Wall clock time and date at job start Tue Mar 31 2020 05:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47100 * 2 1 4 4 C 1.38248 * 120.00419 * 270.02431 * 3 2 1 5 5 C 1.38214 * 120.00394 * 179.97438 * 4 3 2 6 6 C 1.38255 * 119.99827 * 359.95665 * 5 4 3 7 7 C 1.38209 * 120.00143 * 0.06332 * 6 5 4 8 8 S 1.76203 * 120.00138 * 179.97438 * 7 6 5 9 9 O 1.42094 * 106.40146 * 23.49543 * 8 7 6 10 10 O 1.42108 * 106.39911 * 156.41829 * 8 7 6 11 11 N 1.65597 * 107.21682 * 269.95629 * 8 7 6 12 12 C 1.36942 * 120.00126 * 89.99965 * 11 8 7 13 13 H 1.07992 * 119.99843 * 317.79639 * 12 11 8 14 14 C 1.38811 * 119.99993 * 137.78675 * 12 11 8 15 15 N 1.31617 * 120.00018 * 157.81958 * 14 12 11 16 16 Si 1.86801 * 120.00235 * 337.81876 * 14 12 11 17 17 H 1.48498 * 109.47291 * 95.57610 * 16 14 12 18 18 H 1.48499 * 109.47602 * 215.57950 * 16 14 12 19 19 H 1.48502 * 109.47144 * 335.57696 * 16 14 12 20 20 C 1.46506 * 120.00244 * 269.99815 * 11 8 7 21 21 C 1.52997 * 109.46932 * 93.61947 * 20 11 8 22 22 C 1.38213 * 119.99529 * 89.99972 * 3 2 1 23 23 H 1.08995 * 109.47249 * 60.00307 * 1 2 3 24 24 H 1.09003 * 109.46765 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46972 * 299.99214 * 1 2 3 26 26 H 1.09004 * 109.47059 * 240.00015 * 2 1 3 27 27 H 1.09000 * 109.47062 * 120.00593 * 2 1 3 28 28 H 1.08000 * 119.99926 * 359.97438 * 4 3 2 29 29 H 1.07999 * 120.00517 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.99871 * 180.02562 * 6 5 4 31 31 H 0.97004 * 120.00172 * 179.97438 * 15 14 12 32 32 H 1.09003 * 109.46955 * 213.62027 * 20 11 8 33 33 H 1.08996 * 109.47022 * 333.61878 * 20 11 8 34 34 H 1.09000 * 109.47600 * 183.92616 * 21 20 11 35 35 H 1.08999 * 109.47524 * 303.92890 * 21 20 11 36 36 H 1.09006 * 109.47298 * 63.92960 * 21 20 11 37 37 H 1.07998 * 120.00598 * 359.72324 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0728 -1.1972 5 6 2.7225 3.3760 -1.1972 6 6 2.9520 4.0280 0.0001 7 6 2.7226 3.3762 1.1970 8 16 3.0157 4.2069 2.7230 9 8 2.9297 5.5979 2.4456 10 8 2.2085 3.5568 3.6953 11 7 4.5887 3.9112 3.1478 12 6 5.5813 4.7574 2.7305 13 1 5.5782 5.1361 1.7192 14 6 6.5913 5.1283 3.6075 15 7 7.7446 5.5567 3.1397 16 14 6.3138 5.0197 5.4515 17 1 6.8499 3.7307 5.9577 18 1 7.0119 6.1445 6.1244 19 1 4.8589 5.0976 5.7386 20 6 4.9186 2.7444 3.9701 21 6 5.2944 1.5711 3.0629 22 6 2.2627 2.0722 1.1970 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0823 1.5637 -2.1326 29 1 2.9026 3.8852 -2.1325 30 1 3.3112 5.0465 0.0001 31 1 8.4503 5.8163 3.7525 32 1 5.7595 2.9845 4.6208 33 1 4.0554 2.4722 4.5773 34 1 5.4721 0.6841 3.6709 35 1 4.4802 1.3760 2.3650 36 1 6.1988 1.8172 2.5064 37 1 2.0784 1.5647 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081038460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:09 Heat of formation + Delta-G solvation = -48.024846 kcal Electronic energy + Delta-G solvation = -21034.052369 eV Core-core repulsion = 17903.503760 eV Total energy + Delta-G solvation = -3130.548609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.20348 -36.34336 -36.06369 -34.82867 -34.13507 -32.08247 -30.98551 -29.51099 -29.30301 -24.37033 -23.96296 -23.00258 -22.27224 -21.11205 -18.38699 -17.50513 -16.81291 -16.43353 -15.74869 -15.63426 -15.23576 -14.44573 -14.21184 -13.69171 -13.52455 -13.31643 -13.18667 -13.13208 -12.69858 -12.40171 -12.14645 -11.88689 -11.86014 -11.52882 -11.19668 -11.17212 -11.08843 -11.03473 -10.86717 -10.81173 -10.61571 -10.13515 -10.03948 -9.84956 -9.14734 -8.81312 -8.60712 -8.03913 -6.40094 -4.02051 1.05792 1.43327 1.49944 3.13775 3.30311 3.38246 3.64059 4.12824 4.26395 4.60835 4.67900 4.83343 4.95662 5.10683 5.12958 5.26294 5.29024 5.44524 5.54210 5.66549 5.73521 5.76459 5.81750 6.01137 6.03282 6.04557 6.08996 6.18815 6.30944 6.44128 6.46851 6.57759 6.58125 6.85736 7.07109 7.14469 7.68955 8.28653 9.11611 9.16102 10.69638 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.006300 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.177533 B = 4443.133375 C = 4602.439603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.111 4.111 4 C -0.075 4.075 5 C -0.141 4.141 6 C -0.019 4.019 7 C -0.647 4.647 8 S 2.636 3.364 9 O -0.962 6.962 10 O -0.998 6.998 11 N -0.865 5.865 12 C -0.293 4.293 13 H 0.103 0.897 14 C 0.073 3.927 15 N -0.859 5.859 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.262 1.262 20 C 0.107 3.893 21 C -0.164 4.164 22 C -0.023 4.023 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.274 0.726 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 -10.296 -6.112 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.160 4.160 6 C -0.038 4.038 7 C -0.731 4.731 8 S 2.735 3.265 9 O -0.952 6.952 10 O -0.988 6.988 11 N -0.697 5.697 12 C -0.428 4.428 13 H 0.120 0.880 14 C -0.137 4.137 15 N -0.496 5.496 16 Si 0.697 3.303 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.019 4.019 21 C -0.223 4.223 22 C -0.042 4.042 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.158 0.842 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.064 -9.758 -5.657 14.470 hybrid contribution 0.257 -0.343 0.267 0.505 sum -8.806 -10.101 -5.391 14.444 Atomic orbital electron populations 1.21777 0.94856 1.01594 1.02354 1.20523 0.96107 0.92442 1.02950 1.19939 1.01388 0.96600 0.93275 1.21190 0.96204 0.94607 0.97368 1.21235 1.01310 0.95219 0.98206 1.20982 0.92167 0.99596 0.91041 1.31338 1.13192 1.07178 1.21436 1.04646 0.74474 0.73590 0.73828 1.93465 1.86245 1.30140 1.85328 1.93420 1.69954 1.77540 1.57845 1.52899 1.20556 1.31350 1.64896 1.18606 1.01462 1.25031 0.97737 0.87995 1.25444 0.95029 0.94507 0.98677 1.69835 1.02641 1.41057 1.36048 0.87008 0.79819 0.77455 0.86005 1.19949 1.21277 1.18632 1.21461 1.00926 0.85818 0.93692 1.22168 1.02583 0.97353 1.00205 1.20758 0.92896 0.92245 0.98334 0.92677 0.92427 0.92313 0.91062 0.90785 0.85981 0.85479 0.84217 0.91563 0.91238 0.90909 0.92956 0.93351 0.91316 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 37.16 0.37 -1.05 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.11 -1.53 5.13 -104.63 -0.54 -2.07 16 4 C -0.08 -0.98 9.70 -39.59 -0.38 -1.37 16 5 C -0.14 -2.02 10.05 -39.58 -0.40 -2.41 16 6 C -0.02 -0.33 9.52 -39.59 -0.38 -0.71 16 7 C -0.65 -12.24 5.97 -39.58 -0.24 -12.47 16 8 S 2.64 59.47 5.65 -107.50 -0.61 58.86 16 9 O -0.96 -24.35 16.50 -57.17 -0.94 -25.29 16 10 O -1.00 -23.05 15.85 -57.17 -0.91 -23.96 16 11 N -0.86 -20.32 2.37 -59.91 -0.14 -20.46 16 12 C -0.29 -7.71 9.27 -15.06 -0.14 -7.85 16 13 H 0.10 2.81 8.06 -52.49 -0.42 2.39 16 14 C 0.07 1.97 5.30 -17.43 -0.09 1.88 16 15 N -0.86 -23.92 13.97 55.49 0.78 -23.14 16 16 Si 0.87 20.88 25.26 -169.99 -4.29 16.59 16 17 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.11 2.24 5.30 -4.04 -0.02 2.22 16 21 C -0.16 -2.89 10.22 37.16 0.38 -2.51 16 22 C -0.02 -0.38 7.89 -39.58 -0.31 -0.70 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.14 2.47 7.62 -52.49 -0.40 2.07 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.07 1.50 3.73 -51.93 -0.19 1.31 16 33 H 0.07 1.42 6.94 -51.93 -0.36 1.06 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.79 6.80 -51.93 -0.35 0.44 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.13 2.09 7.62 -52.49 -0.40 1.69 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -30.89 316.91 -8.35 -39.24 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.09 Total: 1.47 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -1.92 Total: -28.08 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.63 Total: -43.60 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.85 Total: -49.25 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.29 Total: 16.59 kcal Atomic # 16 Polarization: 59.47 SS G_CDS: -0.61 Total: 58.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.89 -8.35 -39.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081038460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.786 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds