Wall clock time and date at job start Tue Mar 31 2020 05:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50699 * 109.47337 * 295.00177 * 4 2 1 6 6 N 1.28623 * 124.70655 * 90.00111 * 5 4 2 7 7 C 1.33604 * 115.76962 * 180.02562 * 6 5 4 8 8 C 1.47113 * 123.15840 * 179.97438 * 7 6 5 9 9 O 1.21549 * 120.00303 * 179.97438 * 8 7 6 10 10 O 1.34804 * 119.99531 * 359.97438 * 8 7 6 11 11 C 1.45206 * 116.99572 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46806 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46668 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00276 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99840 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99581 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47024 * 89.99825 * 17 15 13 19 19 H 1.48499 * 109.46854 * 209.99619 * 17 15 13 20 20 H 1.48503 * 109.47067 * 329.99899 * 17 15 13 21 21 C 1.35296 * 113.68969 * 359.97438 * 7 6 5 22 22 S 1.70766 * 124.70947 * 269.69991 * 5 4 2 23 23 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 1.09004 * 109.46881 * 174.99844 * 4 2 1 32 32 H 1.08998 * 109.47452 * 300.00313 * 11 10 8 33 33 H 1.08998 * 109.46977 * 60.00228 * 11 10 8 34 34 H 1.09000 * 109.47013 * 300.00086 * 12 11 10 35 35 H 1.09002 * 109.46655 * 60.00209 * 12 11 10 36 36 H 0.97000 * 119.99841 * 180.02562 * 16 15 13 37 37 H 1.07990 * 125.59367 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1889 6 7 0.5441 -2.6517 -1.6597 7 6 0.3721 -3.9679 -1.5082 8 6 -0.8219 -4.6834 -1.9845 9 8 -0.9187 -5.8833 -1.8165 10 8 -1.8085 -4.0081 -2.6072 11 6 -2.9570 -4.7786 -3.0498 12 6 -3.9642 -3.8481 -3.7287 13 6 -5.1564 -4.6476 -4.1874 14 1 -5.1923 -5.7127 -4.0120 15 6 -6.2014 -4.0194 -4.8312 16 7 -6.1579 -2.7224 -5.0443 17 14 -7.6796 -5.0102 -5.3992 18 1 -8.6956 -5.0482 -4.3169 19 1 -8.2662 -4.3757 -6.6069 20 1 -7.2519 -6.3944 -5.7254 21 6 1.3989 -4.5811 -0.8757 22 16 2.5869 -3.4131 -0.4925 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6055 -0.2618 -2.1370 31 1 3.1264 -0.6443 -1.2951 32 1 -2.6320 -5.5412 -3.7575 33 1 -3.4266 -5.2569 -2.1904 34 1 -4.2891 -3.0858 -3.0206 35 1 -3.4947 -3.3695 -4.5880 36 1 -6.8932 -2.2803 -5.4968 37 1 1.4602 -5.6361 -0.6536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058339604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:32 Heat of formation + Delta-G solvation = -69.556847 kcal Electronic energy + Delta-G solvation = -19282.497947 eV Core-core repulsion = 16151.015641 eV Total energy + Delta-G solvation = -3131.482306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57240 -39.17284 -36.62157 -36.01904 -33.30169 -31.38200 -30.23541 -28.04970 -27.26671 -26.19208 -24.46870 -22.05623 -20.85771 -20.39827 -19.88311 -18.76651 -16.69959 -16.40150 -16.09161 -15.91464 -15.55913 -15.07244 -14.56509 -14.39467 -14.09510 -13.79268 -13.03610 -12.88074 -12.56487 -12.39229 -12.34614 -12.12267 -12.07965 -11.34767 -11.21166 -11.12648 -11.01650 -10.94558 -10.74171 -10.71788 -10.41138 -9.88785 -9.80252 -9.62227 -9.61485 -9.26769 -9.07843 -8.40951 -6.06821 -4.11241 0.30512 1.00479 1.37051 1.82704 3.16545 3.26726 3.30742 3.36663 3.41144 3.86595 4.41747 4.54803 4.61879 4.67409 4.95991 5.04211 5.19901 5.25336 5.29494 5.35262 5.47814 5.59143 5.68407 5.75912 5.80920 5.93845 6.09011 6.10137 6.11673 6.30655 6.66516 6.89690 7.34253 7.60530 7.67617 7.90062 8.18388 8.28256 8.94273 9.52728 11.04671 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.003485 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.163423 B = 8033.416545 C = 9196.299510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.041 4.041 5 C 0.032 3.968 6 N -0.414 5.414 7 C 0.037 3.963 8 C 0.536 3.464 9 O -0.510 6.510 10 O -0.332 6.332 11 C 0.073 3.927 12 C 0.026 3.974 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.226 4.226 22 S 0.201 5.799 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.525 5.082 11.516 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.082 4.082 5 C -0.249 4.249 6 N -0.128 5.128 7 C -0.097 4.097 8 C 0.377 3.623 9 O -0.400 6.400 10 O -0.247 6.247 11 C 0.001 3.999 12 C -0.011 4.011 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.367 4.367 22 S 0.459 5.541 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 21.906 5.192 11.661 25.353 hybrid contribution -1.785 -1.237 -0.680 2.275 sum 20.121 3.955 10.981 23.262 Atomic orbital electron populations 1.21871 0.93986 1.02880 1.02002 1.21125 0.97165 0.96120 0.96581 1.21830 1.00742 0.95346 1.02444 1.20455 1.01189 0.85523 1.00991 1.27227 0.93824 1.02130 1.01689 1.67048 1.18431 1.10062 1.17225 1.19549 0.96167 0.89102 1.04878 1.19835 0.82262 0.84759 0.75413 1.90840 1.79463 1.14923 1.54787 1.86723 1.28695 1.42598 1.66652 1.23740 0.82377 0.95513 0.98308 1.19162 0.91209 0.94780 0.95995 1.20979 1.02430 0.94623 1.38405 0.92259 1.24985 0.98506 0.94989 0.95674 1.69983 1.32346 1.08609 1.41802 0.86471 0.82443 0.80136 0.78258 1.20492 1.21052 1.19732 1.26608 0.98086 1.07080 1.04928 1.82754 1.20725 0.97196 1.53442 0.91941 0.92077 0.92824 0.91114 0.92266 0.92612 0.92159 0.88171 0.89466 0.92163 0.92178 0.95267 0.95253 0.92733 0.79164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.99 37.16 0.33 -1.25 16 2 C -0.09 -0.71 2.91 -90.62 -0.26 -0.98 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.57 16 4 C -0.04 -0.34 5.26 -27.89 -0.15 -0.49 16 5 C 0.03 0.36 5.84 -13.62 -0.08 0.28 16 6 N -0.41 -6.38 9.82 -8.53 -0.08 -6.46 16 7 C 0.04 0.59 6.71 -84.54 -0.57 0.02 16 8 C 0.54 10.61 7.94 34.33 0.27 10.88 16 9 O -0.51 -10.65 16.50 -19.30 -0.32 -10.97 16 10 O -0.33 -7.40 10.16 -40.78 -0.41 -7.82 16 11 C 0.07 1.72 5.42 37.16 0.20 1.92 16 12 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 13 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 14 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.23 -2.75 10.62 29.68 0.32 -2.44 16 22 S 0.20 1.76 22.92 -107.50 -2.46 -0.70 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.80 6.80 -51.93 -0.35 0.44 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.19 2.02 8.03 -52.49 -0.42 1.60 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -32.90 334.92 -8.06 -40.96 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -5.39 Total: -4.77 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.15 Total: -5.89 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.65 Total: -32.59 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.73 Total: -18.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.46 Total: -0.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.90 -8.06 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058339604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.598 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds