Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52999 * 109.46917 * 240.00498 * 2 1 3 5 5 C 1.50697 * 109.47456 * 120.00643 * 2 1 3 6 6 C 1.38121 * 120.03532 * 5.86260 * 5 2 1 7 7 C 1.38273 * 120.07196 * 179.75147 * 6 5 2 8 8 C 1.38305 * 120.15214 * 0.55066 * 7 6 5 9 9 C 1.38089 * 120.07077 * 359.70647 * 8 7 6 10 10 C 1.38891 * 120.03841 * 186.14222 * 5 2 1 11 11 N 1.39677 * 120.07654 * 359.95424 * 10 5 2 12 12 S 1.65595 * 120.00114 * 114.73558 * 11 10 5 13 13 O 1.42096 * 106.40482 * 179.87061 * 12 11 10 14 14 O 1.42098 * 106.40411 * 312.79540 * 12 11 10 15 15 C 1.76202 * 107.21904 * 66.33441 * 12 11 10 16 16 H 1.08008 * 119.99625 * 5.46412 * 15 12 11 17 17 C 1.37870 * 120.00324 * 185.47234 * 15 12 11 18 18 N 1.31519 * 120.00073 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00212 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47035 * 59.99503 * 19 17 15 21 21 H 1.48495 * 109.47171 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46826 * 299.99791 * 19 17 15 23 23 H 1.08999 * 109.47064 * 299.99561 * 1 2 3 24 24 H 1.08999 * 109.47632 * 59.99847 * 1 2 3 25 25 H 1.09002 * 109.47010 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47598 * 188.16767 * 3 2 1 27 27 H 1.09005 * 109.47209 * 308.17308 * 3 2 1 28 28 H 1.09005 * 109.46997 * 68.16549 * 3 2 1 29 29 H 1.09007 * 109.47414 * 300.47968 * 4 2 1 30 30 H 1.09001 * 109.47727 * 60.48082 * 4 2 1 31 31 H 1.09005 * 109.47562 * 180.47700 * 4 2 1 32 32 H 1.07998 * 119.96322 * 0.03011 * 6 5 2 33 33 H 1.08000 * 119.92403 * 180.27941 * 7 6 5 34 34 H 1.07991 * 119.96817 * 179.72228 * 8 7 6 35 35 H 1.08001 * 120.03683 * 180.02562 * 9 8 7 36 36 H 0.96996 * 119.99504 * 294.74008 * 11 10 5 37 37 H 0.97002 * 120.00154 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.1414 -1.3406 2.0771 7 6 1.6021 -1.9971 3.2034 8 6 2.9545 -2.0157 3.4923 9 6 3.8501 -1.3833 2.6528 10 6 3.3912 -0.7276 1.5172 11 7 4.2945 -0.0873 0.6656 12 16 5.1525 1.2232 1.2029 13 8 5.9727 1.6376 0.1192 14 8 4.2168 2.0809 1.8418 15 6 6.2439 0.6513 2.4625 16 1 6.3146 -0.4048 2.6771 17 6 7.0074 1.5520 3.1742 18 7 6.9216 2.8381 2.9127 19 14 8.1639 0.9458 4.5101 20 1 9.1615 0.0188 3.9180 21 1 8.8657 2.1036 5.1202 22 1 7.3842 0.2330 5.5538 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1202 1.4460 -0.1460 27 1 1.5623 1.9968 -0.8079 28 1 1.8008 1.9124 0.9540 29 1 1.6696 -1.7464 -1.2538 30 1 1.6837 -0.2023 -2.1393 31 1 3.1299 -0.7286 -1.2452 32 1 0.0843 -1.3242 1.8568 33 1 0.9037 -2.4928 3.8615 34 1 3.3105 -2.5255 4.3752 35 1 4.9061 -1.3985 2.8787 36 1 4.4191 -0.4103 -0.2404 37 1 7.4590 3.4718 3.4132 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071174480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = -69.032629 kcal Electronic energy + Delta-G solvation = -21469.932339 eV Core-core repulsion = 18338.472765 eV Total energy + Delta-G solvation = -3131.459575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83341 -36.03042 -35.25852 -34.31783 -34.00251 -33.10867 -29.81584 -28.37827 -27.22163 -26.94535 -26.12692 -22.51754 -21.74751 -19.37130 -18.76311 -17.63848 -16.98477 -16.21292 -15.81569 -15.04709 -14.76972 -14.11627 -14.06478 -13.88162 -13.72399 -13.47575 -13.15229 -12.48032 -12.08608 -11.96615 -11.82353 -11.71127 -11.41765 -11.39738 -11.22367 -10.96311 -10.80445 -10.66260 -10.62850 -10.57439 -10.33533 -10.25089 -10.14444 -9.28581 -9.25836 -8.72895 -8.38227 -7.92385 -6.73086 -5.35725 1.67173 1.79560 2.29618 3.06735 3.11295 3.16337 4.02828 4.13239 4.61775 4.64535 4.86402 5.01761 5.22947 5.36494 5.43104 5.48459 5.67092 5.70230 5.75526 5.90982 5.92632 5.95597 6.00390 6.11338 6.17122 6.26515 6.29398 6.43038 6.50314 6.52955 6.69960 6.84511 6.87286 6.91102 7.08949 7.26328 7.38533 7.89105 7.93458 8.85076 10.21272 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.007416 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.538478 B = 3774.537224 C = 4590.207184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.025 4.025 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.078 4.078 6 C -0.117 4.117 7 C -0.133 4.133 8 C -0.114 4.114 9 C -0.128 4.128 10 C 0.177 3.823 11 N -1.082 6.082 12 S 2.706 3.294 13 O -1.006 7.006 14 O -0.986 6.986 15 C -1.021 5.021 16 H 0.105 0.895 17 C 0.134 3.866 18 N -0.843 5.843 19 Si 0.918 3.082 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.263 1.263 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.407 0.593 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -9.133 -2.159 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.132 4.132 9 C -0.149 4.149 10 C 0.082 3.918 11 N -0.832 5.832 12 S 2.807 3.193 13 O -0.997 6.997 14 O -0.976 6.976 15 C -1.154 5.154 16 H 0.123 0.877 17 C -0.084 4.084 18 N -0.473 5.473 19 Si 0.742 3.258 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.187 1.187 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.245 0.755 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.052 -7.947 -2.350 13.027 hybrid contribution 1.056 -0.833 0.787 1.558 sum -8.996 -8.780 -1.562 12.667 Atomic orbital electron populations 1.21945 0.94447 1.01436 1.01918 1.19413 0.95148 0.95609 0.92346 1.22027 1.01072 0.93874 1.02657 1.21939 1.01375 0.99944 0.96543 1.19978 0.92339 0.98723 0.97066 1.20960 0.99203 0.98524 0.94833 1.21045 0.95583 1.00876 0.97622 1.20963 0.93178 0.99938 0.99161 1.21788 1.01539 0.96299 0.95224 1.17051 0.88121 0.94837 0.91832 1.54156 1.55824 1.51133 1.22113 1.00882 0.73095 0.70916 0.74371 1.93391 1.68675 1.79992 1.57631 1.93391 1.64236 1.63115 1.76813 1.30592 1.41812 1.03324 1.39718 0.87725 1.24727 0.94392 0.93560 0.95722 1.69889 1.36805 1.01926 1.38635 0.86227 0.79981 0.79230 0.80355 1.18797 1.20048 1.18711 0.92193 0.92578 0.92525 0.93158 0.93017 0.90933 0.92644 0.92315 0.92372 0.85823 0.86529 0.86144 0.84153 0.75549 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.14 37.16 0.27 -1.40 16 2 C -0.03 -0.38 0.75 -155.66 -0.12 -0.49 16 3 C -0.14 -2.48 7.16 37.16 0.27 -2.21 16 4 C -0.14 -1.85 8.31 37.16 0.31 -1.54 16 5 C -0.08 -1.30 4.76 -104.42 -0.50 -1.80 16 6 C -0.12 -1.69 8.99 -39.61 -0.36 -2.04 16 7 C -0.13 -1.85 10.04 -39.54 -0.40 -2.25 16 8 C -0.11 -1.76 10.04 -39.61 -0.40 -2.16 16 9 C -0.13 -2.36 9.32 -39.38 -0.37 -2.73 16 10 C 0.18 3.38 5.41 -83.79 -0.45 2.93 16 11 N -1.08 -22.10 3.24 32.41 0.11 -21.99 16 12 S 2.71 71.55 3.91 -107.50 -0.42 71.13 16 13 O -1.01 -29.30 18.02 -57.17 -1.03 -30.33 16 14 O -0.99 -28.33 15.83 -57.17 -0.91 -29.24 16 15 C -1.02 -27.69 8.77 30.60 0.27 -27.43 16 16 H 0.10 2.55 5.72 -52.48 -0.30 2.25 16 17 C 0.13 3.71 5.46 -17.82 -0.10 3.62 16 18 N -0.84 -24.66 13.08 55.43 0.73 -23.93 16 19 Si 0.92 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.58 7.24 -51.93 -0.38 0.21 16 26 H 0.05 1.01 4.29 -51.93 -0.22 0.78 16 27 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.07 1.43 7.81 -51.93 -0.41 1.03 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.80 5.30 -51.93 -0.28 0.53 16 32 H 0.12 1.46 5.91 -52.49 -0.31 1.15 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.14 2.66 5.43 -52.49 -0.28 2.37 16 36 H 0.41 7.21 6.50 -34.47 -0.22 6.99 16 37 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -33.88 304.05 -8.01 -41.89 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.47 Total: 10.07 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: -1.57 Total: -37.50 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.83 Total: -45.93 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -1.94 Total: -59.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 71.55 SS G_CDS: -0.42 Total: 71.13 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.88 -8.01 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071174480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.139 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds