Wall clock time and date at job start Tue Mar 31 2020 05:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47502 * 2 1 4 4 C 1.50704 * 109.46902 * 120.00275 * 2 1 3 5 5 C 1.38234 * 120.00277 * 120.00076 * 4 2 1 6 6 C 1.38230 * 119.99885 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00326 * 359.97438 * 6 5 4 8 8 S 1.76199 * 120.00342 * 179.70391 * 7 6 5 9 9 O 1.42099 * 106.40466 * 203.54194 * 8 7 6 10 10 O 1.42098 * 106.40181 * 336.46004 * 8 7 6 11 11 N 1.65602 * 107.21888 * 89.99875 * 8 7 6 12 12 C 1.46500 * 119.99756 * 65.00258 * 11 8 7 13 13 C 1.50704 * 109.46838 * 165.00218 * 12 11 8 14 14 H 1.07999 * 119.99673 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99993 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00018 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46923 * 90.00470 * 17 15 13 19 19 H 1.48500 * 109.47190 * 210.00101 * 17 15 13 20 20 H 1.48497 * 109.47213 * 330.00070 * 17 15 13 21 21 C 1.38234 * 119.99814 * 359.97438 * 7 6 5 22 22 C 1.38235 * 119.99518 * 300.01759 * 4 2 1 23 23 H 1.08997 * 109.47466 * 300.00578 * 1 2 3 24 24 H 1.09007 * 109.47020 * 59.99975 * 1 2 3 25 25 H 1.08997 * 109.47662 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46966 * 239.99231 * 2 1 3 27 27 H 1.08995 * 109.46969 * 59.99751 * 3 2 1 28 28 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47004 * 300.00035 * 3 2 1 30 30 H 1.07992 * 119.99701 * 359.97438 * 5 4 2 31 31 H 1.08000 * 120.00356 * 179.97438 * 6 5 4 32 32 H 0.97000 * 119.99945 * 245.00458 * 11 8 7 33 33 H 1.09000 * 109.47104 * 284.99861 * 12 11 8 34 34 H 1.08996 * 109.47400 * 45.00315 * 12 11 8 35 35 H 0.97003 * 119.99749 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.00299 * 179.97438 * 21 7 6 37 37 H 1.07997 * 120.00423 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2872 -2.4863 2.2324 7 6 2.9532 -2.0141 3.4879 8 16 3.5334 -2.8497 4.9266 9 8 2.6331 -2.5169 5.9744 10 8 3.8057 -4.1871 4.5314 11 7 4.9910 -2.1755 5.3307 12 6 5.0577 -0.7750 5.7555 13 6 6.3905 -0.5108 6.4074 14 1 7.1151 -1.3066 6.4967 15 6 6.6847 0.7469 6.8898 16 7 5.8020 1.7158 6.7814 17 14 8.3364 1.0742 7.6986 18 1 9.3134 1.5118 6.6694 19 1 8.1842 2.1400 8.7214 20 1 8.8247 -0.1688 8.3478 21 6 2.1594 -0.8896 3.6147 22 6 1.6979 -0.2384 2.4860 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5140 -0.8900 27 1 1.6767 1.9562 0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.0876 -2.2036 0.1228 31 1 3.9078 -3.3647 2.1334 32 1 5.8006 -2.7079 5.2860 33 1 4.9430 -0.1261 4.8872 34 1 4.2582 -0.5731 6.4682 35 1 6.0092 2.6007 7.1205 36 1 1.8980 -0.5208 4.5956 37 1 1.0771 0.6398 2.5851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057539136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:29 Heat of formation + Delta-G solvation = -71.257495 kcal Electronic energy + Delta-G solvation = -20048.511821 eV Core-core repulsion = 16916.955769 eV Total energy + Delta-G solvation = -3131.556052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53436 -36.68558 -35.55901 -35.28203 -34.60758 -32.15120 -30.96167 -29.97520 -27.32730 -26.73720 -23.80220 -22.76607 -22.44318 -20.29521 -19.01752 -17.70230 -17.25264 -16.03090 -15.92175 -15.48905 -15.04173 -14.54117 -14.50084 -13.97734 -13.76175 -13.52826 -13.37746 -13.05316 -12.72260 -12.53263 -12.25890 -12.10767 -11.80380 -11.59291 -11.53942 -11.41508 -11.35909 -11.23114 -10.95594 -10.78098 -10.74794 -10.37876 -10.12073 -9.43674 -9.03971 -8.90532 -8.87018 -8.22826 -6.18528 -4.23002 0.85711 1.12444 1.44693 3.24860 3.31442 3.34720 3.48684 3.83381 4.30277 4.34563 4.46107 4.59597 4.80434 4.98749 5.02063 5.13914 5.18950 5.23790 5.41347 5.43751 5.54463 5.64616 5.70010 5.77104 5.85200 6.00771 6.06724 6.08166 6.27363 6.31207 6.44939 6.54011 6.96858 7.28128 7.34014 7.79330 7.80870 8.17417 8.81172 9.41966 10.91898 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016515 B = 0.005112 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.057710 B = 5476.513311 C = 6593.976568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.030 4.030 5 C -0.145 4.145 6 C -0.018 4.018 7 C -0.672 4.672 8 S 2.690 3.310 9 O -0.964 6.964 10 O -0.982 6.982 11 N -1.103 6.103 12 C 0.246 3.754 13 C -0.529 4.529 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.010 4.010 22 C -0.138 4.138 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.410 0.590 33 H 0.022 0.978 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.142 0.858 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.038 -2.596 -13.577 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 C -0.203 4.203 4 C -0.030 4.030 5 C -0.164 4.164 6 C -0.037 4.037 7 C -0.758 4.758 8 S 2.779 3.221 9 O -0.953 6.953 10 O -0.972 6.972 11 N -0.865 5.865 12 C 0.123 3.877 13 C -0.569 4.569 14 H 0.084 0.916 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.029 4.029 22 C -0.156 4.156 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.245 0.755 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.687 -2.937 -13.091 15.983 hybrid contribution 1.294 0.685 -0.196 1.477 sum -7.393 -2.252 -13.287 15.371 Atomic orbital electron populations 1.21864 0.94033 1.02127 1.02175 1.20242 0.96198 0.96422 0.95199 1.21871 1.01641 0.94658 1.02170 1.20145 0.94071 0.93958 0.94847 1.21102 1.00067 0.96567 0.98660 1.20866 0.94621 0.97256 0.90936 1.31149 1.14040 1.12202 1.18372 1.01815 0.73667 0.72813 0.73824 1.93560 1.64320 1.84585 1.52884 1.93518 1.85171 1.34390 1.84099 1.55439 1.23928 1.24759 1.82416 1.19086 0.99320 0.74162 0.95151 1.21203 1.00260 0.96212 1.39246 0.91590 1.24966 0.97566 0.95846 0.95782 1.69938 1.34617 1.02312 1.45993 0.86413 0.83236 0.78161 0.79117 1.20532 1.21017 1.19669 1.21004 0.90928 0.90989 0.99950 1.21074 1.01947 1.00773 0.91843 0.92153 0.92233 0.92475 0.90248 0.92051 0.92207 0.92272 0.85542 0.84503 0.75535 0.96045 0.94339 0.92475 0.84030 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.01 37.16 0.33 -0.88 16 2 C -0.06 -0.59 3.09 -91.77 -0.28 -0.88 16 3 C -0.15 -1.36 9.01 37.16 0.33 -1.03 16 4 C -0.03 -0.38 4.78 -104.62 -0.50 -0.88 16 5 C -0.15 -1.88 9.67 -39.59 -0.38 -2.26 16 6 C -0.02 -0.26 9.52 -39.59 -0.38 -0.64 16 7 C -0.67 -11.43 5.95 -39.58 -0.24 -11.66 16 8 S 2.69 51.16 5.74 -107.50 -0.62 50.55 16 9 O -0.96 -21.02 16.75 -57.17 -0.96 -21.98 16 10 O -0.98 -19.31 17.28 -57.17 -0.99 -20.29 16 11 N -1.10 -22.54 5.99 -11.66 -0.07 -22.61 16 12 C 0.25 6.08 5.98 -5.19 -0.03 6.05 16 13 C -0.53 -14.18 9.27 -34.44 -0.32 -14.50 16 14 H 0.07 1.69 7.65 -52.49 -0.40 1.29 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.28 13.29 55.43 0.74 -24.55 16 17 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C -0.01 -0.16 9.52 -39.58 -0.38 -0.53 16 22 C -0.14 -1.91 8.71 -39.58 -0.34 -2.26 16 23 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 24 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 27 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.13 1.27 7.95 -52.49 -0.42 0.85 16 31 H 0.14 1.83 7.62 -52.49 -0.40 1.43 16 32 H 0.41 7.63 8.54 -34.47 -0.29 7.34 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.04 1.03 7.75 -51.93 -0.40 0.62 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.14 2.33 7.62 -52.49 -0.40 1.93 16 37 H 0.13 1.50 7.10 -52.49 -0.37 1.12 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -32.14 325.77 -9.40 -41.54 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.11 Total: 4.59 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -2.28 Total: -27.88 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.67 Total: -47.16 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.95 Total: -42.27 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 51.16 SS G_CDS: -0.62 Total: 50.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.14 -9.40 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057539136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.719 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds