Wall clock time and date at job start Tue Mar 31 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34895 * 116.99505 * 2 1 4 4 O 1.21622 * 120.00179 * 0.02562 * 3 2 1 5 5 C 1.46397 * 119.99858 * 180.02562 * 3 2 1 6 6 C 1.36753 * 125.46421 * 180.30326 * 5 3 2 7 7 C 1.37410 * 113.28631 * 180.18418 * 6 5 3 8 8 C 1.50701 * 122.44280 * 179.82396 * 7 6 5 9 9 N 1.46900 * 109.47132 * 105.32420 * 8 7 6 10 10 C 1.46906 * 110.99824 * 288.19562 * 9 8 7 11 11 C 1.46902 * 111.00025 * 164.24563 * 9 8 7 12 12 C 1.50696 * 109.46855 * 189.99614 * 11 9 8 13 13 H 1.07999 * 120.00595 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99809 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00210 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00365 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46517 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47404 * 119.99941 * 16 14 12 19 19 H 1.48495 * 109.47569 * 240.00424 * 16 14 12 20 20 C 1.33862 * 115.10966 * 359.54894 * 7 6 5 21 21 C 1.50704 * 124.51770 * 180.24793 * 20 7 6 22 22 S 1.70608 * 110.96291 * 0.25122 * 20 7 6 23 23 H 1.09002 * 109.46417 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46993 * 299.99314 * 1 2 3 25 25 H 1.09000 * 109.47219 * 59.99750 * 1 2 3 26 26 H 1.07997 * 123.35650 * 359.97438 * 6 5 3 27 27 H 1.08999 * 109.46750 * 225.32335 * 8 7 6 28 28 H 1.09001 * 109.46882 * 345.32193 * 8 7 6 29 29 H 1.09001 * 109.46770 * 57.49085 * 10 9 8 30 30 H 1.08998 * 109.47252 * 177.48764 * 10 9 8 31 31 H 1.08998 * 109.46948 * 297.49072 * 10 9 8 32 32 H 1.08996 * 109.46857 * 309.99803 * 11 9 8 33 33 H 1.09000 * 109.46930 * 70.00044 * 11 9 8 34 34 H 0.97001 * 120.00308 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.47129 * 84.67820 * 21 20 7 36 36 H 1.08992 * 109.47442 * 204.68460 * 21 20 7 37 37 H 1.09005 * 109.46815 * 324.68721 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2219 0.0005 5 6 3.5263 1.2787 -0.0006 6 6 4.2603 2.4325 0.0053 7 6 5.6168 2.2135 -0.0009 8 6 6.6177 3.3401 -0.0001 9 7 7.2217 3.4575 1.3338 10 6 6.2607 4.0052 2.3006 11 6 8.4442 4.2709 1.2884 12 6 9.1649 4.1684 2.6079 13 1 8.7561 3.5596 3.4008 14 6 10.3470 4.8510 2.8026 15 7 10.8452 5.5919 1.8370 16 14 11.2409 4.7235 4.4379 17 1 10.4781 3.8345 5.3508 18 1 12.5976 4.1613 4.2179 19 1 11.3570 6.0735 5.0452 20 6 5.9844 0.9263 -0.0019 21 6 7.4129 0.4461 -0.0029 22 16 4.6201 -0.0981 -0.0020 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 3.8179 3.4177 0.0106 27 1 7.3963 3.1349 -0.7347 28 1 6.1148 4.2731 -0.2546 29 1 5.3756 3.3698 2.3327 30 1 6.7191 4.0399 3.2888 31 1 5.9742 5.0122 1.9973 32 1 9.0926 3.9079 0.4911 33 1 8.1814 5.3114 1.0979 34 1 11.6766 6.0724 1.9741 35 1 7.7881 0.4200 1.0202 36 1 7.4596 -0.5544 -0.4327 37 1 8.0242 1.1256 -0.5968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089138856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:06 Heat of formation + Delta-G solvation = -52.489014 kcal Electronic energy + Delta-G solvation = -19676.601555 eV Core-core repulsion = 16545.859365 eV Total energy + Delta-G solvation = -3130.742190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39842 -38.77949 -36.55179 -35.71455 -32.56544 -32.03723 -29.03486 -28.01666 -26.96907 -25.97736 -23.98754 -23.45538 -21.22352 -20.16778 -18.55363 -18.32390 -16.78634 -16.50398 -16.37013 -16.03612 -15.03879 -14.46005 -14.36865 -14.12520 -13.61640 -13.49051 -13.26133 -13.23601 -12.67950 -12.33261 -12.11692 -11.94515 -11.84136 -11.62215 -11.34063 -11.01938 -10.99971 -10.87317 -10.79812 -10.71049 -10.61698 -10.45385 -9.87845 -9.24024 -8.58559 -8.47041 -8.32987 -7.27356 -6.04883 -4.06042 0.43554 1.50072 1.95143 2.25306 2.53306 2.95533 3.29478 3.37246 3.41947 4.41519 4.75003 4.87912 4.95738 4.96616 5.06047 5.27644 5.29423 5.30823 5.39454 5.67519 5.75609 5.83899 5.93597 6.05911 6.17524 6.22431 6.27096 6.34385 6.48584 6.60639 6.76657 7.24725 7.32272 7.58792 7.77878 8.04541 8.17107 8.51773 9.02108 9.58424 11.05968 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.003600 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.301604 B = 7775.055702 C = 8056.723637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.544 3.456 4 O -0.506 6.506 5 C -0.286 4.286 6 C -0.017 4.017 7 C -0.120 4.120 8 C 0.111 3.889 9 N -0.533 5.533 10 C 0.039 3.961 11 C 0.192 3.808 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.150 4.150 21 C -0.082 4.082 22 S 0.218 5.782 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.150 0.850 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.012 0.988 32 H 0.030 0.970 33 H -0.009 1.009 34 H 0.261 0.739 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 -12.519 -5.626 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.389 3.611 4 O -0.396 6.396 5 C -0.404 4.404 6 C -0.052 4.052 7 C -0.131 4.131 8 C -0.019 4.019 9 N -0.257 5.257 10 C -0.110 4.110 11 C 0.067 3.933 12 C -0.544 4.544 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.271 4.271 21 C -0.140 4.140 22 S 0.487 5.513 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.167 0.833 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.009 0.991 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.391 -14.191 -5.509 21.647 hybrid contribution 0.305 2.581 0.621 2.672 sum -15.086 -11.610 -4.887 19.653 Atomic orbital electron populations 1.23266 0.75865 1.03690 1.02683 1.86587 1.23641 1.32455 1.84843 1.19680 0.87209 0.81541 0.72632 1.90879 1.66056 1.35868 1.46752 1.23156 0.93368 0.98802 1.25078 1.20682 0.92304 0.98207 0.93981 1.18712 0.93626 0.95184 1.05594 1.20692 0.94547 0.92905 0.93753 1.62115 1.06286 1.53351 1.03969 1.22205 0.94843 0.95839 0.98093 1.19763 0.85283 0.90078 0.98127 1.21182 1.06260 1.28000 0.98920 0.91812 1.24984 0.97356 0.95354 0.96927 1.69964 1.20743 1.30893 1.32251 0.86463 0.79572 0.77729 0.83784 1.19668 1.21026 1.21154 1.24299 1.01757 0.97236 1.03789 1.20412 0.88718 1.00294 1.04575 1.82962 0.92922 1.07044 1.68332 0.87973 0.91770 0.91824 0.83267 0.90231 0.94789 0.93794 0.90816 0.96968 0.95179 0.99106 0.92983 0.88904 0.92079 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.27 10.42 -41.03 -0.43 -4.70 16 3 C 0.54 7.75 7.92 34.01 0.27 8.02 16 4 O -0.51 -8.26 16.63 -19.36 -0.32 -8.58 16 5 C -0.29 -4.04 6.45 -36.84 -0.24 -4.28 16 6 C -0.02 -0.25 9.30 -40.42 -0.38 -0.63 16 7 C -0.12 -1.84 4.53 -106.46 -0.48 -2.32 16 8 C 0.11 1.94 4.71 -4.98 -0.02 1.91 16 9 N -0.53 -11.04 4.70 -245.82 -1.16 -12.20 16 10 C 0.04 0.76 9.19 60.07 0.55 1.32 16 11 C 0.19 4.84 4.71 -4.98 -0.02 4.81 16 12 C -0.50 -13.82 8.49 -34.44 -0.29 -14.11 16 13 H 0.06 1.74 7.11 -52.49 -0.37 1.37 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 20 C -0.15 -2.10 6.28 -35.84 -0.22 -2.32 16 21 C -0.08 -1.06 9.90 36.01 0.36 -0.70 16 22 S 0.22 2.65 22.87 -107.50 -2.46 0.19 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 27 H 0.08 1.36 6.93 -51.93 -0.36 1.00 16 28 H 0.03 0.58 7.97 -51.93 -0.41 0.17 16 29 H 0.04 0.78 7.06 -51.93 -0.37 0.41 16 30 H 0.07 1.55 6.82 -51.93 -0.35 1.19 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 33 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.15 7.09 -51.93 -0.37 0.78 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -30.84 330.47 -8.34 -39.18 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -5.16 Total: -4.20 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.49 Total: -5.47 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.42 Total: -37.74 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.75 Total: -13.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.46 Total: 0.19 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.84 -8.34 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089138856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.305 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds