Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99762 * 2 1 4 4 C 1.52996 * 109.47060 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47025 * 65.00017 * 4 3 2 6 6 C 1.46505 * 119.99904 * 262.35037 * 5 4 3 7 7 C 1.50700 * 109.47217 * 270.00381 * 6 5 4 8 8 H 1.07993 * 120.00001 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99812 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00022 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46701 * 59.99831 * 11 9 7 13 13 H 1.48498 * 109.47426 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47072 * 300.00288 * 11 9 7 15 15 C 1.34775 * 120.00177 * 82.35357 * 5 4 3 16 16 O 1.21706 * 120.00088 * 182.14632 * 15 5 4 17 17 C 1.46582 * 120.00005 * 2.14710 * 15 5 4 18 18 C 1.36648 * 125.45727 * 172.21996 * 17 15 5 19 19 C 1.37471 * 113.29452 * 180.26096 * 18 17 15 20 20 C 1.33817 * 115.10117 * 0.02562 * 19 18 17 21 21 C 1.50704 * 124.51874 * 179.97438 * 20 19 18 22 22 S 1.70612 * 110.95486 * 359.97438 * 20 19 18 23 23 H 1.09003 * 109.47464 * 60.00069 * 1 2 3 24 24 H 1.08994 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47264 * 300.00045 * 1 2 3 26 26 H 1.08997 * 109.47561 * 59.99542 * 3 2 1 27 27 H 1.09000 * 109.46998 * 299.99813 * 3 2 1 28 28 H 1.08998 * 109.47225 * 305.00162 * 4 3 2 29 29 H 1.09000 * 109.47277 * 184.99730 * 4 3 2 30 30 H 1.09001 * 109.46623 * 30.00335 * 6 5 4 31 31 H 1.09004 * 109.46950 * 150.00043 * 6 5 4 32 32 H 0.96999 * 120.00045 * 180.02562 * 10 9 7 33 33 H 1.08001 * 123.34923 * 0.27777 * 18 17 15 34 34 H 1.07999 * 122.44656 * 180.02562 * 19 18 17 35 35 H 1.08992 * 109.46816 * 180.02562 * 21 20 19 36 36 H 1.09002 * 109.47018 * 300.01409 * 21 20 19 37 37 H 1.09002 * 109.47071 * 60.01737 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2676 -0.8711 -1.2940 7 6 5.7200 -1.0994 -0.9627 8 1 6.3620 -0.2594 -0.7425 9 6 6.2289 -2.3806 -0.9407 10 7 5.4471 -3.4035 -1.2093 11 14 8.0292 -2.6636 -0.5307 12 1 8.3153 -2.1404 0.8294 13 1 8.3239 -4.1184 -0.5731 14 1 8.8796 -1.9567 -1.5219 15 6 4.1149 1.3133 -2.3626 16 8 4.4436 0.7910 -3.4115 17 6 3.8693 2.7574 -2.3084 18 6 4.1187 3.6424 -3.3192 19 6 3.7994 4.9401 -2.9968 20 6 3.3060 5.1141 -1.7652 21 6 2.8877 6.4439 -1.1927 22 16 3.2139 3.6295 -0.9295 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5686 0.8427 29 1 3.9784 2.1766 0.0902 30 1 3.6432 -1.3904 -0.5670 31 1 4.0581 -1.2545 -2.2926 32 1 5.8050 -4.3048 -1.1934 33 1 4.5259 3.3513 -4.2762 34 1 3.9367 5.7592 -3.6871 35 1 2.5236 6.3030 -0.1751 36 1 3.7425 7.1201 -1.1823 37 1 2.0944 6.8704 -1.8068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071141032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -41.507230 kcal Electronic energy + Delta-G solvation = -20464.177091 eV Core-core repulsion = 17333.911107 eV Total energy + Delta-G solvation = -3130.265984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.27904 -37.91259 -37.20935 -34.89337 -32.79832 -31.84713 -29.79067 -27.98102 -26.38074 -25.96486 -23.64589 -22.84487 -22.61258 -20.09772 -18.26362 -17.56639 -16.43841 -16.31358 -15.99753 -15.44513 -15.11401 -14.89133 -14.65549 -14.09448 -13.98719 -13.70002 -13.34058 -12.94521 -12.48294 -12.38435 -12.26076 -12.08340 -11.85224 -11.69432 -11.57614 -11.22637 -10.93652 -10.89963 -10.51538 -10.31797 -10.08606 -9.61449 -9.49841 -9.11918 -8.46730 -8.36632 -8.28388 -7.66571 -5.97605 -4.02475 0.75657 1.65540 2.07068 2.63836 3.36091 3.40258 3.43233 3.77536 3.89770 3.97349 4.49922 4.79485 4.96405 5.10797 5.19712 5.34880 5.35426 5.38420 5.40133 5.44347 5.50969 5.51959 5.56404 5.65688 5.81943 5.82561 6.11387 6.14887 6.32924 6.54980 7.18644 7.34731 7.51387 7.58515 7.98780 8.29537 8.37400 8.90435 9.06238 9.61583 11.10359 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.005832 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.854449 B = 4799.921954 C = 5749.765048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.037 3.963 4 C 0.100 3.900 5 N -0.581 5.581 6 C 0.252 3.748 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.574 3.426 16 O -0.528 6.528 17 C -0.250 4.250 18 C -0.065 4.065 19 C -0.154 4.154 20 C -0.243 4.243 21 C -0.080 4.080 22 S 0.212 5.788 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.380 17.194 4.030 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.042 4.042 4 C -0.026 4.026 5 N -0.311 5.311 6 C 0.133 3.867 7 C -0.569 4.569 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.360 3.640 16 O -0.406 6.406 17 C -0.370 4.370 18 C -0.098 4.098 19 C -0.184 4.184 20 C -0.361 4.361 21 C -0.138 4.138 22 S 0.480 5.520 23 H 0.055 0.945 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.577 16.124 4.891 19.381 hybrid contribution 1.299 0.628 -1.215 1.886 sum -8.277 16.752 3.676 19.044 Atomic orbital electron populations 1.22718 0.81782 1.02698 0.99311 1.88079 1.18932 1.26683 1.95182 1.23360 0.94771 0.85622 1.00418 1.21840 0.91777 0.98418 0.90604 1.48065 1.64024 1.12002 1.07033 1.19364 0.95836 0.72184 0.99287 1.21427 0.95114 0.92538 1.47799 0.92571 1.24908 0.97939 0.95845 0.95232 1.69935 1.35547 0.98836 1.48814 0.86577 0.85130 0.76991 0.78811 1.20271 1.21187 1.20230 1.16970 0.78663 0.83685 0.84681 1.90799 1.47995 1.72292 1.29541 1.25026 1.13990 0.98782 0.99213 1.20696 0.98244 0.91325 0.99490 1.19836 1.04590 0.97331 0.96681 1.24905 1.07271 1.03555 1.00398 1.20291 1.01550 0.91608 1.00337 1.83644 1.59423 0.93931 1.14979 0.94468 0.89648 0.94496 0.92278 0.92801 0.87297 0.89850 0.93711 0.93795 0.92705 0.83274 0.84822 0.91682 0.90875 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.34 10.46 -35.23 -0.37 -6.71 16 3 C 0.04 0.54 4.80 37.16 0.18 0.72 16 4 C 0.10 1.72 5.34 -4.04 -0.02 1.70 16 5 N -0.58 -13.01 2.42 -176.64 -0.43 -13.44 16 6 C 0.25 6.83 5.14 -5.19 -0.03 6.81 16 7 C -0.53 -15.36 9.39 -34.44 -0.32 -15.68 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 11 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.57 12.99 7.55 -12.90 -0.10 12.90 16 16 O -0.53 -14.11 16.42 5.18 0.09 -14.03 16 17 C -0.25 -4.41 6.07 -36.79 -0.22 -4.64 16 18 C -0.07 -1.03 10.02 -40.44 -0.41 -1.44 16 19 C -0.15 -1.97 9.99 -41.41 -0.41 -2.38 16 20 C -0.24 -2.86 6.28 -35.86 -0.23 -3.09 16 21 C -0.08 -0.65 10.33 36.01 0.37 -0.28 16 22 S 0.21 2.75 15.37 -107.50 -1.65 1.09 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.79 6.23 -49.77 -0.31 0.48 16 28 H 0.11 1.91 8.01 -51.93 -0.42 1.49 16 29 H 0.08 1.26 4.45 -22.01 -0.10 1.16 16 30 H 0.04 1.25 7.88 -51.93 -0.41 0.84 16 31 H 0.04 1.35 7.39 -51.93 -0.38 0.96 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 323.37 15.07 4.87 4.87 Total: -1.00 -34.56 323.37 -6.91 -41.47 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.97 Total: -2.03 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.17 Total: -2.14 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.31 Total: -39.71 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.28 Total: -20.73 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.65 Total: 1.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.56 -6.91 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071141032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.034 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds