Wall clock time and date at job start Tue Mar 31 2020 05:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.78599 * 2 1 4 4 C 1.41388 * 106.83843 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.57799 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47107 * 145.02197 * 5 4 3 7 7 C 1.52998 * 109.47050 * 265.02177 * 5 4 3 8 8 N 1.46498 * 109.47363 * 25.02386 * 5 4 3 9 9 C 1.34781 * 120.00203 * 154.99942 * 8 5 4 10 10 O 1.21285 * 120.00023 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99915 * 179.97438 * 9 8 5 12 12 S 1.81001 * 109.47009 * 180.02562 * 11 9 8 13 13 C 1.76193 * 100.00044 * 180.02562 * 12 11 9 14 14 H 1.07997 * 120.00128 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00294 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00154 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99721 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47079 * 90.00293 * 17 15 13 19 19 H 1.48498 * 109.47129 * 210.00443 * 17 15 13 20 20 H 1.48504 * 109.47126 * 330.00397 * 17 15 13 21 21 C 1.34506 * 106.83998 * 359.97438 * 4 3 2 22 22 C 1.50707 * 125.79149 * 180.02562 * 21 4 3 23 23 O 1.34304 * 125.79068 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47225 * 90.00307 * 1 2 3 25 25 H 1.09000 * 109.47407 * 210.00312 * 1 2 3 26 26 H 1.09004 * 109.47697 * 330.00270 * 1 2 3 27 27 H 1.08001 * 126.58408 * 359.77293 * 3 2 1 28 28 H 1.09005 * 109.46913 * 180.02562 * 7 5 4 29 29 H 1.08997 * 109.47002 * 300.00139 * 7 5 4 30 30 H 1.08999 * 109.47325 * 60.00571 * 7 5 4 31 31 H 0.96997 * 120.00172 * 335.00126 * 8 5 4 32 32 H 1.08999 * 109.47211 * 300.00275 * 11 9 8 33 33 H 1.08997 * 109.47060 * 60.00154 * 11 9 8 34 34 H 0.97002 * 119.99941 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.47115 * 179.97438 * 22 21 4 36 36 H 1.09001 * 109.46876 * 299.98438 * 22 21 4 37 37 H 1.09004 * 109.46931 * 59.98031 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8731 1.4851 -0.0003 6 1 5.6494 0.9962 0.5883 7 6 5.3641 1.6716 -1.4373 8 7 4.5674 2.7929 0.5849 9 6 5.5481 3.5234 1.1518 10 8 6.6837 3.0982 1.1770 11 6 5.2337 4.8689 1.7532 12 16 6.7471 5.5962 2.4289 13 6 6.1059 7.1156 3.0493 14 1 5.0554 7.3420 2.9426 15 6 6.9512 8.0220 3.6742 16 7 6.4723 9.1572 4.1373 17 14 8.7685 7.6307 3.8581 18 1 9.5064 8.1383 2.6736 19 1 9.2935 8.2822 5.0850 20 1 8.9503 6.1605 3.9620 21 6 3.5813 -0.7120 -0.0004 22 6 4.7706 -1.6378 -0.0003 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3635 0.8900 0.5138 27 1 1.9664 2.1205 -0.0034 28 1 6.2629 2.2882 -1.4370 29 1 5.5915 0.6985 -1.8727 30 1 4.5879 2.1605 -2.0259 31 1 3.6593 3.1331 0.5644 32 1 4.8279 5.5252 0.9833 33 1 4.5007 4.7480 2.5508 34 1 7.0629 9.7905 4.5743 35 1 4.4260 -2.6719 0.0004 36 1 5.3727 -1.4558 -0.8905 37 1 5.3731 -1.4551 0.8895 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067078151.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:24 Heat of formation + Delta-G solvation = -38.006506 kcal Electronic energy + Delta-G solvation = -19386.565324 eV Core-core repulsion = 16256.451143 eV Total energy + Delta-G solvation = -3130.114181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.89236 -39.37514 -36.03728 -33.27558 -32.90467 -32.42976 -30.69884 -29.73465 -28.52115 -25.60937 -25.12515 -23.45759 -21.72939 -20.09460 -19.59460 -17.78677 -16.89260 -16.56836 -16.37603 -15.56590 -15.05033 -14.92759 -14.54231 -14.02547 -13.74093 -13.64149 -13.45684 -13.42304 -13.07355 -12.95252 -12.91639 -12.78146 -12.61960 -12.06055 -11.95984 -11.89588 -11.25510 -11.18600 -11.00025 -10.59566 -9.88070 -9.83458 -9.49146 -9.02400 -8.97202 -8.48953 -8.37875 -6.90521 -6.28142 -3.99614 1.46627 2.30786 2.65529 2.79813 3.00212 3.32442 3.35983 3.51398 3.68298 4.33951 4.35628 4.49972 4.68705 4.76085 4.91710 5.04574 5.10959 5.12106 5.16054 5.18544 5.25120 5.32152 5.37004 5.47275 5.49734 5.62123 5.76521 5.78480 5.94425 6.00765 6.03877 6.13115 6.31453 6.60336 6.95906 7.65682 7.95000 8.42573 8.51611 9.18124 10.81164 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.030413 B = 0.003367 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.449600 B = 8314.216127 C = 8901.211260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.200 4.200 4 C -0.180 4.180 5 C 0.217 3.783 6 H 0.094 0.906 7 C -0.157 4.157 8 N -0.728 5.728 9 C 0.533 3.467 10 O -0.520 6.520 11 C -0.124 4.124 12 S -0.141 6.141 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.881 5.881 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.005 4.005 22 C -0.076 4.076 23 O -0.174 6.174 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.271 0.729 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 -20.498 -10.642 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.220 4.220 4 C -0.182 4.182 5 C 0.112 3.888 6 H 0.112 0.888 7 C -0.215 4.215 8 N -0.383 5.383 9 C 0.319 3.681 10 O -0.395 6.395 11 C -0.275 4.275 12 S 0.085 5.915 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.518 5.518 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.159 1.159 21 C -0.056 4.056 22 C -0.132 4.132 23 O -0.071 6.071 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.165 0.835 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.233 0.767 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.639 -21.327 -10.501 25.293 hybrid contribution -1.111 1.068 0.143 1.548 sum -9.750 -20.259 -10.358 24.755 Atomic orbital electron populations 1.20297 0.85046 1.04106 1.03443 1.22333 0.93927 0.84003 1.06316 1.21316 0.91894 0.99481 1.09260 1.20221 0.95351 0.93320 1.09259 1.19051 0.92642 0.82400 0.94755 0.88791 1.22139 1.01911 1.02183 0.95292 1.46007 1.11966 1.19284 1.61013 1.20271 0.84865 0.86021 0.76979 1.90689 1.20701 1.71240 1.56851 1.23280 1.05080 0.95589 1.03520 1.84765 1.10150 1.21948 1.74590 1.22325 0.99135 1.01741 1.43707 0.89411 1.24714 0.99133 0.93863 0.93600 1.69937 1.36308 1.08221 1.37294 0.86732 0.84773 0.81678 0.78658 1.19204 1.19953 1.15893 1.22079 0.83323 0.93851 1.06314 1.20362 0.91334 0.97548 1.03985 1.83963 1.16185 1.34992 1.71962 0.90169 0.90649 0.89234 0.83499 0.91314 0.91908 0.92386 0.76719 0.88512 0.88497 0.91947 0.90567 0.89509 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.42 36.00 0.37 -0.07 16 2 C -0.02 -0.16 7.32 -35.63 -0.26 -0.42 16 3 C -0.20 -2.08 9.97 -39.70 -0.40 -2.47 16 4 C -0.18 -2.04 5.26 -104.75 -0.55 -2.59 16 5 C 0.22 2.70 2.78 -69.09 -0.19 2.51 16 6 H 0.09 1.29 7.45 -51.93 -0.39 0.91 16 7 C -0.16 -1.78 9.47 37.16 0.35 -1.43 16 8 N -0.73 -9.96 5.05 -54.93 -0.28 -10.24 16 9 C 0.53 9.62 7.81 -10.98 -0.09 9.54 16 10 O -0.52 -11.19 15.53 5.55 0.09 -11.10 16 11 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 12 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 13 C -0.52 -15.12 10.04 30.94 0.31 -14.80 16 14 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 15 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 16 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 17 Si 0.86 21.87 27.74 -169.99 -4.71 17.16 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.23 -5.99 6.74 56.52 0.38 -5.61 16 21 C -0.01 -0.06 7.32 -35.62 -0.26 -0.32 16 22 C -0.08 -0.58 10.03 36.01 0.36 -0.21 16 23 O -0.17 -1.94 10.65 5.70 0.06 -1.88 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.15 1.27 7.25 -52.49 -0.38 0.89 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.40 4.49 7.12 -40.82 -0.29 4.20 16 32 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 34 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.55 8.06 -51.93 -0.42 0.13 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -34.63 332.06 -6.56 -41.19 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.28 Total: 1.16 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.22 Total: -9.77 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.50 Total: -36.18 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.15 Total: -12.98 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.63 -6.56 -41.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067078151.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.182 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds