Wall clock time and date at job start Tue Mar 31 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46977 * 2 1 4 4 C 1.53001 * 109.47430 * 120.00202 * 2 1 3 5 5 N 1.46501 * 109.46872 * 64.99756 * 4 2 1 6 6 S 1.65606 * 119.99535 * 165.27750 * 5 4 2 7 7 O 1.42103 * 106.39883 * 178.26637 * 6 5 4 8 8 O 1.42094 * 106.40295 * 311.18187 * 6 5 4 9 9 C 1.76194 * 107.21847 * 64.72528 * 6 5 4 10 10 C 1.38631 * 119.75032 * 269.72704 * 9 6 5 11 11 C 1.37616 * 120.24790 * 179.72313 * 10 9 6 12 12 C 1.40723 * 119.74422 * 0.57197 * 11 10 9 13 13 C 1.41397 * 120.24368 * 179.68218 * 12 11 10 14 14 H 1.07997 * 119.99763 * 204.40475 * 13 12 11 15 15 C 1.39952 * 119.99728 * 24.40435 * 13 12 11 16 16 N 1.30813 * 120.00315 * 17.84643 * 15 13 12 17 17 Si 1.86801 * 119.99475 * 197.84489 * 15 13 12 18 18 H 1.48504 * 109.46850 * 90.00406 * 17 15 13 19 19 H 1.48498 * 109.46872 * 210.00064 * 17 15 13 20 20 H 1.48495 * 109.47431 * 330.00274 * 17 15 13 21 21 C 1.40710 * 119.51087 * 359.69821 * 12 11 10 22 22 C 1.37614 * 119.74495 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.47106 * 299.99753 * 1 2 3 24 24 H 1.08997 * 109.47530 * 59.99690 * 1 2 3 25 25 H 1.08996 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47106 * 240.00247 * 2 1 3 27 27 H 1.09003 * 109.47140 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47234 * 299.99984 * 3 2 1 29 29 H 1.09000 * 109.47001 * 60.00183 * 3 2 1 30 30 H 1.09006 * 109.46824 * 304.99902 * 4 2 1 31 31 H 1.09002 * 109.47055 * 185.00161 * 4 2 1 32 32 H 0.97000 * 120.00512 * 345.00658 * 5 4 2 33 33 H 1.08000 * 119.87879 * 359.97438 * 10 9 6 34 34 H 1.08001 * 120.12985 * 180.27139 * 11 10 9 35 35 H 0.97001 * 119.99944 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.12738 * 179.97438 * 21 12 11 37 37 H 1.08007 * 119.87708 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 16 2.3651 -3.2300 2.2058 7 8 1.7536 -4.4838 1.9345 8 8 3.7661 -3.0123 2.1122 9 6 1.9028 -2.7962 3.8497 10 6 2.6945 -1.9227 4.5791 11 6 2.3401 -1.5725 5.8619 12 6 1.1755 -2.1141 6.4370 13 6 0.8051 -1.7667 7.7566 14 1 0.1834 -2.4331 8.3361 15 6 1.2440 -0.5593 8.3118 16 7 1.6870 0.3952 7.5346 17 14 1.1973 -0.3108 10.1626 18 1 2.4816 -0.7633 10.7553 19 1 0.9933 1.1289 10.4637 20 1 0.0802 -1.1005 10.7401 21 6 0.3827 -3.0042 5.6893 22 6 0.7533 -3.3358 4.4062 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1264 -0.6443 1.2951 32 1 0.9756 -2.4242 0.5596 33 1 3.5906 -1.5123 4.1376 34 1 2.9559 -0.8883 6.4268 35 1 1.9909 1.2322 7.9194 36 1 -0.5129 -3.4260 6.1210 37 1 0.1466 -4.0191 3.8305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:30 Heat of formation + Delta-G solvation = -84.977681 kcal Electronic energy + Delta-G solvation = -20224.325972 eV Core-core repulsion = 17092.174968 eV Total energy + Delta-G solvation = -3132.151004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.57632 -37.12127 -36.39208 -35.09499 -34.04032 -32.62422 -30.25405 -29.46165 -27.19954 -25.81602 -25.37789 -21.52374 -21.13132 -20.28850 -18.80046 -17.61574 -17.05675 -16.54497 -16.00685 -15.50922 -14.87557 -14.44937 -14.11709 -13.57978 -13.46053 -13.22442 -13.11659 -12.59572 -12.38763 -12.18820 -12.15197 -11.79538 -11.64085 -11.45200 -11.33663 -11.26318 -11.20912 -11.02090 -10.91829 -10.81069 -10.61278 -10.39214 -9.75671 -9.61956 -9.51275 -8.97709 -7.95878 -7.69916 -7.14805 -4.80273 1.30557 2.25685 2.87658 2.91150 2.92486 2.93691 3.66136 3.78752 4.24201 4.55646 4.78908 4.90891 5.00988 5.26717 5.37965 5.56699 5.60795 5.65395 5.78845 5.83176 5.98544 6.06559 6.08775 6.11425 6.14717 6.32216 6.42371 6.68083 6.71217 6.91953 7.05359 7.33036 7.37438 7.43410 7.64030 7.77333 7.97090 8.31996 8.51441 8.65261 9.76671 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.005049 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.014516 B = 5544.598897 C = 6368.034859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.147 4.147 4 C 0.124 3.876 5 N -1.126 6.126 6 S 2.695 3.305 7 O -0.988 6.988 8 O -0.986 6.986 9 C -0.787 4.787 10 C -0.017 4.017 11 C -0.183 4.183 12 C 0.139 3.861 13 C -0.436 4.436 14 H 0.087 0.913 15 C 0.073 3.927 16 N -0.766 5.766 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.239 4.239 22 C 0.002 3.998 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.289 0.711 36 H 0.100 0.900 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 3.606 -8.192 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.205 4.205 4 C -0.003 4.003 5 N -0.883 5.883 6 S 2.793 3.207 7 O -0.979 6.979 8 O -0.976 6.976 9 C -0.883 4.883 10 C -0.037 4.037 11 C -0.203 4.203 12 C 0.136 3.864 13 C -0.463 4.463 14 H 0.106 0.894 15 C -0.149 4.149 16 N -0.389 5.389 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.260 4.260 22 C -0.018 4.018 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.241 0.759 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.574 3.231 -8.385 9.004 hybrid contribution -0.741 0.574 1.108 1.451 sum -1.315 3.805 -7.277 8.316 Atomic orbital electron populations 1.21864 0.94939 1.01949 1.01905 1.21297 0.96333 0.96475 0.98078 1.21803 1.01272 0.95369 1.02093 1.21297 1.00113 0.80336 0.98530 1.55729 1.57826 1.20172 1.54582 1.01163 0.73159 0.72276 0.74089 1.93485 1.78162 1.40405 1.85843 1.93476 1.30775 1.85987 1.87342 1.29167 1.12569 1.24090 1.22427 1.20265 0.95537 0.93035 0.94867 1.21338 0.98461 1.04951 0.95571 1.17856 0.89089 0.87674 0.91816 1.19952 1.25888 1.02579 0.97928 0.89445 1.26126 0.92265 0.95151 1.01397 1.69811 1.27181 1.03870 1.38002 0.86143 0.80285 0.78496 0.81012 1.18780 1.19881 1.18206 1.21046 1.01704 1.07904 0.95350 1.20164 0.92561 0.93823 0.95225 0.92144 0.92817 0.92526 0.90722 0.92344 0.92539 0.92133 0.91285 0.90651 0.75888 0.87906 0.85979 0.90010 0.88231 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.07 37.16 0.34 -1.21 16 2 C -0.10 -1.12 3.03 -90.62 -0.27 -1.40 16 3 C -0.15 -1.44 9.19 37.16 0.34 -1.10 16 4 C 0.12 1.73 5.61 -4.04 -0.02 1.71 16 5 N -1.13 -17.01 5.88 -10.61 -0.06 -17.07 16 6 S 2.69 52.14 5.73 -107.50 -0.62 51.52 16 7 O -0.99 -20.99 17.26 -57.17 -0.99 -21.98 16 8 O -0.99 -21.21 16.74 -57.17 -0.96 -22.17 16 9 C -0.79 -17.33 5.96 -39.29 -0.23 -17.56 16 10 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 11 C -0.18 -4.55 8.70 -38.87 -0.34 -4.89 16 12 C 0.14 3.53 5.58 -106.82 -0.60 2.93 16 13 C -0.44 -10.68 9.05 -37.74 -0.34 -11.02 16 14 H 0.09 2.03 7.91 -52.49 -0.42 1.62 16 15 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 16 N -0.77 -18.00 10.95 55.55 0.61 -17.39 16 17 Si 0.92 16.95 29.60 -169.99 -5.03 11.92 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 21 C -0.24 -5.68 9.80 -38.88 -0.38 -6.06 16 22 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.58 6.90 -51.93 -0.36 0.22 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.08 7.76 -51.93 -0.40 0.67 16 32 H 0.41 5.20 7.41 -34.47 -0.26 4.95 16 33 H 0.10 2.19 7.59 -52.49 -0.40 1.80 16 34 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 35 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 36 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 37 H 0.10 2.11 7.60 -52.48 -0.40 1.71 16 LS Contribution 322.24 15.07 4.86 4.86 Total: -1.00 -29.30 322.24 -9.61 -38.91 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.07 Total: 9.51 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: -2.35 Total: -38.12 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.55 Total: -34.46 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.94 Total: -44.15 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 52.14 SS G_CDS: -0.62 Total: 51.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.30 -9.61 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.066 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds