Wall clock time and date at job start Tue Mar 31 2020 05:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 N 1.46502 * 109.47002 * 270.01830 * 8 7 6 10 10 S 1.65597 * 120.00294 * 165.00036 * 9 8 7 11 11 O 1.42101 * 106.40773 * 178.53943 * 10 9 8 12 12 O 1.42109 * 106.40134 * 311.46032 * 10 9 8 13 13 C 1.76204 * 107.21836 * 64.99598 * 10 9 8 14 14 H 1.07995 * 119.99973 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99862 * 179.97438 * 13 10 9 16 16 N 1.31513 * 119.99730 * 180.02562 * 15 13 10 17 17 Si 1.86796 * 120.00156 * 0.02562 * 15 13 10 18 18 H 1.48494 * 109.47522 * 89.99521 * 17 15 13 19 19 H 1.48502 * 109.47180 * 209.99940 * 17 15 13 20 20 H 1.48505 * 109.46994 * 329.99669 * 17 15 13 21 21 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 22 22 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 32 32 H 1.08993 * 109.47425 * 30.01501 * 8 7 6 33 33 H 1.09005 * 109.47338 * 150.01905 * 8 7 6 34 34 H 0.97003 * 120.00196 * 344.99769 * 9 8 7 35 35 H 0.97000 * 120.00059 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.00252 * 179.97438 * 21 7 6 37 37 H 1.07991 * 120.00142 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 7 2.4910 -3.7518 -5.1172 10 16 2.5830 -4.4342 -6.6232 11 8 1.5462 -5.4038 -6.6885 12 8 2.7004 -3.3587 -7.5446 13 6 4.1019 -5.3239 -6.7008 14 1 4.7627 -5.3397 -5.8467 15 6 4.4464 -6.0007 -7.8516 16 7 5.5799 -6.6652 -7.9093 17 14 3.3032 -5.9740 -9.3286 18 1 3.6469 -4.8217 -10.1999 19 1 3.4550 -7.2368 -10.0951 20 1 1.8985 -5.8422 -8.8650 21 6 3.2875 -2.4861 -2.2324 22 6 2.8271 -1.8343 -1.1037 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0688 0.6339 -2.5850 31 1 1.8972 -0.5213 -4.5956 32 1 3.5770 -2.0055 -5.5288 33 1 4.4162 -3.1921 -4.5012 34 1 1.7981 -4.0326 -4.4990 35 1 5.8221 -7.1417 -8.7187 36 1 3.9084 -3.3643 -2.1333 37 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045047067.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:43 Heat of formation + Delta-G solvation = -75.607246 kcal Electronic energy + Delta-G solvation = -19737.499822 eV Core-core repulsion = 16605.755150 eV Total energy + Delta-G solvation = -3131.744671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69767 -36.28339 -35.57466 -34.40961 -33.97418 -33.01416 -30.91375 -29.84626 -27.36842 -26.40985 -25.34854 -22.87106 -21.92791 -19.99136 -19.11448 -17.47864 -16.87497 -16.41810 -15.83857 -15.30097 -14.93473 -14.73203 -14.19606 -13.83869 -13.75731 -13.55441 -13.38813 -13.29116 -12.93752 -12.60361 -12.47756 -12.32467 -11.94227 -11.50944 -11.36798 -11.32140 -11.24875 -10.86243 -10.73363 -10.61436 -10.58823 -10.48089 -9.84843 -9.23090 -9.20035 -8.86876 -8.59276 -8.51808 -6.79414 -5.33178 1.28450 1.45829 2.15236 3.08577 3.19136 3.28469 3.75710 3.96748 4.46620 4.49198 4.60741 4.61806 4.94649 4.98034 4.99673 5.05970 5.24106 5.34110 5.38495 5.45135 5.50138 5.59421 5.68528 5.74970 5.81071 5.89711 6.00145 6.01060 6.12715 6.14633 6.19997 6.43092 6.60861 6.61934 6.75793 7.04658 7.48592 7.75388 8.21571 8.71761 10.32950 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.041891 B = 0.003694 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.236094 B = 7577.276376 C = 7792.969124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.092 4.092 8 C 0.164 3.836 9 N -1.120 6.120 10 S 2.676 3.324 11 O -1.008 7.008 12 O -1.012 7.012 13 C -1.016 5.016 14 H 0.121 0.879 15 C 0.153 3.847 16 N -0.824 5.824 17 Si 0.803 3.197 18 H -0.246 1.246 19 H -0.256 1.256 20 H -0.220 1.220 21 C -0.101 4.101 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.406 0.594 35 H 0.280 0.720 36 H 0.126 0.874 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 12.716 14.814 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.081 4.081 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.094 4.094 8 C 0.038 3.962 9 N -0.876 5.876 10 S 2.778 3.222 11 O -0.999 6.999 12 O -1.002 7.002 13 C -1.150 5.150 14 H 0.139 0.861 15 C -0.067 4.067 16 N -0.453 5.453 17 Si 0.623 3.377 18 H -0.170 1.170 19 H -0.180 1.180 20 H -0.142 1.142 21 C -0.120 4.120 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.125 12.765 13.913 19.850 hybrid contribution 0.108 -0.557 -0.147 0.586 sum -6.016 12.209 13.766 19.358 Atomic orbital electron populations 1.21860 0.94409 1.02095 1.01800 1.20116 0.95905 0.95989 0.95467 1.21855 1.01277 0.95174 1.01801 1.19846 0.97812 0.95851 0.94555 1.20925 1.00650 1.00222 0.91865 1.21161 0.96715 0.95172 0.98871 1.20036 0.98522 0.96010 0.94809 1.20049 0.91810 0.90035 0.94354 1.55528 1.42441 1.53507 1.36131 1.01320 0.76362 0.73685 0.70856 1.93476 1.59968 1.61212 1.85208 1.93401 1.88875 1.57103 1.60788 1.30468 1.27161 1.47962 1.09421 0.86087 1.24434 0.94194 0.90538 0.97499 1.69989 1.20539 1.25943 1.28848 0.87846 0.84351 0.80856 0.84679 1.17006 1.17954 1.14197 1.21153 0.99506 0.99552 0.91771 1.21015 0.98694 0.95782 0.98450 0.92406 0.92469 0.92561 0.90620 0.92421 0.92565 0.92509 0.86292 0.85665 0.89768 0.90934 0.76241 0.90920 0.85587 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.00 37.16 0.33 -0.78 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.07 9.01 37.16 0.33 -0.74 16 4 C -0.08 -0.86 4.78 -104.62 -0.50 -1.36 16 5 C -0.12 -1.34 8.71 -39.58 -0.34 -1.68 16 6 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 7 C -0.09 -1.31 5.28 -104.62 -0.55 -1.86 16 8 C 0.16 2.75 6.35 -5.19 -0.03 2.72 16 9 N -1.12 -21.44 5.99 -11.66 -0.07 -21.51 16 10 S 2.68 66.50 4.24 -107.50 -0.46 66.04 16 11 O -1.01 -27.13 16.02 -57.17 -0.92 -28.05 16 12 O -1.01 -26.79 16.30 -57.17 -0.93 -27.73 16 13 C -1.02 -28.24 10.26 30.60 0.31 -27.92 16 14 H 0.12 3.37 8.06 -52.49 -0.42 2.95 16 15 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 16 N -0.82 -23.85 13.96 55.43 0.77 -23.07 16 17 Si 0.80 20.68 26.54 -169.99 -4.51 16.16 16 18 H -0.25 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.22 -5.77 5.61 56.52 0.32 -5.45 16 21 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 22 C -0.12 -1.36 9.67 -39.58 -0.38 -1.74 16 23 H 0.06 0.45 7.37 -51.93 -0.38 0.06 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 27 H 0.06 0.43 7.41 -51.93 -0.38 0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.12 1.12 7.10 -52.48 -0.37 0.75 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 33 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 34 H 0.41 6.87 8.65 -34.46 -0.30 6.58 16 35 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.12 1.09 7.95 -52.49 -0.42 0.68 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -32.67 321.07 -8.51 -41.18 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.26 Total: 5.31 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: -1.98 Total: -33.19 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.70 Total: -44.58 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -1.85 Total: -55.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.51 Total: 16.16 kcal Atomic # 16 Polarization: 66.50 SS G_CDS: -0.46 Total: 66.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.67 -8.51 -41.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045047067.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.423 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds