Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47000 * 2 1 4 4 C 1.38230 * 120.00169 * 269.72310 * 3 2 1 5 5 C 1.38233 * 120.00217 * 179.74364 * 4 3 2 6 6 C 1.38240 * 119.99643 * 0.53499 * 5 4 3 7 7 S 1.76198 * 120.00120 * 179.76735 * 6 5 4 8 8 O 1.42099 * 106.40293 * 23.51562 * 7 6 5 9 9 O 1.42099 * 106.40194 * 156.43931 * 7 6 5 10 10 N 1.65599 * 107.21609 * 269.97993 * 7 6 5 11 11 C 1.36939 * 120.00484 * 90.00126 * 10 7 6 12 12 H 1.08004 * 119.99302 * 326.59649 * 11 10 7 13 13 C 1.38810 * 120.00201 * 146.59547 * 11 10 7 14 14 N 1.31616 * 119.99950 * 336.10463 * 13 11 10 15 15 Si 1.86799 * 119.99849 * 156.10698 * 13 11 10 16 16 H 1.48504 * 109.47071 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47459 * 119.99775 * 15 13 11 18 18 H 1.48506 * 109.46911 * 240.00202 * 15 13 11 19 19 C 1.46500 * 119.99537 * 269.99569 * 10 7 6 20 20 C 1.52998 * 109.47046 * 95.97125 * 19 10 7 21 21 C 1.38239 * 120.00087 * 359.74244 * 6 5 4 22 22 C 1.38235 * 119.99530 * 89.99975 * 3 2 1 23 23 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47045 * 59.99645 * 1 2 3 25 25 H 1.09002 * 109.47026 * 299.99912 * 1 2 3 26 26 H 1.09000 * 109.47045 * 120.00355 * 2 1 3 27 27 H 1.09002 * 109.47026 * 240.00088 * 2 1 3 28 28 H 1.08007 * 119.99844 * 0.02562 * 4 3 2 29 29 H 1.08000 * 120.00521 * 180.30175 * 5 4 3 30 30 H 0.97004 * 120.00110 * 179.97438 * 14 13 11 31 31 H 1.09008 * 109.47024 * 215.96416 * 19 10 7 32 32 H 1.09000 * 109.47682 * 335.97034 * 19 10 7 33 33 H 1.09002 * 109.47557 * 59.99910 * 20 19 10 34 34 H 1.09001 * 109.47701 * 179.97438 * 20 19 10 35 35 H 1.09005 * 109.47103 * 299.99728 * 20 19 10 36 36 H 1.07991 * 119.99975 * 179.97438 * 21 6 5 37 37 H 1.07994 * 120.00164 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7238 3.3757 -1.1971 6 6 2.9542 4.0273 0.0001 7 16 3.5409 5.6887 0.0002 8 8 3.1614 6.2484 -1.2496 9 8 3.1610 6.2484 1.2499 10 7 5.1957 5.6242 0.0004 11 6 5.8801 5.5976 -1.1854 12 1 5.4542 5.0988 -2.0435 13 6 7.1211 6.2115 -1.2845 14 7 7.4410 7.1858 -0.4595 15 14 8.3370 5.6548 -2.5887 16 1 7.7402 4.5510 -3.3829 17 1 8.6567 6.7941 -3.4860 18 1 9.5809 5.1763 -1.9337 19 6 5.9274 5.5957 1.2693 20 6 6.2560 4.1472 1.6360 21 6 2.7239 3.3756 1.1973 22 6 2.2626 2.0724 1.1972 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.0920 1.5601 -2.1324 29 1 2.9035 3.8850 -2.1324 30 1 8.3084 7.6146 -0.5284 31 1 6.8523 6.1637 1.1681 32 1 5.3129 6.0385 2.0531 33 1 6.8706 3.7043 0.8523 34 1 6.8008 4.1259 2.5799 35 1 5.3312 3.5792 1.7371 36 1 2.9043 3.8845 2.1325 37 1 2.0830 1.5632 2.1324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057539131.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = -52.776196 kcal Electronic energy + Delta-G solvation = -20817.765247 eV Core-core repulsion = 17687.010605 eV Total energy + Delta-G solvation = -3130.754643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.17277 -36.13287 -35.83642 -34.67218 -34.19502 -31.64200 -30.78921 -29.45932 -29.18888 -24.58643 -24.18639 -22.59656 -21.63303 -21.01992 -18.56459 -17.69170 -16.69726 -16.22112 -15.56807 -15.39931 -14.68423 -14.29571 -14.20812 -13.74059 -13.55022 -13.40322 -13.18654 -12.82305 -12.65436 -12.26889 -12.12375 -11.82646 -11.38630 -11.28310 -11.24263 -11.01446 -10.96979 -10.89528 -10.83511 -10.77399 -10.36999 -10.15164 -10.05812 -9.76414 -9.08446 -8.79808 -8.76184 -7.69347 -6.23456 -3.91711 1.09525 1.56968 1.58412 3.20797 3.29828 3.34026 3.68837 4.18854 4.51116 4.66396 4.76565 4.80267 5.04022 5.08877 5.12352 5.20339 5.40720 5.42124 5.57685 5.70101 5.74392 5.92089 5.95953 6.04998 6.10152 6.21841 6.28551 6.38731 6.41592 6.52082 6.62195 6.63503 6.95380 7.11450 7.32654 7.44544 7.82097 8.45636 9.03611 9.41131 10.78385 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.005925 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.413755 B = 4724.276752 C = 5076.020191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.045 4.045 4 C -0.144 4.144 5 C -0.015 4.015 6 C -0.655 4.655 7 S 2.636 3.364 8 O -0.972 6.972 9 O -0.997 6.997 10 N -0.841 5.841 11 C -0.286 4.286 12 H 0.091 0.909 13 C 0.039 3.961 14 N -0.858 5.858 15 Si 0.913 3.087 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.109 3.891 20 C -0.163 4.163 21 C -0.021 4.021 22 C -0.145 4.145 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.138 0.862 30 H 0.266 0.734 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.135 0.865 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -12.660 2.246 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.045 4.045 4 C -0.163 4.163 5 C -0.034 4.034 6 C -0.739 4.739 7 S 2.732 3.268 8 O -0.962 6.962 9 O -0.987 6.987 10 N -0.673 5.673 11 C -0.421 4.421 12 H 0.109 0.891 13 C -0.168 4.168 14 N -0.498 5.498 15 Si 0.740 3.260 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.018 4.018 20 C -0.222 4.222 21 C -0.040 4.040 22 C -0.164 4.164 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.153 0.847 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.290 -11.825 2.318 14.083 hybrid contribution 0.700 -0.998 -0.584 1.352 sum -6.589 -12.823 1.734 14.521 Atomic orbital electron populations 1.21742 0.94550 1.01654 1.02446 1.20620 0.96300 0.92655 1.03031 1.20084 0.95294 0.95656 0.93469 1.21092 1.02362 0.95259 0.97542 1.20946 0.91488 0.93817 0.97135 1.31507 1.15533 1.28134 0.98709 1.04486 0.75597 0.73764 0.72930 1.93438 1.83326 1.74987 1.44453 1.93411 1.84102 1.75673 1.45531 1.52592 1.18351 1.86077 1.10290 1.19091 1.01242 1.32012 0.89756 0.89131 1.25281 0.99771 0.93991 0.97761 1.69981 1.22241 1.19460 1.38093 0.86097 0.80397 0.78893 0.80617 1.19273 1.20806 1.20688 1.21384 1.00979 0.95545 0.83934 1.22201 1.00516 0.99261 1.00252 1.20887 0.92320 0.93931 0.96884 1.21056 1.02562 0.95257 0.97502 0.92361 0.92424 0.92447 0.90847 0.90811 0.85736 0.84388 0.92353 0.86624 0.92268 0.92281 0.93439 0.94402 0.84713 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.92 16 2 C -0.09 -0.87 6.07 -27.88 -0.17 -1.04 16 3 C -0.04 -0.60 5.13 -104.62 -0.54 -1.14 16 4 C -0.14 -2.10 9.70 -39.59 -0.38 -2.49 16 5 C -0.01 -0.26 9.52 -39.58 -0.38 -0.64 16 6 C -0.66 -12.74 5.97 -39.58 -0.24 -12.98 16 7 S 2.64 61.78 5.65 -107.50 -0.61 61.17 16 8 O -0.97 -25.31 16.50 -57.17 -0.94 -26.25 16 9 O -1.00 -24.53 15.83 -57.17 -0.90 -25.43 16 10 N -0.84 -20.61 2.85 -59.91 -0.17 -20.78 16 11 C -0.29 -7.40 8.87 -15.06 -0.13 -7.54 16 12 H 0.09 2.28 7.94 -52.48 -0.42 1.87 16 13 C 0.04 1.00 4.98 -17.43 -0.09 0.91 16 14 N -0.86 -22.97 11.27 55.49 0.63 -22.34 16 15 Si 0.91 19.93 29.62 -169.99 -5.03 14.90 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.11 2.46 6.01 -4.04 -0.02 2.44 16 20 C -0.16 -3.09 10.20 37.16 0.38 -2.72 16 21 C -0.02 -0.36 8.53 -39.58 -0.34 -0.70 16 22 C -0.15 -2.06 9.70 -39.58 -0.38 -2.45 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.14 2.43 7.62 -52.49 -0.40 2.03 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.12 2.86 5.31 -51.92 -0.28 2.58 16 32 H 0.06 1.31 6.90 -51.93 -0.36 0.95 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.66 7.11 -51.93 -0.37 0.29 16 36 H 0.14 2.20 7.62 -52.49 -0.40 1.80 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -31.02 321.42 -9.27 -40.29 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.15 Total: 2.86 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: -1.92 Total: -29.24 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.45 Total: -43.12 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.85 Total: -51.69 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Atomic # 16 Polarization: 61.78 SS G_CDS: -0.61 Total: 61.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.02 -9.27 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057539131.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.488 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds