Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.50703 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00257 * 89.99840 * 4 3 2 6 6 C 1.38230 * 119.99864 * 179.97438 * 5 4 3 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 C 1.50704 * 109.46838 * 165.00218 * 12 11 8 14 14 H 1.07999 * 119.99673 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99993 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46923 * 90.00470 * 17 15 13 19 19 H 1.48500 * 109.47190 * 210.00101 * 17 15 13 20 20 H 1.48497 * 109.47213 * 330.00070 * 17 15 13 21 21 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 22 22 C 1.38234 * 119.99499 * 270.02358 * 4 3 2 23 23 H 1.09004 * 109.47526 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47154 * 299.99879 * 1 2 3 25 25 H 1.09004 * 109.47657 * 60.00038 * 1 2 3 26 26 H 1.09001 * 109.47154 * 240.00121 * 2 1 3 27 27 H 1.08996 * 109.47043 * 120.00062 * 2 1 3 28 28 H 1.09001 * 109.47096 * 60.00086 * 3 2 1 29 29 H 1.09005 * 109.47051 * 299.99883 * 3 2 1 30 30 H 1.08002 * 119.99744 * 359.97438 * 5 4 3 31 31 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 33 33 H 1.09000 * 109.47104 * 284.99861 * 12 11 8 34 34 H 1.08996 * 109.47400 * 45.00315 * 12 11 8 35 35 H 0.97003 * 119.99749 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.00299 * 179.97438 * 21 7 6 37 37 H 1.07997 * 120.00459 * 359.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2377 1.4427 -1.1980 6 6 5.6200 1.4433 -1.1985 7 6 6.3117 1.4432 -0.0017 8 16 8.0736 1.4360 -0.0023 9 8 8.4732 0.8927 1.2485 10 8 8.4722 0.8872 -1.2509 11 7 8.5703 3.0158 -0.0060 12 6 8.2789 3.8779 1.1420 13 6 9.1298 5.1195 1.0667 14 1 9.8190 5.2527 0.2459 15 6 9.0284 6.0852 2.0455 16 7 8.1895 5.9226 3.0452 17 14 10.0836 7.6238 1.9524 18 1 9.3614 8.6739 1.1903 19 1 10.3658 8.1143 3.3254 20 1 11.3625 7.3063 1.2677 21 6 5.6209 1.4430 1.1957 22 6 4.2385 1.4419 1.1963 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6973 1.4424 -2.1331 31 1 6.1597 1.4430 -2.1340 32 1 9.0541 3.3703 -0.7684 33 1 7.2255 4.1580 1.1280 34 1 8.4999 3.3415 2.0647 35 1 8.1179 6.6023 3.7336 36 1 6.1613 1.4425 2.1309 37 1 3.6989 1.4418 2.1318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033889328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = -74.488815 kcal Electronic energy + Delta-G solvation = -19763.981717 eV Core-core repulsion = 16632.285544 eV Total energy + Delta-G solvation = -3131.696173 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.36049 -36.68644 -35.38275 -35.24963 -34.60828 -32.15200 -31.30630 -30.92921 -26.78605 -26.73606 -22.82441 -22.59890 -22.43694 -21.06062 -19.02916 -17.69446 -17.23082 -16.00672 -15.89112 -15.52842 -15.25142 -14.71175 -14.40826 -14.31795 -13.84322 -13.52648 -13.38798 -13.08741 -12.72131 -12.37764 -12.28682 -12.10990 -11.80723 -11.58184 -11.49863 -11.46636 -11.41700 -11.18734 -10.95565 -10.82946 -10.74945 -10.40379 -10.12225 -9.43672 -9.03761 -8.90638 -8.87355 -8.22818 -6.18486 -4.22955 0.85031 1.12016 1.44108 3.24873 3.31427 3.34684 3.47598 3.83164 4.30007 4.34523 4.53725 4.62880 4.78408 4.84136 5.01519 5.04757 5.18596 5.20144 5.33148 5.42465 5.50903 5.58064 5.65115 5.73598 5.87878 5.89102 6.04528 6.07361 6.26257 6.29028 6.44936 6.52460 6.96747 7.28149 7.34030 7.79368 7.80881 8.17428 8.81200 9.41964 10.91922 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.004434 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.120821 B = 6312.912331 C = 7275.962301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.035 4.035 5 C -0.145 4.145 6 C -0.018 4.018 7 C -0.672 4.672 8 S 2.691 3.309 9 O -0.963 6.963 10 O -0.981 6.981 11 N -1.103 6.103 12 C 0.246 3.754 13 C -0.529 4.529 14 H 0.066 0.934 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.904 3.096 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.009 4.009 22 C -0.140 4.140 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.410 0.590 33 H 0.022 0.978 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.142 0.858 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.925 -8.883 -6.267 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.124 4.124 4 C -0.036 4.036 5 C -0.164 4.164 6 C -0.037 4.037 7 C -0.758 4.758 8 S 2.779 3.221 9 O -0.953 6.953 10 O -0.972 6.972 11 N -0.865 5.865 12 C 0.123 3.877 13 C -0.569 4.569 14 H 0.084 0.916 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.028 4.028 22 C -0.159 4.159 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.245 0.755 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.586 -9.609 -5.913 16.903 hybrid contribution -0.056 1.464 -0.240 1.484 sum -12.642 -8.145 -6.153 16.249 Atomic orbital electron populations 1.21786 0.95553 1.01714 1.01914 1.21508 0.95747 0.95817 1.02625 1.20756 0.90595 0.97685 1.03409 1.20159 0.95744 0.94232 0.93418 1.21077 0.94149 1.03454 0.97688 1.20871 0.94545 0.91671 0.96619 1.31157 1.28121 1.17236 0.99265 1.01812 0.73661 0.73356 0.73275 1.93560 1.80347 1.77387 1.44051 1.93518 1.81709 1.77665 1.44278 1.55438 1.70774 1.30367 1.29958 1.19087 0.96600 0.89664 0.82375 1.21200 1.23140 1.02869 1.09691 0.91595 1.24972 0.95609 0.98639 0.94986 1.69938 1.35958 1.35078 1.11872 0.86410 0.80560 0.82498 0.77440 1.20529 1.21017 1.19681 1.21012 0.94634 0.90171 0.97006 1.21144 0.94213 1.02710 0.97820 0.92653 0.92599 0.92686 0.91745 0.91646 0.90504 0.90651 0.85536 0.84500 0.75530 0.96042 0.94333 0.92472 0.84007 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 3 C -0.09 -0.81 5.34 -27.88 -0.15 -0.96 16 4 C -0.04 -0.44 5.13 -104.62 -0.54 -0.98 16 5 C -0.14 -1.86 9.70 -39.59 -0.38 -2.25 16 6 C -0.02 -0.27 9.52 -39.59 -0.38 -0.64 16 7 C -0.67 -11.42 5.95 -39.58 -0.24 -11.66 16 8 S 2.69 51.08 5.74 -107.50 -0.62 50.46 16 9 O -0.96 -20.99 16.75 -57.17 -0.96 -21.95 16 10 O -0.98 -19.27 17.28 -57.17 -0.99 -20.26 16 11 N -1.10 -22.52 5.99 -11.66 -0.07 -22.59 16 12 C 0.25 6.08 5.98 -5.19 -0.03 6.05 16 13 C -0.53 -14.18 9.27 -34.44 -0.32 -14.50 16 14 H 0.07 1.69 7.65 -52.49 -0.40 1.29 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 17 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.01 -0.15 9.52 -39.58 -0.38 -0.53 16 22 C -0.14 -1.94 9.70 -39.58 -0.38 -2.33 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.14 1.83 7.62 -52.49 -0.40 1.43 16 32 H 0.41 7.62 8.54 -34.47 -0.29 7.33 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 1.03 7.75 -51.93 -0.40 0.63 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.14 2.33 7.62 -52.49 -0.40 1.93 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -32.18 329.94 -9.88 -42.06 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.25 Total: 4.15 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -2.68 Total: -28.04 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.67 Total: -47.15 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: -1.95 Total: -42.21 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.62 Total: 50.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.18 -9.88 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033889328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.426 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds