Wall clock time and date at job start Tue Mar 31 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 C 1.52996 * 109.47557 * 240.00061 * 2 1 3 5 5 C 1.50700 * 109.47209 * 120.00007 * 2 1 3 6 6 C 1.38282 * 119.92770 * 60.00226 * 5 2 1 7 7 C 1.38099 * 120.07871 * 180.27478 * 6 5 2 8 8 C 1.38917 * 119.92201 * 359.45380 * 7 6 5 9 9 N 1.39669 * 120.07287 * 180.27525 * 8 7 6 10 10 S 1.65602 * 120.00057 * 314.09729 * 9 8 7 11 11 O 1.42105 * 106.40147 * 52.03036 * 10 9 8 12 12 O 1.42100 * 106.40290 * 184.95139 * 10 9 8 13 13 C 1.76202 * 107.21903 * 298.49102 * 10 9 8 14 14 H 1.07995 * 119.99910 * 4.89920 * 13 10 9 15 15 C 1.37879 * 119.99919 * 184.90059 * 13 10 9 16 16 N 1.31511 * 120.00028 * 0.02562 * 15 13 10 17 17 Si 1.86796 * 119.99724 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46983 * 90.00309 * 17 15 13 19 19 H 1.48507 * 109.46947 * 209.99967 * 17 15 13 20 20 H 1.48498 * 109.47550 * 330.00000 * 17 15 13 21 21 C 1.38906 * 119.84969 * 0.56471 * 8 7 6 22 22 C 1.38107 * 119.92701 * 359.70843 * 21 8 7 23 23 H 1.08994 * 109.47025 * 299.99750 * 1 2 3 24 24 H 1.08996 * 109.46748 * 60.00060 * 1 2 3 25 25 H 1.09001 * 109.46542 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46992 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47362 * 299.99564 * 3 2 1 28 28 H 1.08994 * 109.47068 * 60.00277 * 3 2 1 29 29 H 1.09000 * 109.47231 * 300.00630 * 4 2 1 30 30 H 1.09010 * 109.46850 * 59.99678 * 4 2 1 31 31 H 1.08995 * 109.47580 * 179.97438 * 4 2 1 32 32 H 1.08009 * 119.95855 * 359.97438 * 6 5 2 33 33 H 1.07994 * 120.04049 * 179.72062 * 7 6 5 34 34 H 0.97002 * 120.00384 * 134.10071 * 9 8 7 35 35 H 0.97001 * 120.00245 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.03841 * 179.68662 * 21 8 7 37 37 H 1.08000 * 119.96445 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6974 -2.0343 1.4478 7 6 2.1514 -2.6867 2.5771 8 6 2.9547 -2.0147 3.4897 9 7 3.4203 -2.6732 4.6301 10 16 2.3834 -3.5925 5.5368 11 8 1.7483 -4.4884 4.6349 12 8 3.1194 -4.0250 6.6728 13 6 1.1242 -2.5174 6.1395 14 1 1.0990 -1.4849 5.8238 15 6 0.1711 -2.9943 7.0143 16 7 0.2022 -4.2514 7.3992 17 14 -1.1633 -1.8543 7.6538 18 1 -2.3343 -1.9024 6.7419 19 1 -1.5760 -2.2886 9.0127 20 1 -0.6406 -0.4657 7.7154 21 6 3.2890 -0.6847 3.2686 22 6 2.8269 -0.0367 2.1399 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6767 -0.2073 -2.1392 31 1 3.1300 -0.7208 -1.2494 32 1 1.0760 -2.5574 0.7358 33 1 1.8857 -3.7193 2.7485 34 1 4.3510 -2.5920 4.8911 35 1 -0.4685 -4.5870 8.0144 36 1 3.9092 -0.1579 3.9787 37 1 3.0861 0.9975 1.9676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:06 Heat of formation + Delta-G solvation = -83.946087 kcal Electronic energy + Delta-G solvation = -20490.218323 eV Core-core repulsion = 17358.112052 eV Total energy + Delta-G solvation = -3132.106271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63801 -36.83381 -35.29764 -34.08701 -33.50532 -33.04990 -30.73906 -27.89093 -27.32043 -27.21563 -26.16612 -22.34147 -22.08801 -19.17498 -19.01557 -17.70549 -17.12237 -16.26702 -15.56310 -15.00244 -14.80268 -14.23996 -14.17836 -13.97966 -13.58888 -13.50170 -13.08906 -12.67754 -12.52818 -12.07400 -11.99442 -11.91052 -11.67927 -11.41166 -11.28088 -11.22610 -11.02013 -10.78851 -10.62143 -10.46181 -10.43294 -10.40594 -10.10131 -9.64315 -9.27425 -8.87801 -8.51020 -7.66316 -6.73585 -5.35677 1.68479 1.83287 2.24614 3.06059 3.12492 3.19477 4.03579 4.13872 4.56023 4.64338 4.72411 4.82666 5.03241 5.33586 5.36726 5.38702 5.54529 5.61943 5.66655 5.75763 5.81816 5.84553 5.88102 5.92077 6.02270 6.04322 6.09171 6.29994 6.33978 6.43385 6.54026 6.63880 6.81540 6.98028 7.11936 7.28862 7.39136 7.85287 7.95279 8.85614 10.20475 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.005524 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.812445 B = 5067.868093 C = 5710.852348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.142 4.142 4 C -0.137 4.137 5 C -0.100 4.100 6 C -0.094 4.094 7 C -0.145 4.145 8 C 0.174 3.826 9 N -1.077 6.077 10 S 2.706 3.294 11 O -1.000 7.000 12 O -0.996 6.996 13 C -1.012 5.012 14 H 0.104 0.896 15 C 0.134 3.866 16 N -0.845 5.845 17 Si 0.921 3.079 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.262 1.262 21 C -0.143 4.143 22 C -0.108 4.108 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.411 0.589 35 H 0.291 0.709 36 H 0.122 0.878 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.647 9.689 -13.251 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.199 4.199 4 C -0.195 4.195 5 C -0.101 4.101 6 C -0.113 4.113 7 C -0.166 4.166 8 C 0.077 3.923 9 N -0.821 5.821 10 S 2.807 3.193 11 O -0.990 6.990 12 O -0.987 6.987 13 C -1.146 5.146 14 H 0.122 0.878 15 C -0.084 4.084 16 N -0.474 5.474 17 Si 0.745 3.255 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.165 4.165 22 C -0.127 4.127 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.175 0.825 34 H 0.244 0.756 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.542 8.514 -12.988 15.736 hybrid contribution -0.548 1.188 0.716 1.491 sum 1.994 9.702 -12.271 15.770 Atomic orbital electron populations 1.21902 0.93946 1.02252 1.01566 1.19420 0.95543 0.94733 0.92863 1.21950 1.01050 0.95296 1.01649 1.21884 1.01120 1.00350 0.96105 1.19680 0.99628 0.94351 0.96415 1.20785 0.99412 0.93944 0.97118 1.21960 0.99281 1.02485 0.92849 1.17438 0.96800 0.91013 0.87072 1.53998 1.23779 1.67535 1.36767 1.00840 0.73310 0.73470 0.71644 1.93316 1.75941 1.63782 1.65925 1.93388 1.73808 1.81425 1.50041 1.30401 1.30179 1.12688 1.41350 0.87812 1.24733 0.96709 0.95152 0.91838 1.69892 1.34335 1.14130 1.29077 0.86144 0.80215 0.80782 0.78354 1.19086 1.19911 1.18608 1.21123 1.03476 0.93166 0.98757 1.20896 0.98224 0.99546 0.93986 0.92375 0.92798 0.92259 0.92382 0.92777 0.92256 0.92344 0.92791 0.92607 0.86136 0.82527 0.75588 0.89811 0.86015 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.29 37.16 0.31 -1.20 16 2 C -0.03 -0.28 0.85 -155.66 -0.13 -0.42 16 3 C -0.14 -1.35 7.13 37.16 0.27 -1.08 16 4 C -0.14 -1.35 8.29 37.16 0.31 -1.04 16 5 C -0.10 -1.41 4.76 -104.59 -0.50 -1.91 16 6 C -0.09 -1.50 8.70 -39.62 -0.34 -1.85 16 7 C -0.14 -2.80 9.23 -39.38 -0.36 -3.17 16 8 C 0.17 3.34 6.14 -83.79 -0.51 2.82 16 9 N -1.08 -22.01 5.77 32.41 0.19 -21.82 16 10 S 2.71 71.44 4.94 -107.50 -0.53 70.91 16 11 O -1.00 -28.22 15.14 -57.17 -0.87 -29.08 16 12 O -1.00 -29.00 17.91 -57.17 -1.02 -30.02 16 13 C -1.01 -28.00 9.60 30.60 0.29 -27.71 16 14 H 0.10 2.69 7.81 -52.49 -0.41 2.28 16 15 C 0.13 3.73 5.46 -17.82 -0.10 3.64 16 16 N -0.84 -24.69 13.10 55.43 0.73 -23.96 16 17 Si 0.92 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.14 -2.32 9.97 -39.38 -0.39 -2.71 16 22 C -0.11 -1.53 8.97 -39.61 -0.36 -1.89 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.65 7.38 -51.93 -0.38 0.27 16 26 H 0.06 0.53 7.51 -51.92 -0.39 0.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.57 7.51 -51.93 -0.39 0.18 16 29 H 0.06 0.58 7.38 -51.93 -0.38 0.20 16 30 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.12 1.68 7.09 -52.48 -0.37 1.30 16 33 H 0.16 3.36 5.69 -52.49 -0.30 3.06 16 34 H 0.41 7.05 8.96 -34.47 -0.31 6.74 16 35 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.12 1.42 5.88 -52.49 -0.31 1.11 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -33.62 317.40 -8.19 -41.81 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.92 Total: 8.19 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: -1.52 Total: -36.51 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.91 Total: -45.79 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -1.89 Total: -59.11 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 71.44 SS G_CDS: -0.53 Total: 70.91 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.62 -8.19 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.137 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds