Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46773 * 2 1 4 4 C 1.53001 * 109.47547 * 239.99825 * 2 1 3 5 5 C 1.50703 * 109.46871 * 119.99952 * 2 1 3 6 6 N 1.29393 * 124.70811 * 59.96034 * 5 2 1 7 7 C 1.30909 * 117.46490 * 179.73824 * 6 5 2 8 8 C 1.36759 * 113.93586 * 0.52882 * 7 6 5 9 9 C 1.46494 * 126.17962 * 179.78004 * 8 7 6 10 10 O 1.21621 * 119.99813 * 179.69236 * 9 8 7 11 11 O 1.34870 * 120.00290 * 359.69536 * 9 8 7 12 12 C 1.45206 * 117.00238 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47091 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.46999 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00004 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99557 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47022 * 90.00403 * 18 16 14 20 20 H 1.48509 * 109.46837 * 210.00168 * 18 16 14 21 21 H 1.48495 * 109.47280 * 330.00087 * 18 16 14 22 22 S 1.70922 * 124.70316 * 240.00123 * 5 2 1 23 23 H 1.08997 * 109.47371 * 300.00072 * 1 2 3 24 24 H 1.09003 * 109.46610 * 60.00686 * 1 2 3 25 25 H 1.08998 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46785 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47385 * 299.99835 * 3 2 1 28 28 H 1.09001 * 109.47177 * 60.00326 * 3 2 1 29 29 H 1.09003 * 109.46841 * 300.00463 * 4 2 1 30 30 H 1.09004 * 109.46870 * 59.99875 * 4 2 1 31 31 H 1.08998 * 109.47328 * 180.02562 * 4 2 1 32 32 H 1.08006 * 123.03312 * 180.34523 * 7 6 5 33 33 H 1.09001 * 109.47157 * 299.99664 * 12 11 9 34 34 H 1.09004 * 109.47122 * 59.99797 * 12 11 9 35 35 H 1.08992 * 109.47056 * 300.00206 * 13 12 11 36 36 H 1.09004 * 109.47006 * 60.00090 * 13 12 11 37 37 H 0.96999 * 119.99682 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.7758 -1.9439 1.5254 7 6 2.2909 -2.4201 2.6307 8 6 3.0346 -1.5121 3.3325 9 6 3.7248 -1.7557 4.6015 10 8 4.3627 -0.8639 5.1278 11 8 3.6529 -2.9690 5.1862 12 6 4.3619 -3.1387 6.4420 13 6 4.1652 -4.5686 6.9495 14 6 4.9015 -4.7448 8.2525 15 1 5.4541 -3.9194 8.6765 16 6 4.8697 -5.9599 8.9035 17 7 5.5118 -6.1135 10.0409 18 14 3.9132 -7.3873 8.1706 19 1 4.8020 -8.1710 7.2755 20 1 3.4147 -8.2617 9.2625 21 1 2.7627 -6.8640 7.3912 22 16 3.0190 0.0018 2.4307 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.1301 -0.7216 -1.2489 32 1 2.1395 -3.4375 2.9602 33 1 5.4244 -2.9505 6.2877 34 1 3.9714 -2.4354 7.1776 35 1 3.1027 -4.7564 7.1039 36 1 4.5554 -5.2721 6.2140 37 1 5.4891 -6.9682 10.4990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064223563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -62.972187 kcal Electronic energy + Delta-G solvation = -19188.998512 eV Core-core repulsion = 16057.801738 eV Total energy + Delta-G solvation = -3131.196774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38556 -39.67561 -37.05241 -36.20939 -33.34631 -31.16157 -30.18805 -27.89536 -27.67814 -26.39940 -25.14066 -22.47456 -21.36979 -20.67713 -19.43251 -17.98945 -17.38903 -16.76106 -16.18535 -15.89152 -15.19279 -15.16959 -14.72414 -14.23983 -14.07273 -13.98230 -13.39973 -13.23445 -12.75003 -12.60785 -12.50230 -12.11336 -12.05168 -11.68436 -11.59823 -11.45947 -11.42680 -11.31104 -10.84081 -10.73314 -10.20277 -9.97653 -9.78329 -9.77108 -9.65843 -9.37670 -9.12320 -8.64186 -6.14741 -4.16280 -0.02159 0.85268 1.43620 2.22376 2.99026 3.11243 3.26989 3.34493 3.38579 3.61088 4.28058 4.37044 4.42840 4.55933 4.84965 4.89799 5.10990 5.18057 5.18767 5.19363 5.32019 5.41776 5.45896 5.49397 5.63993 5.79655 5.86710 5.89320 5.92429 5.96085 6.39730 6.63933 7.11953 7.18161 7.38019 7.59360 7.96438 8.37342 8.86709 9.44531 10.97761 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.036876 B = 0.003137 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.109292 B = 8922.194852 C = 9479.630034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 C -0.158 4.158 4 C -0.135 4.135 5 C 0.054 3.946 6 N -0.478 5.478 7 C 0.123 3.877 8 C -0.295 4.295 9 C 0.540 3.460 10 O -0.509 6.509 11 O -0.350 6.350 12 C 0.084 3.916 13 C -0.009 4.009 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.263 1.263 22 S 0.234 5.766 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.193 0.807 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.025 0.975 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 13.733 -23.747 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 C -0.216 4.216 4 C -0.194 4.194 5 C -0.220 4.220 6 N -0.191 5.191 7 C -0.036 4.036 8 C -0.417 4.417 9 C 0.383 3.617 10 O -0.400 6.400 11 O -0.266 6.266 12 C 0.012 3.988 13 C -0.046 4.046 14 C -0.566 4.566 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.708 3.292 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.187 1.187 22 S 0.494 5.506 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.210 0.790 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.306 14.583 -23.610 29.270 hybrid contribution -0.390 -1.781 0.349 1.856 sum -9.697 12.802 -23.261 28.266 Atomic orbital electron populations 1.21854 0.91867 1.03353 1.02290 1.19326 0.96913 0.94023 0.89335 1.22075 1.01908 0.94130 1.03520 1.21855 1.01306 1.01188 0.95016 1.27695 0.99306 0.93886 1.01070 1.66045 1.23779 1.11601 1.17697 1.22747 0.91586 1.01143 0.88078 1.25240 1.13549 0.99960 1.02927 1.19314 0.77817 0.81717 0.82851 1.90887 1.40071 1.44877 1.64159 1.86563 1.68807 1.31588 1.39645 1.23494 0.95288 1.01075 0.78991 1.19639 0.98458 0.89707 0.96837 1.20822 1.32299 0.99334 1.04158 0.90600 1.24934 0.94930 0.98545 0.94567 1.69893 1.42272 1.25263 1.15995 0.86750 0.81074 0.82302 0.79081 1.20024 1.21146 1.18728 1.83980 1.43863 1.10529 1.12227 0.92341 0.91403 0.91215 0.91614 0.90322 0.91610 0.91217 0.91395 0.92345 0.78999 0.91416 0.91397 0.95267 0.95700 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 8.45 37.16 0.31 -0.57 16 2 C 0.01 0.06 0.99 -155.66 -0.15 -0.10 16 3 C -0.16 -0.87 7.53 37.16 0.28 -0.59 16 4 C -0.13 -0.88 8.45 37.16 0.31 -0.57 16 5 C 0.05 0.56 5.77 -13.30 -0.08 0.48 16 6 N -0.48 -5.82 10.48 -11.26 -0.12 -5.94 16 7 C 0.12 1.62 11.20 -18.48 -0.21 1.41 16 8 C -0.29 -4.29 6.51 -36.79 -0.24 -4.53 16 9 C 0.54 9.71 7.92 34.06 0.27 9.98 16 10 O -0.51 -10.27 16.76 -19.36 -0.32 -10.59 16 11 O -0.35 -6.73 10.02 -40.96 -0.41 -7.14 16 12 C 0.08 1.80 5.42 37.16 0.20 2.00 16 13 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 14 C -0.53 -14.98 9.66 -34.44 -0.33 -15.31 16 15 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 18 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 22 S 0.23 2.65 21.36 -107.50 -2.30 0.35 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.36 7.91 -51.93 -0.41 -0.05 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.36 7.91 -51.93 -0.41 -0.05 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.19 2.29 8.06 -52.48 -0.42 1.86 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 35 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 36 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -32.05 330.82 -7.31 -39.36 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -5.40 Total: -5.05 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 0.15 Total: -6.12 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.66 Total: -32.48 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.74 Total: -17.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.30 Total: 0.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.05 -7.31 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064223563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.612 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds