Wall clock time and date at job start Tue Mar 31 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00092 * 2 1 4 4 C 1.38210 * 120.00002 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99745 * 359.93053 * 4 3 2 6 6 C 1.38209 * 120.00140 * 0.04656 * 5 4 3 7 7 C 1.38221 * 119.99630 * 179.97438 * 2 1 3 8 8 S 1.76199 * 120.00160 * 0.02562 * 7 2 1 9 9 O 1.42100 * 106.39968 * 308.13060 * 8 7 2 10 10 O 1.42098 * 106.40233 * 81.05163 * 8 7 2 11 11 N 1.65601 * 107.21527 * 194.59192 * 8 7 2 12 12 C 1.46496 * 119.99883 * 264.21090 * 11 8 7 13 13 C 1.46498 * 119.99949 * 84.21576 * 11 8 7 14 14 H 1.09001 * 109.47511 * 354.20895 * 13 11 8 15 15 C 1.53004 * 109.47028 * 234.21336 * 13 11 8 16 16 C 1.50697 * 109.47308 * 114.21659 * 13 11 8 17 17 H 1.07998 * 120.00111 * 359.97438 * 16 13 11 18 18 C 1.37879 * 120.00380 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99478 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00159 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.46909 * 90.00342 * 20 18 16 22 22 H 1.48503 * 109.46927 * 209.99774 * 20 18 16 23 23 H 1.48493 * 109.47276 * 329.99939 * 20 18 16 24 24 H 1.09004 * 109.46978 * 266.84617 * 1 2 3 25 25 H 1.09001 * 109.47210 * 26.84137 * 1 2 3 26 26 H 1.08997 * 109.47365 * 146.84737 * 1 2 3 27 27 H 1.08002 * 120.00119 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.00190 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.99737 * 180.32440 * 5 4 3 30 30 H 1.08005 * 119.99751 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47336 * 90.00165 * 12 11 8 32 32 H 1.09003 * 109.47461 * 210.00370 * 12 11 8 33 33 H 1.09000 * 109.47047 * 330.00115 * 12 11 8 34 34 H 1.08999 * 109.47143 * 179.07867 * 15 13 11 35 35 H 1.09004 * 109.47011 * 299.07929 * 15 13 11 36 36 H 1.09001 * 109.47142 * 59.07391 * 15 13 11 37 37 H 0.97004 * 119.99479 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2716 -0.0001 0.0004 6 6 3.5805 -1.1970 0.0009 7 6 2.1980 -1.1971 0.0005 8 16 1.3170 -2.7230 0.0005 9 8 0.3870 -2.6493 1.0724 10 8 0.9332 -2.9647 -1.3461 11 7 2.3974 -3.9128 0.3997 12 6 3.0583 -4.6858 -0.6546 13 6 2.6922 -4.1923 1.8073 14 1 2.1911 -3.4568 2.4365 15 6 4.2030 -4.1150 2.0370 16 6 2.2007 -5.5727 2.1589 17 1 1.7167 -6.1809 1.4091 18 6 2.3688 -6.0594 3.4380 19 7 2.9587 -5.3190 4.3509 20 14 1.7589 -7.7703 3.8740 21 1 2.8376 -8.7594 3.6227 22 1 1.3765 -7.8088 5.3085 23 1 0.5777 -8.1028 3.0378 24 1 -0.3633 -0.0565 1.0262 25 1 -0.3634 0.9169 -0.4640 26 1 -0.3634 -0.8603 -0.5620 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1325 -0.0010 29 1 5.3517 -0.0001 0.0053 30 1 4.1206 -2.1324 0.0020 31 1 3.9868 -4.1913 -0.9401 32 1 3.2786 -5.6880 -0.2867 33 1 2.4013 -4.7535 -1.5217 34 1 4.4210 -4.3069 3.0876 35 1 4.7029 -4.8616 1.4199 36 1 4.5612 -3.1216 1.7670 37 1 3.0774 -5.6616 5.2507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088715730.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:45 Heat of formation + Delta-G solvation = -46.722399 kcal Electronic energy + Delta-G solvation = -21175.465421 eV Core-core repulsion = 18044.973290 eV Total energy + Delta-G solvation = -3130.492131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.21607 -36.56905 -36.29846 -35.28731 -32.92550 -32.53217 -31.12282 -29.11315 -27.00147 -25.62858 -25.11738 -23.09316 -21.73234 -20.62996 -18.38607 -17.40394 -16.88526 -16.30825 -15.68475 -15.34213 -15.15944 -14.54430 -14.41810 -13.81082 -13.48026 -13.33322 -13.03989 -12.74720 -12.46005 -12.15398 -12.10431 -11.91924 -11.69810 -11.45234 -11.40605 -11.22473 -11.12322 -10.89931 -10.81288 -10.45480 -10.28913 -10.22385 -10.01844 -9.34609 -9.21504 -8.72683 -8.45787 -8.02493 -6.07607 -4.14106 0.95682 1.04921 1.36175 3.29030 3.36197 3.40492 3.52527 3.62801 4.24261 4.40426 4.69284 4.82900 4.92274 5.17337 5.21254 5.25244 5.38066 5.50154 5.58803 5.70549 5.74891 5.88077 6.04977 6.13230 6.19647 6.31977 6.35233 6.39319 6.61850 6.73148 6.78743 6.93096 6.98810 7.39592 7.59592 7.76584 8.02734 8.24896 8.87630 9.51616 10.98139 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.006029 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.150982 B = 4642.726792 C = 4922.152764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.012 3.988 3 C -0.144 4.144 4 C -0.073 4.073 5 C -0.147 4.147 6 C -0.023 4.023 7 C -0.667 4.667 8 S 2.684 3.316 9 O -0.948 6.948 10 O -0.977 6.977 11 N -0.982 5.982 12 C 0.093 3.907 13 C 0.270 3.730 14 H 0.056 0.944 15 C -0.150 4.150 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.140 0.860 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.036 0.964 36 H 0.012 0.988 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 10.517 -8.307 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 C -0.163 4.163 4 C -0.091 4.091 5 C -0.165 4.165 6 C -0.041 4.041 7 C -0.751 4.751 8 S 2.773 3.227 9 O -0.938 6.938 10 O -0.967 6.967 11 N -0.823 5.823 12 C -0.053 4.053 13 C 0.167 3.833 14 H 0.074 0.926 15 C -0.210 4.210 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.157 0.843 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.031 0.969 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.695 10.432 -8.301 13.439 hybrid contribution 0.524 -0.379 0.458 0.792 sum 2.218 10.053 -7.843 12.942 Atomic orbital electron populations 1.21224 0.90701 1.03542 1.04635 1.19460 0.95682 0.91937 0.91869 1.21086 0.94503 0.97355 1.03325 1.21340 0.94328 0.98166 0.95273 1.21236 1.00179 0.92557 1.02578 1.21043 0.92035 0.99465 0.91590 1.31269 1.06798 1.20829 1.16187 1.02310 0.74005 0.72946 0.73416 1.93600 1.58398 1.86474 1.55307 1.93518 1.81383 1.84936 1.36847 1.57377 1.62468 1.47215 1.15251 1.21392 0.96167 0.98034 0.89727 1.18758 0.93286 0.97820 0.73435 0.92605 1.22177 0.97597 0.96606 1.04581 1.21335 1.38419 0.99933 0.96225 0.91833 1.24902 0.94981 0.97851 0.96098 1.69860 1.42756 1.36789 1.03524 0.86483 0.79187 0.83976 0.77714 1.20657 1.21126 1.19768 0.88332 0.89999 0.91626 0.85379 0.85607 0.85384 0.84274 0.94299 0.89513 0.91492 0.88737 0.94493 0.96938 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.73 36.01 0.31 -1.76 16 2 C 0.01 0.19 5.88 -104.62 -0.61 -0.43 16 3 C -0.14 -1.87 9.69 -39.59 -0.38 -2.25 16 4 C -0.07 -0.88 10.05 -39.58 -0.40 -1.27 16 5 C -0.15 -1.94 10.05 -39.58 -0.40 -2.33 16 6 C -0.02 -0.36 9.43 -39.59 -0.37 -0.73 16 7 C -0.67 -11.83 5.83 -39.58 -0.23 -12.06 16 8 S 2.68 55.04 4.26 -107.50 -0.46 54.58 16 9 O -0.95 -22.19 15.64 -57.17 -0.89 -23.09 16 10 O -0.98 -20.71 16.31 -57.17 -0.93 -21.64 16 11 N -0.98 -20.40 2.09 -115.85 -0.24 -20.64 16 12 C 0.09 1.62 9.36 59.84 0.56 2.18 16 13 C 0.27 6.51 2.54 -69.08 -0.18 6.33 16 14 H 0.06 1.50 7.19 -51.93 -0.37 1.12 16 15 C -0.15 -3.31 8.84 37.16 0.33 -2.98 16 16 C -0.52 -13.85 8.08 -34.44 -0.28 -14.12 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.58 11.33 55.43 0.63 -23.95 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 26 H 0.06 1.02 6.59 -51.93 -0.34 0.67 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.14 2.10 5.55 -52.48 -0.29 1.81 16 31 H 0.04 0.56 7.68 -51.93 -0.40 0.16 16 32 H 0.09 1.54 7.44 -51.93 -0.39 1.15 16 33 H 0.07 1.11 7.00 -51.93 -0.36 0.74 16 34 H 0.09 2.32 6.09 -51.93 -0.32 2.01 16 35 H 0.04 0.76 7.55 -51.93 -0.39 0.37 16 36 H 0.01 0.23 6.81 -51.93 -0.35 -0.13 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 312.62 15.07 4.71 4.71 Total: -1.00 -31.69 312.62 -8.82 -40.51 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.87 Total: 1.35 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -1.74 Total: -27.81 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.39 Total: -44.59 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.83 Total: -44.73 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.46 Total: 54.58 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.69 -8.82 -40.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088715730.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.215 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds