Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.36932 * 119.99861 * 65.00424 * 12 9 8 14 14 H 1.08001 * 120.00522 * 359.97438 * 13 12 9 15 15 C 1.38815 * 119.99948 * 179.97438 * 13 12 9 16 16 N 1.31617 * 119.99777 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00121 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47169 * 59.99770 * 17 15 13 19 19 H 1.48500 * 109.47337 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46914 * 299.99919 * 17 15 13 21 21 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 22 22 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 23 23 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 24 24 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 25 25 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 28 28 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 29 29 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 30 30 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 31 31 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 32 32 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 33 33 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 35 35 H 0.97004 * 120.00002 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.00299 * 179.97438 * 21 8 7 37 37 H 1.07997 * 120.00423 * 359.97438 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 16 3.5334 -2.8413 4.9314 10 8 3.8127 -1.8298 5.8895 11 8 2.6289 -3.9106 5.1715 12 7 4.9868 -3.5357 4.5472 13 6 6.0604 -2.7465 4.2313 14 1 5.9592 -1.6713 4.2324 15 6 7.2789 -3.3286 3.9098 16 7 7.4024 -4.6389 3.9089 17 14 8.7433 -2.2521 3.4782 18 1 9.0611 -1.3653 4.6261 19 1 9.9166 -3.1105 3.1755 20 1 8.4160 -1.4246 2.2892 21 6 3.2880 -0.6902 3.2690 22 6 2.8265 -0.0384 2.1407 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2076 -2.1391 31 1 3.1300 -0.7218 -1.2489 32 1 1.0771 -2.5585 0.7387 33 1 1.8973 -3.7190 2.7496 34 1 5.0777 -4.5014 4.5458 35 1 8.2538 -5.0457 3.6838 36 1 3.9085 -0.1651 3.9801 37 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071574259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -66.698206 kcal Electronic energy + Delta-G solvation = -20431.231071 eV Core-core repulsion = 17299.872724 eV Total energy + Delta-G solvation = -3131.358346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.63631 -36.22732 -36.09742 -34.72468 -34.58964 -30.93013 -30.86458 -29.83649 -27.44205 -27.35888 -24.50271 -23.14863 -22.10421 -19.29746 -18.51664 -18.12930 -17.28503 -16.34203 -15.41542 -15.23202 -14.55195 -14.43970 -14.36220 -14.22295 -13.68811 -13.40590 -13.16620 -12.85043 -12.76526 -12.13775 -12.04486 -11.93285 -11.79338 -11.38124 -11.28731 -11.08477 -11.06079 -11.03297 -10.89902 -10.89705 -10.58540 -10.45648 -10.31255 -10.00720 -9.78095 -8.68734 -8.60946 -8.25028 -6.44200 -3.89175 1.25880 1.63808 1.72144 3.19775 3.22835 3.25538 3.82574 4.10820 4.48150 4.55632 4.67106 4.81580 4.90330 5.10416 5.16663 5.20903 5.26753 5.42720 5.49356 5.58159 5.64596 5.67343 5.74812 5.76511 5.89322 5.94342 5.95850 6.14492 6.18100 6.19864 6.36129 6.59006 6.68568 6.77402 7.03537 7.27285 7.51002 8.67977 8.82397 9.24750 10.72071 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.005939 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.038373 B = 4713.089595 C = 5623.353307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.037 4.037 6 C -0.144 4.144 7 C -0.023 4.023 8 C -0.661 4.661 9 S 2.626 3.374 10 O -0.973 6.973 11 O -1.002 7.002 12 N -0.951 5.951 13 C -0.280 4.280 14 H 0.102 0.898 15 C 0.032 3.968 16 N -0.882 5.882 17 Si 0.921 3.079 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.018 4.018 22 C -0.149 4.149 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.411 0.589 35 H 0.274 0.726 36 H 0.135 0.865 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 8.083 -9.476 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.037 4.037 6 C -0.162 4.162 7 C -0.042 4.042 8 C -0.743 4.743 9 S 2.716 3.284 10 O -0.963 6.963 11 O -0.991 6.991 12 N -0.704 5.704 13 C -0.419 4.419 14 H 0.120 0.880 15 C -0.175 4.175 16 N -0.523 5.523 17 Si 0.748 3.252 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.037 4.037 22 C -0.167 4.167 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.377 8.140 -8.713 15.170 hybrid contribution 0.865 0.227 -1.147 1.454 sum -8.512 8.367 -9.860 15.482 Atomic orbital electron populations 1.21881 0.93668 1.02162 1.01766 1.19572 0.95729 0.95181 0.92914 1.21968 1.01492 0.94876 1.01804 1.21884 1.01571 1.00233 0.95865 1.19941 0.95236 0.93897 0.94661 1.20981 1.02351 0.94620 0.98290 1.20833 0.92329 0.99264 0.91820 1.31959 1.10991 1.06507 1.24796 1.05535 0.72699 0.73093 0.77093 1.93473 1.84785 1.59802 1.58244 1.93421 1.64624 1.54828 1.86231 1.51613 1.20044 1.16449 1.82285 1.19213 0.87894 0.90875 1.43878 0.88043 1.25202 0.99195 0.96019 0.97103 1.69682 1.26652 1.09058 1.46947 0.86077 0.80419 0.79508 0.79235 1.19546 1.20734 1.19843 1.20929 0.94326 0.92641 0.95785 1.21238 0.99968 1.00350 0.95156 0.92463 0.92406 0.92322 0.92027 0.92490 0.92177 0.92306 0.92434 0.92248 0.86132 0.85006 0.75336 0.91621 0.84739 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.29 37.16 0.31 -1.03 16 2 C -0.03 -0.38 0.85 -155.66 -0.13 -0.51 16 3 C -0.14 -1.41 7.13 37.16 0.26 -1.15 16 4 C -0.14 -1.42 8.29 37.16 0.31 -1.12 16 5 C -0.04 -0.54 4.76 -104.62 -0.50 -1.03 16 6 C -0.14 -2.20 8.71 -39.59 -0.34 -2.55 16 7 C -0.02 -0.42 9.52 -39.59 -0.38 -0.80 16 8 C -0.66 -13.13 5.89 -39.58 -0.23 -13.37 16 9 S 2.63 58.97 5.70 -107.50 -0.61 58.36 16 10 O -0.97 -23.84 16.98 -57.17 -0.97 -24.81 16 11 O -1.00 -23.74 17.28 -57.17 -0.99 -24.73 16 12 N -0.95 -23.16 5.75 31.50 0.18 -22.97 16 13 C -0.28 -7.12 9.63 -15.06 -0.15 -7.26 16 14 H 0.10 2.44 7.82 -52.49 -0.41 2.03 16 15 C 0.03 0.81 5.50 -17.43 -0.10 0.72 16 16 N -0.88 -23.53 13.06 55.49 0.72 -22.81 16 17 Si 0.92 19.76 29.55 -169.99 -5.02 14.73 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.02 -0.32 9.52 -39.58 -0.38 -0.70 16 22 C -0.15 -2.31 8.98 -39.58 -0.36 -2.67 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 26 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 27 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 29 H 0.06 0.60 7.39 -51.93 -0.38 0.21 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.12 1.52 7.10 -52.49 -0.37 1.15 16 33 H 0.13 2.25 7.62 -52.49 -0.40 1.85 16 34 H 0.41 10.15 8.02 -34.47 -0.28 9.87 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.13 2.39 7.62 -52.49 -0.40 2.00 16 37 H 0.13 1.63 5.90 -52.49 -0.31 1.33 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -30.45 319.62 -8.52 -38.97 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.97 Total: 9.90 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: -1.68 Total: -31.46 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.91 Total: -45.78 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -1.96 Total: -49.54 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 58.97 SS G_CDS: -0.61 Total: 58.36 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.45 -8.52 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071574259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.727 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds