815 * 12 11 8 32 32 H 1.08999 * 109.46841 * 209.99955 * 12 11 8 33 33 H 1.08996 * 109.46644 * 329.99761 * 12 11 8 34 34 H 1.08990 * 109.46984 * 218.69635 * 13 11 8 35 35 H 1.09002 * 109.47227 * 338.70031 * 13 11 8 36 36 H 0.97003 * 119.99761 * 180.02562 * 17 16 14 37 37 H 1.08007 * 119.99468 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0053 5 6 4.2717 0.0000 -0.0010 6 6 5.7787 0.0001 -0.0015 7 6 3.5807 -1.1969 0.0003 8 16 4.4617 -2.7229 0.0013 9 8 5.4384 -2.6216 1.0285 10 8 3.4824 -3.7516 -0.0412 11 7 5.2934 -2.8097 -1.4280 12 6 4.6093 -3.2444 -2.6483 13 6 6.7134 -2.4516 -1.4721 14 6 7.5492 -3.7043 -1.4162 15 1 7.0706 -4.6705 -1.3536 16 6 8.9250 -3.6170 -1.4439 17 7 9.5077 -2.4405 -1.5196 18 14 9.9610 -5.1698 -1.3753 19 1 9.6331 -6.0354 -2.5365 20 1 11.4003 -4.8069 -1.4199 21 1 9.6733 -5.9015 -0.1155 22 6 2.1981 -1.1969 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6583 2.1326 -0.0004 27 1 4.1204 2.1326 -0.0098 28 1 6.1417 -0.1087 -1.0236 29 1 6.1422 0.9394 0.4151 30 1 6.1422 -0.8305 0.6035 31 1 4.1875 -2.3775 -3.1569 32 1 5.3218 -3.7410 -3.3070 33 1 3.8097 -3.9382 -2.3890 34 1 6.9242 -1.9152 -2.3972 35 1 6.9544 -1.8157 -0.6203 36 1 10.4756 -2.3790 -1.5395 37 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032107635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = -70.404591 kcal Electronic energy + Delta-G solvation = -20927.292609 eV Core-core repulsion = 17795.773542 eV Total energy + Delta-G solvation = -3131.519067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51709 -38.43966 -37.31926 -36.87403 -34.88340 -34.47389 -32.26272 -30.38294 -29.52784 -26.82876 -25.94354 -24.37598 -24.04813 -22.35395 -19.75641 -18.66694 -18.55287 -17.92253 -17.33540 -16.66117 -16.57867 -16.18126 -15.31907 -15.22895 -15.14182 -14.80166 -14.19832 -14.16256 -14.02227 -13.80170 -13.72873 -13.31976 -13.21894 -13.04347 -13.03178 -12.93303 -12.76535 -12.53502 -12.44877 -12.21789 -12.14065 -11.95191 -11.74827 -11.38106 -10.54759 -10.33466 -9.77394 -9.55065 -8.18089 -6.29436 -0.56954 -0.16881 0.27338 1.40907 1.43854 1.51005 2.05535 2.42520 2.51010 2.81395 3.13047 3.37337 3.71525 3.81694 3.94793 4.11979 4.19781 4.28345 4.48068 4.60715 4.65168 4.69552 4.77907 4.81828 4.85818 4.92441 5.06003 5.11287 5.16209 5.24697 5.30938 5.38481 5.45541 5.50351 5.73248 5.90693 5.91795 6.14096 6.78025 7.38598 8.89029 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.005454 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.676101 B = 5133.026707 C = 5564.683629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C -0.058 4.058 4 C -0.141 4.141 5 C 0.003 3.997 6 C -0.179 4.179 7 C -0.683 4.683 8 S 2.691 3.309 9 O -0.987 6.987 10 O -0.994 6.994 11 N -0.993 5.993 12 C 0.087 3.913 13 C 0.253 3.747 14 C -0.556 4.556 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.920 5.920 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.278 1.278 22 C -0.040 4.040 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.169 0.831 27 H 0.158 0.842 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.049 0.951 36 H 0.268 0.732 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.293 9.302 -0.118 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.119 4.119 3 C -0.076 4.076 4 C -0.160 4.160 5 C 0.002 3.998 6 C -0.235 4.235 7 C -0.773 4.773 8 S 2.785 3.215 9 O -0.978 6.978 10 O -0.984 6.984 11 N -0.832 5.832 12 C -0.058 4.058 13 C 0.130 3.870 14 C -0.595 4.595 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.203 1.203 22 C -0.060 4.060 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.186 0.814 27 H 0.175 0.825 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.104 8.740 0.497 18.329 hybrid contribution 0.888 -0.383 -0.211 0.990 sum -15.216 8.357 0.285 17.362 Atomic orbital electron populations 1.20874 0.87955 1.04240 1.03730 1.20421 0.98294 0.92344 1.00815 1.21770 0.93752 0.99000 0.93046 1.21528 0.95235 0.97531 1.01675 1.19725 0.95736 0.92646 0.91743 1.21856 0.91001 1.06295 1.04338 1.30595 1.06838 1.19128 1.20732 1.01565 0.72384 0.74441 0.73071 1.93488 1.60384 1.87344 1.56539 1.93435 1.62231 1.55771 1.87004 1.57111 1.19954 1.81659 1.24518 1.21590 0.97344 1.00227 0.86614 1.19132 0.74158 0.95495 0.98180 1.21843 0.92181 0.94106 1.51410 0.93038 1.25680 0.98846 0.99316 0.94527 1.69985 1.10676 1.24617 1.50635 0.85680 0.77776 0.79838 0.78859 1.19004 1.20085 1.20329 1.21025 0.91110 1.00239 0.93593 0.89696 0.91054 0.89204 0.81371 0.82485 0.89623 0.87969 0.90022 0.91330 0.90530 0.90582 0.95515 0.93291 0.92339 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 2 C -0.12 -2.56 5.88 -19.87 -0.12 -2.67 16 3 C -0.06 -1.12 9.70 22.27 0.22 -0.90 16 4 C -0.14 -3.34 9.68 22.27 0.22 -3.12 16 5 C 0.00 0.09 5.87 -19.87 -0.12 -0.02 16 6 C -0.18 -6.25 7.90 71.24 0.56 -5.69 16 7 C -0.68 -23.56 5.91 22.27 0.13 -23.43 16 8 S 2.69 114.22 5.06 -56.49 -0.29 113.94 16 9 O -0.99 -49.15 14.35 -128.00 -1.84 -50.98 16 10 O -0.99 -43.20 15.77 -128.00 -2.02 -45.22 16 11 N -0.99 -42.69 3.12 -543.23 -1.69 -44.39 16 12 C 0.09 3.06 10.69 127.77 1.37 4.42 16 13 C 0.25 12.84 3.72 85.63 0.32 13.16 16 14 C -0.56 -31.58 9.35 25.60 0.24 -31.34 16 15 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 16 C 0.02 0.92 5.46 84.66 0.46 1.38 16 17 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 18 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 C -0.04 -1.16 9.20 22.27 0.20 -0.96 16 23 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 26 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.09 3.11 6.59 -2.38 -0.02 3.09 16 29 H 0.10 2.90 8.05 -2.39 -0.02 2.88 16 30 H 0.08 3.47 4.00 -2.39 -0.01 3.46 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 33 H 0.08 2.47 7.12 -2.39 -0.02 2.45 16 34 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 35 H 0.05 2.60 4.25 -2.39 -0.01 2.59 16 36 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.14 3.88 7.34 -2.91 -0.02 3.85 16 Total: -1.00 -71.55 314.07 1.74 -69.80 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.07 Total: 13.30 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 4.20 Total: -50.00 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -1.41 Total: -97.38 kcal Atomic # 8 Polarization: -92.34 SS G_CDS: -3.86 Total: -96.20 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 114.22 SS G_CDS: -0.29 Total: 113.94 kcal Total: -71.55 1.74 -69.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032107635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.601 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds