Wall clock time and date at job start Tue Mar 31 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38259 * 119.99988 * 2 1 4 4 C 1.38216 * 119.99788 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99877 * 359.86351 * 4 3 2 6 6 C 1.50702 * 120.00157 * 180.21033 * 5 4 3 7 7 C 1.38217 * 120.00156 * 0.38958 * 5 4 3 8 8 S 1.76197 * 120.00152 * 179.81109 * 7 5 4 9 9 O 1.42105 * 106.40198 * 310.87569 * 8 7 5 10 10 O 1.42102 * 106.40323 * 177.95485 * 8 7 5 11 11 N 1.65603 * 107.21903 * 64.41424 * 8 7 5 12 12 C 1.46501 * 119.99641 * 65.97287 * 11 8 7 13 13 H 1.08990 * 109.47338 * 23.04106 * 12 11 8 14 14 C 1.52998 * 109.47174 * 263.03935 * 12 11 8 15 15 C 1.50698 * 109.46919 * 143.04491 * 12 11 8 16 16 H 1.08004 * 120.00111 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99998 * 180.02562 * 15 12 11 18 18 N 1.31518 * 119.99959 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 120.00024 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46901 * 59.99724 * 19 17 15 21 21 H 1.48501 * 109.46932 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.46967 * 299.99651 * 19 17 15 23 23 C 1.38215 * 119.99683 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.46668 * 269.97828 * 1 2 3 25 25 H 1.09002 * 109.46750 * 29.97794 * 1 2 3 26 26 H 1.08994 * 109.46762 * 149.97396 * 1 2 3 27 27 H 1.07996 * 119.99989 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.99901 * 180.02562 * 4 3 2 29 29 H 1.09010 * 109.46574 * 272.48352 * 6 5 4 30 30 H 1.08996 * 109.47137 * 32.48055 * 6 5 4 31 31 H 1.08997 * 109.47547 * 152.48951 * 6 5 4 32 32 H 0.96996 * 120.00179 * 245.97471 * 11 8 7 33 33 H 1.08997 * 109.47245 * 174.13419 * 14 12 11 34 34 H 1.09006 * 109.47157 * 54.12998 * 14 12 11 35 35 H 1.09003 * 109.47128 * 294.13565 * 14 12 11 36 36 H 0.97004 * 119.99692 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.00010 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0039 6 6 5.7788 -0.0001 0.0093 7 6 3.5806 -1.1970 -0.0014 8 16 4.4616 -2.7230 -0.0021 9 8 5.4383 -2.6219 -1.0293 10 8 3.4822 -3.7517 0.0407 11 7 5.2934 -2.8095 1.4273 12 6 4.5644 -2.9115 2.6939 13 1 3.5705 -3.3189 2.5093 14 6 4.4375 -1.5224 3.3226 15 6 5.3138 -3.8212 3.6329 16 1 6.2403 -4.2781 3.3175 17 6 4.8163 -4.0712 4.8943 18 7 3.6879 -3.5152 5.2781 19 14 5.7449 -5.1995 6.0580 20 1 7.0991 -4.6446 6.3099 21 1 5.0054 -5.3038 7.3415 22 1 5.8680 -6.5474 5.4473 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3632 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6584 2.1326 0.0004 28 1 4.1205 2.1326 0.0010 29 1 6.1457 0.0436 -1.0163 30 1 6.1402 0.8671 0.5618 31 1 6.1404 -0.9112 0.4860 32 1 6.2632 -2.7926 1.4258 33 1 3.8072 -1.5814 4.2099 34 1 3.9889 -0.8375 2.6031 35 1 5.4262 -1.1587 3.6028 36 1 3.3381 -3.6908 6.1657 37 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336892.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:48 Heat of formation + Delta-G solvation = -61.540407 kcal Electronic energy + Delta-G solvation = -20991.139793 eV Core-core repulsion = 17860.005106 eV Total energy + Delta-G solvation = -3131.134688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38958 -36.72852 -35.53259 -35.27178 -33.80579 -32.17693 -31.10212 -29.26253 -28.28426 -25.23370 -24.87479 -23.17980 -21.18761 -20.92978 -18.78094 -17.39869 -16.80316 -16.18656 -15.73592 -15.51238 -15.05633 -14.42154 -14.14926 -14.01685 -13.60559 -13.24960 -12.82708 -12.67805 -12.59416 -12.22777 -12.04877 -11.89776 -11.72961 -11.60662 -11.50298 -11.36201 -11.16484 -11.10742 -10.95299 -10.67055 -10.34143 -10.28109 -10.07809 -9.23519 -9.13015 -8.62219 -8.43094 -8.27708 -6.11741 -4.18480 0.91195 1.15226 1.41875 3.28516 3.33034 3.35535 3.50089 3.80731 4.30348 4.37652 4.69737 4.83199 4.92304 5.11691 5.17156 5.21281 5.29976 5.50840 5.61651 5.63214 5.74429 5.78246 5.98811 6.01758 6.23182 6.26262 6.35322 6.45846 6.52575 6.79721 6.84926 7.00411 7.01897 7.57595 7.65696 7.86695 8.00540 8.26419 8.83600 9.47117 10.94782 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.006068 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.829528 B = 4612.891545 C = 5040.395698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.117 4.117 3 C -0.069 4.069 4 C -0.143 4.143 5 C 0.018 3.982 6 C -0.140 4.140 7 C -0.662 4.662 8 S 2.689 3.311 9 O -0.980 6.980 10 O -0.964 6.964 11 N -1.099 6.099 12 C 0.270 3.730 13 H 0.051 0.949 14 C -0.154 4.154 15 C -0.522 4.522 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.089 0.911 34 H 0.014 0.986 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 10.032 -8.758 13.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.161 4.161 5 C 0.016 3.984 6 C -0.197 4.197 7 C -0.748 4.748 8 S 2.778 3.222 9 O -0.970 6.970 10 O -0.954 6.954 11 N -0.860 5.860 12 C 0.166 3.834 13 H 0.069 0.931 14 C -0.214 4.214 15 C -0.562 4.562 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.035 4.035 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.107 0.893 34 H 0.033 0.967 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.597 9.420 -9.256 13.460 hybrid contribution 0.563 0.240 1.113 1.271 sum -2.033 9.661 -8.142 12.797 Atomic orbital electron populations 1.20782 0.90770 1.02692 1.02688 1.19973 0.96364 0.93133 1.02290 1.21212 0.94242 0.97510 0.95723 1.21057 0.94287 0.97515 1.03290 1.19469 0.95721 0.91871 0.91294 1.21218 0.90533 1.04139 1.03822 1.31009 1.06231 1.20409 1.17110 1.01903 0.73559 0.73809 0.72966 1.93538 1.59800 1.87479 1.56170 1.93549 1.61972 1.53256 1.86607 1.55567 1.17794 1.89871 1.22796 1.18606 0.92438 0.93735 0.78661 0.93105 1.22251 1.00784 0.96658 1.01681 1.21187 1.08697 1.28146 0.98143 0.91768 1.24912 0.95042 0.95980 0.97915 1.69875 1.19488 1.43345 1.19945 0.86506 0.79660 0.81142 0.79779 1.20207 1.21216 1.20103 1.20851 0.92018 0.98850 0.91781 0.90867 0.91694 0.91293 0.85752 0.85514 0.89221 0.90272 0.90870 0.75731 0.89279 0.96748 0.94607 0.92580 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.84 16 2 C -0.12 -1.62 5.88 -104.62 -0.62 -2.24 16 3 C -0.07 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.14 -1.89 9.71 -39.58 -0.38 -2.28 16 5 C 0.02 0.27 5.38 -104.62 -0.56 -0.29 16 6 C -0.14 -1.94 8.82 36.01 0.32 -1.62 16 7 C -0.66 -11.58 4.97 -39.58 -0.20 -11.78 16 8 S 2.69 52.60 4.91 -107.50 -0.53 52.08 16 9 O -0.98 -19.50 16.47 -57.17 -0.94 -20.44 16 10 O -0.96 -21.73 16.27 -57.17 -0.93 -22.66 16 11 N -1.10 -22.22 4.34 -5.89 -0.03 -22.25 16 12 C 0.27 6.48 2.91 -69.08 -0.20 6.28 16 13 H 0.05 1.35 7.46 -51.93 -0.39 0.97 16 14 C -0.15 -3.49 9.20 37.16 0.34 -3.15 16 15 C -0.52 -13.72 8.77 -34.44 -0.30 -14.02 16 16 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -24.38 11.39 55.43 0.63 -23.75 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.02 -0.26 9.20 -39.58 -0.36 -0.63 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.07 1.08 4.88 -51.93 -0.25 0.83 16 32 H 0.41 7.38 8.37 -34.47 -0.29 7.09 16 33 H 0.09 2.23 6.25 -51.93 -0.32 1.91 16 34 H 0.01 0.28 6.65 -51.93 -0.35 -0.06 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.14 2.29 7.33 -52.49 -0.38 1.91 16 LS Contribution 315.99 15.07 4.76 4.76 Total: -1.00 -31.26 315.99 -9.04 -40.30 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -4.90 Total: 6.49 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -2.08 Total: -30.20 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.61 Total: -46.00 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.87 Total: -43.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.53 Total: 52.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.26 -9.04 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336892.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.239 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds