Wall clock time and date at job start Tue Mar 31 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00167 * 2 1 4 4 C 1.53008 * 109.47329 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47180 * 64.99607 * 4 3 2 6 6 C 1.46496 * 120.00332 * 262.28900 * 5 4 3 7 7 C 1.50707 * 109.46893 * 265.01712 * 6 5 4 8 8 H 1.07996 * 119.99824 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99964 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99838 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99986 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46857 * 120.00140 * 11 9 7 14 14 H 1.48504 * 109.46983 * 239.99675 * 11 9 7 15 15 C 1.34781 * 119.99557 * 82.28704 * 5 4 3 16 16 O 1.21703 * 119.99886 * 182.60687 * 15 5 4 17 17 C 1.46575 * 120.00396 * 2.60038 * 15 5 4 18 18 S 1.75837 * 125.45659 * 351.40342 * 17 15 5 19 19 C 1.70614 * 91.56326 * 179.97438 * 18 17 15 20 20 C 1.33826 * 110.95482 * 359.72923 * 19 18 17 21 21 C 1.36645 * 125.46209 * 171.39751 * 17 15 5 22 22 C 1.50706 * 123.35201 * 0.02562 * 21 17 15 23 23 H 1.08998 * 109.47067 * 300.00457 * 1 2 3 24 24 H 1.09000 * 109.47075 * 59.99810 * 1 2 3 25 25 H 1.08992 * 109.47462 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47390 * 59.99825 * 3 2 1 27 27 H 1.08999 * 109.47137 * 299.99970 * 3 2 1 28 28 H 1.09005 * 109.46729 * 305.00150 * 4 3 2 29 29 H 1.09002 * 109.47217 * 184.99990 * 4 3 2 30 30 H 1.08992 * 109.47098 * 25.01694 * 6 5 4 31 31 H 1.09001 * 109.47371 * 145.01702 * 6 5 4 32 32 H 0.97009 * 119.99826 * 180.02562 * 10 9 7 33 33 H 1.07998 * 124.52271 * 180.02562 * 19 18 17 34 34 H 1.08000 * 122.44946 * 180.25457 * 20 19 18 35 35 H 1.08998 * 109.46597 * 89.99373 * 22 21 17 36 36 H 1.08993 * 109.47345 * 210.00066 * 22 21 17 37 37 H 1.09006 * 109.46899 * 330.00170 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2680 -0.8705 -1.2961 7 6 5.7445 -1.0889 -1.0878 8 1 6.3996 -0.2434 -0.9383 9 6 6.2591 -2.3680 -1.0889 10 7 5.4614 -3.3975 -1.2714 11 14 8.0892 -2.6387 -0.8299 12 1 8.7627 -1.3278 -0.6485 13 1 8.2995 -3.4755 0.3787 14 1 8.6601 -3.3283 -2.0148 15 6 4.1117 1.3138 -2.3646 16 8 4.4315 0.7905 -3.4158 17 6 3.8745 2.7591 -2.3078 18 16 3.2055 3.6298 -0.9344 19 6 3.3117 5.1161 -1.7654 20 6 3.8246 4.9445 -2.9895 21 6 4.1378 3.6458 -3.3136 22 6 4.7199 3.2412 -4.6436 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9786 2.1765 0.0889 30 1 3.7109 -1.3788 -0.5092 31 1 3.9747 -1.2719 -2.2662 32 1 5.8234 -4.2976 -1.2719 33 1 3.0099 6.0690 -1.3563 34 1 3.9774 5.7657 -3.6741 35 1 3.9126 3.0030 -5.3361 36 1 5.3131 4.0625 -5.0455 37 1 5.3550 2.3653 -4.5108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:56 Heat of formation + Delta-G solvation = -39.287082 kcal Electronic energy + Delta-G solvation = -20717.708852 eV Core-core repulsion = 17587.539141 eV Total energy + Delta-G solvation = -3130.169711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.39282 -38.00196 -37.17067 -34.87671 -32.73479 -30.76102 -29.67047 -28.48424 -26.58036 -25.97306 -23.55903 -22.82180 -22.67740 -19.93112 -18.15862 -17.55916 -16.44000 -16.34563 -15.86326 -15.30077 -15.15958 -14.87380 -14.70667 -14.11688 -13.95799 -13.27040 -13.16904 -12.93923 -12.51029 -12.17160 -12.10318 -11.91303 -11.83769 -11.67491 -11.37007 -11.22946 -10.93147 -10.85404 -10.52383 -10.33832 -10.06791 -9.57648 -9.49328 -8.98394 -8.55915 -8.36924 -8.17126 -7.63373 -5.97626 -4.01961 0.79274 1.70856 2.11757 2.63632 3.33901 3.41172 3.45360 3.78049 3.91212 3.97891 4.50206 4.94291 5.02427 5.20250 5.35678 5.37569 5.39564 5.42711 5.49722 5.51819 5.52908 5.56965 5.75246 5.82269 5.99244 6.11454 6.12821 6.22973 6.54490 6.76499 7.18535 7.35132 7.53133 7.59392 7.99374 8.29063 8.39880 8.92559 9.08298 9.62228 11.10385 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.006660 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.348904 B = 4203.009222 C = 5365.227375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.037 3.963 4 C 0.100 3.900 5 N -0.582 5.582 6 C 0.254 3.746 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.575 3.425 16 O -0.521 6.521 17 C -0.254 4.254 18 S 0.203 5.797 19 C -0.274 4.274 20 C -0.145 4.145 21 C -0.036 4.036 22 C -0.100 4.100 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 15.778 2.701 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.042 4.042 4 C -0.027 4.027 5 N -0.313 5.313 6 C 0.135 3.865 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.362 3.638 16 O -0.400 6.400 17 C -0.374 4.374 18 S 0.473 5.527 19 C -0.410 4.410 20 C -0.176 4.176 21 C -0.050 4.050 22 C -0.158 4.158 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.176 0.824 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.791 14.729 3.592 17.525 hybrid contribution 1.202 0.803 -1.115 1.826 sum -7.589 15.532 2.477 17.463 Atomic orbital electron populations 1.22713 0.81787 1.02682 0.99310 1.88071 1.18930 1.26735 1.95184 1.23363 0.94809 0.85583 1.00415 1.21847 0.91781 0.98551 0.90525 1.48060 1.64256 1.11957 1.07027 1.19329 0.95786 0.72244 0.99091 1.21506 0.93177 0.92442 1.49363 0.92488 1.24910 0.98023 0.95850 0.95229 1.69960 1.34794 0.98565 1.49903 0.86471 0.85308 0.78128 0.77677 1.19843 1.21001 1.20917 1.16901 0.78658 0.83582 0.84682 1.90761 1.47895 1.72148 1.29174 1.24885 1.14688 0.98773 0.99084 1.83629 1.59041 0.94536 1.15523 1.25819 1.08151 1.06236 1.00832 1.19841 1.03804 0.96826 0.97117 1.19480 0.97323 0.91617 0.96609 1.20655 1.01001 1.02548 0.91609 0.94499 0.94482 0.89660 0.92301 0.92784 0.87488 0.89777 0.93785 0.94052 0.92849 0.82438 0.84775 0.90936 0.92242 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.32 10.62 -35.23 -0.37 -6.70 16 3 C 0.04 0.54 4.80 37.16 0.18 0.72 16 4 C 0.10 1.70 5.32 -4.04 -0.02 1.68 16 5 N -0.58 -12.93 2.44 -176.64 -0.43 -13.36 16 6 C 0.25 6.83 5.10 -5.19 -0.03 6.81 16 7 C -0.53 -15.20 9.35 -34.44 -0.32 -15.53 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 11 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 15 C 0.58 12.81 7.48 -12.90 -0.10 12.72 16 16 O -0.52 -13.41 14.03 5.19 0.07 -13.34 16 17 C -0.25 -4.49 6.08 -36.80 -0.22 -4.72 16 18 S 0.20 2.63 15.44 -107.50 -1.66 0.97 16 19 C -0.27 -3.20 10.92 29.18 0.32 -2.89 16 20 C -0.14 -1.87 9.97 -41.41 -0.41 -2.28 16 21 C -0.04 -0.57 5.90 -105.47 -0.62 -1.20 16 22 C -0.10 -1.53 9.45 36.01 0.34 -1.19 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.79 6.22 -49.38 -0.31 0.48 16 28 H 0.11 1.85 8.01 -51.93 -0.42 1.44 16 29 H 0.09 1.26 4.47 -22.21 -0.10 1.16 16 30 H 0.04 1.22 8.01 -51.93 -0.42 0.80 16 31 H 0.04 1.25 7.54 -51.93 -0.39 0.86 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.72 6.24 -51.93 -0.32 1.40 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -33.90 319.09 -6.62 -40.52 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.88 Total: -1.20 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 0.13 Total: -2.67 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.31 Total: -39.58 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.30 Total: -20.04 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.66 Total: 0.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.90 -6.62 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.231 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds