Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47290 * 2 1 4 4 N 1.29021 * 124.91591 * 89.99639 * 3 2 1 5 5 C 1.31780 * 117.12468 * 180.02562 * 4 3 2 6 6 C 1.50706 * 122.75241 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46817 * 305.02334 * 6 5 4 8 8 O 1.20828 * 120.00000 * 359.97438 * 7 6 5 9 9 O 1.34231 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.45196 * 117.00262 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47378 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47248 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47208 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99510 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00228 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00020 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99791 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47405 * 90.00014 * 17 15 13 19 19 H 1.48503 * 109.46762 * 210.00246 * 17 15 13 20 20 H 1.48500 * 109.46963 * 329.99581 * 17 15 13 21 21 C 1.33636 * 114.50070 * 0.23210 * 5 4 3 22 22 S 1.70973 * 124.91435 * 270.00490 * 3 2 1 23 23 H 1.08993 * 109.47079 * 60.00134 * 1 2 3 24 24 H 1.09002 * 109.46613 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46680 * 299.99672 * 1 2 3 26 26 H 1.08998 * 109.47124 * 239.99881 * 2 1 3 27 27 H 1.09005 * 109.47652 * 119.99620 * 2 1 3 28 28 H 1.09000 * 109.47318 * 65.01713 * 6 5 4 29 29 H 1.09000 * 109.47161 * 185.02344 * 6 5 4 30 30 H 1.09005 * 109.47388 * 300.00642 * 10 9 7 31 31 H 1.09000 * 109.47349 * 59.99884 * 10 9 7 32 32 H 1.09002 * 109.46566 * 300.00426 * 11 10 9 33 33 H 1.09000 * 109.47303 * 59.99454 * 11 10 9 34 34 H 1.08997 * 109.46869 * 299.99373 * 12 11 10 35 35 H 1.08991 * 109.47566 * 59.99904 * 12 11 10 36 36 H 0.97002 * 119.99990 * 179.97438 * 16 15 13 37 37 H 1.08004 * 126.03886 * 179.76370 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2785 2.1171 1.0580 5 6 2.7133 3.3482 0.8793 6 6 3.0392 4.2721 2.0246 7 6 1.8442 4.3831 2.9360 8 8 0.8317 3.7749 2.6814 9 8 1.9046 5.1577 4.0306 10 6 0.7159 5.2176 4.8622 11 6 0.9728 6.1430 6.0532 12 6 -0.2796 6.2056 6.9299 13 6 -0.0268 7.1177 8.1027 14 1 0.9316 7.6037 8.2120 15 6 -1.0187 7.3316 9.0360 16 7 -0.7979 8.1271 10.0597 17 14 -2.6764 6.4916 8.8464 18 1 -2.6490 5.1798 9.5419 19 1 -3.7351 7.3457 9.4421 20 1 -2.9628 6.2816 7.4045 21 6 2.8364 3.7123 -0.4006 22 16 2.3585 2.3435 -1.4020 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8935 -0.5138 0.8900 28 1 3.8862 3.8737 2.5830 29 1 3.2921 5.2582 1.6352 30 1 -0.1185 5.6031 4.2763 31 1 0.4747 4.2180 5.2238 32 1 1.8073 5.7578 6.6392 33 1 1.2139 7.1425 5.6914 34 1 -1.1142 6.5906 6.3440 35 1 -0.5201 5.2061 7.2917 36 1 -1.4960 8.2779 10.7161 37 1 3.1715 4.6748 -0.7581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064116714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -63.754251 kcal Electronic energy + Delta-G solvation = -18944.625520 eV Core-core repulsion = 15813.394833 eV Total energy + Delta-G solvation = -3131.230687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68676 -39.64833 -36.45740 -34.61110 -34.05313 -31.97538 -31.48718 -28.79619 -27.37567 -25.68487 -23.40045 -22.31256 -20.90452 -20.23393 -19.91451 -17.99914 -17.46568 -16.82844 -16.47258 -15.89167 -15.71445 -14.83124 -14.71811 -14.39274 -14.16679 -13.98450 -13.35701 -13.01902 -12.88997 -12.72162 -12.45949 -12.12248 -11.96626 -11.89367 -11.69864 -11.43541 -11.03027 -10.93321 -10.49521 -10.39155 -9.98725 -9.83375 -9.77548 -9.71096 -9.63782 -9.23831 -9.02431 -8.56017 -6.06335 -4.05221 0.42201 1.07494 1.42177 2.36388 2.39166 3.05216 3.30726 3.38122 3.41990 3.68758 4.39632 4.43828 4.69931 4.76801 4.88745 4.88797 4.97946 5.12472 5.22952 5.27138 5.36503 5.48698 5.49747 5.53921 5.64004 5.79953 5.90135 5.93617 6.38936 6.41329 6.71136 6.84248 7.22927 7.34066 7.52593 7.73717 7.96119 8.50672 8.98003 9.55355 11.06866 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.030188 B = 0.002768 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.305050 B =10112.199419 C =10782.740413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.058 3.942 4 N -0.448 5.448 5 C 0.082 3.918 6 C -0.039 4.039 7 C 0.460 3.540 8 O -0.495 6.495 9 O -0.358 6.358 10 C 0.068 3.932 11 C -0.101 4.101 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.253 4.253 22 S 0.113 5.887 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.284 -14.083 -25.882 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.222 4.222 4 N -0.161 5.161 5 C -0.050 4.050 6 C -0.079 4.079 7 C 0.301 3.699 8 O -0.382 6.382 9 O -0.275 6.275 10 C -0.005 4.005 11 C -0.139 4.139 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.392 4.392 22 S 0.368 5.632 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.722 -14.607 -26.338 31.091 hybrid contribution -0.846 0.284 0.771 1.179 sum 6.876 -14.323 -25.567 30.102 Atomic orbital electron populations 1.21776 0.93290 1.02554 1.03044 1.20235 0.96962 0.87392 1.04158 1.27085 1.02755 1.01793 0.90528 1.65987 1.13162 1.05548 1.31417 1.19563 1.00997 0.91413 0.93049 1.19824 0.96245 0.99850 0.92025 1.23158 0.89332 0.76635 0.80804 1.90682 1.32547 1.42559 1.72422 1.86478 1.43400 1.62601 1.35012 1.23463 0.84277 1.01511 0.91265 1.21555 1.01240 0.97996 0.93091 1.19520 0.92871 0.97214 0.95220 1.21062 1.01454 1.27244 1.06153 0.90783 1.25013 0.98651 0.94827 0.94922 1.69907 1.34082 1.37257 1.12821 0.86785 0.83990 0.79673 0.78910 1.20189 1.21281 1.18991 1.26764 1.12407 1.04499 0.95573 1.83890 1.60657 1.05580 1.13070 0.92471 0.91373 0.91503 0.89722 0.88688 0.85968 0.86041 0.91690 0.91581 0.91530 0.91536 0.96319 0.96717 0.92652 0.80275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.79 16 2 C -0.05 -0.36 6.52 -27.88 -0.18 -0.54 16 3 C 0.06 0.60 6.64 -13.46 -0.09 0.51 16 4 N -0.45 -5.92 9.68 -8.06 -0.08 -6.00 16 5 C 0.08 0.95 5.64 -84.22 -0.47 0.48 16 6 C -0.04 -0.41 6.31 -29.03 -0.18 -0.59 16 7 C 0.46 6.99 7.92 36.01 0.29 7.28 16 8 O -0.50 -9.13 15.20 -18.75 -0.28 -9.42 16 9 O -0.36 -5.87 10.22 -39.26 -0.40 -6.27 16 10 C 0.07 1.23 5.47 37.16 0.20 1.43 16 11 C -0.10 -2.05 5.53 -26.73 -0.15 -2.20 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 13 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 17 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 C -0.25 -2.30 11.07 29.12 0.32 -1.98 16 22 S 0.11 0.94 23.18 -107.50 -2.49 -1.55 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.12 0.87 8.03 -51.93 -0.42 0.46 16 30 H 0.06 1.16 8.13 -51.93 -0.42 0.74 16 31 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.18 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -34.53 333.18 -7.99 -42.52 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -5.42 Total: -4.18 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.44 Total: -10.20 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.70 Total: -33.18 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.69 Total: -15.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.53 -7.99 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064116714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.231 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds