Wall clock time and date at job start Tue Mar 31 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 S 1.76195 * 120.00186 * 179.72636 * 5 4 3 7 7 O 1.42101 * 106.40134 * 203.53747 * 6 5 4 8 8 O 1.42104 * 106.40234 * 336.45145 * 6 5 4 9 9 N 1.65591 * 107.22084 * 89.99343 * 6 5 4 10 10 C 1.46500 * 120.00361 * 65.00206 * 9 6 5 11 11 C 1.52992 * 109.47450 * 164.99834 * 10 9 6 12 12 C 1.53005 * 109.47247 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47525 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99897 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00172 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99886 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99779 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47081 * 89.99724 * 17 15 13 19 19 H 1.48503 * 109.46844 * 209.99324 * 17 15 13 20 20 H 1.48494 * 109.47167 * 329.99541 * 17 15 13 21 21 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 22 22 C 1.38234 * 120.00033 * 0.49775 * 21 5 4 23 23 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 24 24 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 25 25 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 26 26 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 28 28 H 0.96998 * 120.00198 * 244.99515 * 9 6 5 29 29 H 1.09004 * 109.47165 * 285.00395 * 10 9 6 30 30 H 1.09006 * 109.47068 * 44.99535 * 10 9 6 31 31 H 1.08999 * 109.47299 * 299.99943 * 11 10 9 32 32 H 1.09000 * 109.47160 * 60.00228 * 11 10 9 33 33 H 1.08999 * 109.46766 * 300.00075 * 12 11 10 34 34 H 1.09000 * 109.47013 * 59.99944 * 12 11 10 35 35 H 0.97001 * 119.99546 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.99934 * 180.25938 * 21 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 16 6.0337 0.0000 -0.0110 7 8 6.4329 -1.2487 -0.5594 8 8 6.4329 1.2507 -0.5547 9 7 6.5299 -0.0030 1.5688 10 6 6.2378 -1.1544 2.4262 11 6 7.1014 -1.0835 3.6871 12 6 6.7969 -2.2864 4.5822 13 6 7.6470 -2.2162 5.8245 14 1 8.3360 -1.3959 5.9617 15 6 7.5460 -3.1998 6.7855 16 7 6.7074 -4.1989 6.6182 17 14 8.6004 -3.1131 8.3251 18 1 7.8771 -2.3565 9.3784 19 1 8.8834 -4.4882 8.8092 20 1 9.8788 -2.4258 8.0114 21 6 3.5805 -1.1972 0.0010 22 6 2.1982 -1.1972 0.0009 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6582 2.1324 -0.0004 27 1 4.1205 2.1325 0.0001 28 1 7.0139 0.7576 1.9266 29 1 5.1844 -1.1412 2.7060 30 1 6.4586 -2.0751 1.8859 31 1 8.1548 -1.0968 3.4073 32 1 6.8806 -0.1630 4.2274 33 1 5.7435 -2.2735 4.8621 34 1 7.0180 -3.2067 4.0417 35 1 6.6361 -4.8907 7.2944 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034625231.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:53 Heat of formation + Delta-G solvation = -72.613347 kcal Electronic energy + Delta-G solvation = -19531.530699 eV Core-core repulsion = 16399.915852 eV Total energy + Delta-G solvation = -3131.614846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51469 -37.20000 -35.97629 -35.78868 -33.29203 -33.20826 -31.25483 -30.86258 -27.54136 -26.39354 -23.16943 -22.91577 -22.12085 -20.58727 -19.36126 -18.04996 -17.19878 -16.54867 -16.04177 -15.62440 -15.33507 -14.76837 -14.50716 -14.46230 -14.24681 -14.13525 -13.75447 -12.63311 -12.61334 -12.53018 -12.35070 -12.30106 -12.15034 -12.01489 -11.92484 -11.54341 -11.37476 -10.95846 -10.84120 -10.75594 -10.55100 -9.93447 -9.47793 -9.33828 -9.25631 -9.22439 -9.09655 -8.38095 -6.03261 -4.05770 0.39318 0.68403 1.10962 3.01368 3.30433 3.35043 3.37041 3.40478 3.81200 4.29730 4.43767 4.49262 4.57878 4.70098 5.02222 5.09249 5.21363 5.32948 5.35139 5.36705 5.39365 5.65650 5.66771 5.74063 5.87559 5.94314 5.96053 6.08787 6.21022 6.56450 6.64130 6.75916 6.95168 7.15707 7.61837 7.74582 7.95663 8.37567 9.00779 9.58557 11.08068 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.003757 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.919314 B = 7451.097902 C = 8349.492562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.146 4.146 4 C -0.016 4.016 5 C -0.680 4.680 6 S 2.695 3.305 7 O -0.958 6.958 8 O -0.968 6.968 9 N -1.113 6.113 10 C 0.113 3.887 11 C -0.116 4.116 12 C 0.021 3.979 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.014 4.014 22 C -0.142 4.142 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.139 0.861 28 H 0.417 0.583 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.143 0.857 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 9.648 -14.067 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.165 4.165 4 C -0.035 4.035 5 C -0.767 4.767 6 S 2.784 3.216 7 O -0.948 6.948 8 O -0.958 6.958 9 N -0.874 5.874 10 C -0.013 4.013 11 C -0.155 4.155 12 C -0.017 4.017 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.033 4.033 22 C -0.161 4.161 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.157 0.843 28 H 0.252 0.748 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.002 9.313 -14.799 20.659 hybrid contribution -0.053 0.277 1.442 1.469 sum -11.055 9.590 -13.357 19.814 Atomic orbital electron populations 1.20936 0.90650 1.03527 1.02844 1.20279 0.96463 0.93374 0.93283 1.21156 0.94185 0.97933 1.03184 1.20904 0.94681 0.96585 0.91312 1.31006 1.27469 0.99492 1.18725 1.01782 0.73604 0.73497 0.72684 1.93588 1.80503 1.44237 1.76431 1.93565 1.81592 1.43883 1.76806 1.55486 1.71833 1.28997 1.31111 1.21606 1.00096 0.86521 0.93036 1.21850 0.98387 1.01771 0.93482 1.19081 0.97229 0.91826 0.93547 1.21215 1.22603 1.08485 1.03697 0.92604 1.25020 0.95566 0.95393 0.98456 1.69958 1.36508 1.11957 1.34968 0.86583 0.80792 0.77253 0.83297 1.20699 1.21215 1.19860 1.21010 0.94792 0.96808 0.90666 1.21207 0.94228 0.98051 1.02633 0.90467 0.90835 0.90982 0.85181 0.84295 0.74795 0.92161 0.90485 0.92329 0.92583 0.96333 0.96139 0.92958 0.83961 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.03 -0.32 5.88 -104.62 -0.62 -0.94 16 3 C -0.15 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.02 -0.18 9.52 -39.58 -0.38 -0.55 16 5 C -0.68 -8.57 5.95 -39.58 -0.24 -8.80 16 6 S 2.69 37.38 5.74 -107.50 -0.62 36.76 16 7 O -0.96 -15.97 16.76 -57.17 -0.96 -16.93 16 8 O -0.97 -14.93 17.28 -57.17 -0.99 -15.92 16 9 N -1.11 -15.04 6.00 -10.61 -0.06 -15.10 16 10 C 0.11 1.79 6.22 -4.05 -0.03 1.77 16 11 C -0.12 -2.22 5.30 -26.73 -0.14 -2.36 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C -0.01 -0.16 9.52 -39.58 -0.38 -0.54 16 22 C -0.14 -1.49 9.70 -39.58 -0.38 -1.87 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 25 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.14 1.36 7.62 -52.49 -0.40 0.96 16 28 H 0.42 4.90 8.65 -34.46 -0.30 4.60 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.14 1.62 7.62 -52.49 -0.40 1.22 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -33.89 330.10 -9.93 -43.82 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.26 Total: 0.11 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -2.73 Total: -28.38 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.67 Total: -40.77 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.95 Total: -32.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 37.38 SS G_CDS: -0.62 Total: 36.76 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.89 -9.93 -43.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034625231.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.791 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds