Wall clock time and date at job start Tue Mar 31 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 S 1.76205 * 120.00126 * 180.26088 * 6 5 4 8 8 O 1.42105 * 106.40035 * 23.75208 * 7 6 5 9 9 O 1.42097 * 106.40122 * 156.67596 * 7 6 5 10 10 N 1.65602 * 107.21590 * 270.21445 * 7 6 5 11 11 C 1.46506 * 120.00166 * 64.99795 * 10 7 6 12 12 C 1.52991 * 109.46887 * 165.00118 * 11 10 7 13 13 C 1.53005 * 109.46963 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47160 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00215 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00022 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99824 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00143 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47104 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47191 * 119.99805 * 18 16 14 21 21 H 1.48501 * 109.47107 * 239.99915 * 18 16 14 22 22 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 23 23 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 24 24 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 25 25 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 26 26 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 28 28 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 29 29 H 0.97002 * 120.00147 * 245.00129 * 10 7 6 30 30 H 1.08999 * 109.47140 * 285.00074 * 11 10 7 31 31 H 1.08999 * 109.46837 * 44.99571 * 11 10 7 32 32 H 1.08999 * 109.47195 * 299.99923 * 12 11 10 33 33 H 1.08999 * 109.47829 * 60.00061 * 12 11 10 34 34 H 1.09008 * 109.46551 * 299.99773 * 13 12 11 35 35 H 1.08994 * 109.47494 * 59.99452 * 13 12 11 36 36 H 0.96995 * 119.99490 * 179.97438 * 17 16 14 37 37 H 1.08001 * 119.99700 * 359.96970 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 16 4.4616 -2.7230 -0.0006 8 8 5.7446 -2.4457 0.5439 9 8 3.5799 -3.6953 0.5438 10 7 4.7067 -3.1474 -1.5824 11 6 5.5549 -2.3167 -2.4408 12 6 5.9207 -3.0970 -3.7048 13 6 6.8071 -2.2297 -4.6010 14 6 7.1669 -2.9980 -5.8464 15 1 6.8005 -4.0045 -5.9848 16 6 7.9640 -2.4161 -6.8094 17 7 8.4098 -1.1903 -6.6411 18 14 8.4106 -3.3688 -8.3528 19 1 7.7872 -4.7157 -8.3010 20 1 7.9127 -2.6391 -9.5464 21 1 9.8865 -3.5089 -8.4383 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1326 0.0010 28 1 5.3517 -0.0001 -0.0091 29 1 4.2887 -3.9461 -1.9407 30 1 5.0158 -1.4104 -2.7165 31 1 6.4644 -2.0489 -1.9030 32 1 6.4599 -4.0033 -3.4291 33 1 5.0112 -3.3648 -4.2426 34 1 6.2682 -1.3231 -4.8768 35 1 7.7165 -1.9622 -4.0631 36 1 8.9708 -0.7811 -7.3184 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940778.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:55 Heat of formation + Delta-G solvation = -72.332191 kcal Electronic energy + Delta-G solvation = -19580.671706 eV Core-core repulsion = 16449.069052 eV Total energy + Delta-G solvation = -3131.602654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51589 -37.21616 -35.98281 -35.80139 -33.25510 -33.13469 -31.44365 -30.86569 -27.27152 -26.39576 -23.48791 -23.00637 -22.01772 -20.59097 -19.20932 -17.75847 -17.24588 -16.57732 -16.18647 -16.03719 -15.34791 -14.65838 -14.52940 -14.46895 -14.23483 -14.10598 -13.44739 -12.62755 -12.57577 -12.52232 -12.38566 -12.34697 -12.16163 -12.02117 -11.93495 -11.54517 -11.44582 -10.97107 -10.81310 -10.76310 -10.53441 -9.94189 -9.57373 -9.46488 -9.25926 -9.09626 -9.01033 -8.38652 -6.03666 -4.06085 0.38451 0.69274 1.07190 3.00756 3.29388 3.34459 3.37176 3.41118 3.79537 4.26190 4.43535 4.54273 4.64921 4.75826 4.98716 5.03488 5.26428 5.30200 5.32610 5.34503 5.46617 5.62345 5.65485 5.79261 5.85990 5.94122 6.04310 6.08335 6.17654 6.55978 6.63146 6.75413 6.94671 7.14854 7.61755 7.74189 7.95398 8.37265 9.00721 9.58295 11.07697 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.003675 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.348856 B = 7618.126744 C = 8161.461637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.111 4.111 3 C -0.068 4.068 4 C -0.136 4.136 5 C -0.024 4.024 6 C -0.669 4.669 7 S 2.694 3.306 8 O -0.957 6.957 9 O -0.968 6.968 10 N -1.113 6.113 11 C 0.112 3.888 12 C -0.116 4.116 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.021 4.021 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.417 0.583 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 3.949 14.072 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.112 4.112 3 C -0.086 4.086 4 C -0.155 4.155 5 C -0.043 4.043 6 C -0.756 4.756 7 S 2.784 3.216 8 O -0.947 6.947 9 O -0.958 6.958 10 N -0.874 5.874 11 C -0.013 4.013 12 C -0.155 4.155 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.041 4.041 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.252 0.748 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.017 3.798 14.803 20.737 hybrid contribution -0.213 -0.009 -1.446 1.462 sum -14.230 3.789 13.356 19.881 Atomic orbital electron populations 1.20816 0.90501 1.03099 1.02767 1.20052 0.96570 0.93163 1.01396 1.21363 0.94484 0.97766 0.94984 1.21317 0.94422 0.98454 1.01263 1.21017 1.00559 0.91160 0.91583 1.31038 1.06318 1.20602 1.17603 1.01819 0.73739 0.73380 0.72706 1.93591 1.39086 1.85431 1.76553 1.93565 1.67041 1.58387 1.76779 1.55486 1.63374 1.37614 1.30925 1.21610 0.93208 0.93432 0.93017 1.21850 1.00702 0.99500 0.93434 1.19088 0.94269 0.94811 0.93554 1.21253 1.30701 1.00531 1.03434 0.92547 1.25027 0.96005 0.94961 0.98484 1.69970 1.35105 1.13391 1.34916 0.86529 0.78200 0.80099 0.83114 1.19739 1.21047 1.20990 1.20799 0.91937 0.98762 0.92574 0.90787 0.91156 0.91344 0.85351 0.84875 0.83996 0.74774 0.92149 0.90467 0.92325 0.92577 0.96322 0.96135 0.93013 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.11 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.07 -0.63 9.70 -39.58 -0.38 -1.02 16 4 C -0.14 -1.38 10.05 -39.58 -0.40 -1.78 16 5 C -0.02 -0.29 9.52 -39.58 -0.38 -0.66 16 6 C -0.67 -8.43 5.95 -39.59 -0.24 -8.67 16 7 S 2.69 37.31 5.74 -107.50 -0.62 36.69 16 8 O -0.96 -15.92 16.76 -57.17 -0.96 -16.88 16 9 O -0.97 -14.88 17.28 -57.17 -0.99 -15.87 16 10 N -1.11 -14.99 6.00 -10.61 -0.06 -15.05 16 11 C 0.11 1.78 6.22 -4.04 -0.03 1.76 16 12 C -0.12 -2.21 5.29 -26.73 -0.14 -2.35 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 C -0.02 -0.25 9.18 -39.58 -0.36 -0.61 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 25 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 26 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 28 H 0.14 1.61 7.62 -52.48 -0.40 1.21 16 29 H 0.42 4.88 8.65 -34.47 -0.30 4.58 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.14 1.40 7.62 -52.49 -0.40 1.00 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -33.83 330.10 -9.93 -43.76 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.26 Total: 0.03 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -2.73 Total: -28.32 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.67 Total: -40.70 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.95 Total: -32.74 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 37.31 SS G_CDS: -0.62 Total: 36.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.83 -9.93 -43.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940778.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.575 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds