Wall clock time and date at job start Tue Mar 31 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00302 * 2 1 4 4 C 1.52997 * 109.47266 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46957 * 65.00518 * 4 3 2 6 6 C 1.46503 * 119.99705 * 274.79316 * 5 4 3 7 7 C 1.50703 * 109.47051 * 270.00164 * 6 5 4 8 8 H 1.07996 * 119.99699 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99576 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00207 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99512 * 179.97438 * 9 7 6 12 12 H 1.48510 * 109.47284 * 90.00071 * 11 9 7 13 13 H 1.48505 * 109.47029 * 209.99892 * 11 9 7 14 14 H 1.48493 * 109.47454 * 329.99946 * 11 9 7 15 15 C 1.34768 * 120.00503 * 94.79303 * 5 4 3 16 16 O 1.21638 * 120.00353 * 185.55578 * 15 5 4 17 17 C 1.47199 * 119.99792 * 5.55693 * 15 5 4 18 18 C 1.36006 * 123.45721 * 54.74766 * 17 15 5 19 19 S 1.70448 * 110.81579 * 180.02562 * 18 17 15 20 20 C 1.75513 * 92.44495 * 359.97438 * 19 18 17 21 21 C 1.32769 * 110.57199 * 359.97438 * 20 19 18 22 22 C 1.50704 * 123.45544 * 179.72917 * 21 20 19 23 23 H 1.09004 * 109.47637 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47064 * 299.99916 * 1 2 3 25 25 H 1.09000 * 109.47514 * 59.99512 * 1 2 3 26 26 H 1.09009 * 109.46973 * 59.99790 * 3 2 1 27 27 H 1.09000 * 109.47169 * 300.00116 * 3 2 1 28 28 H 1.08995 * 109.47586 * 304.99919 * 4 3 2 29 29 H 1.09001 * 109.47085 * 184.99986 * 4 3 2 30 30 H 1.09005 * 109.47033 * 29.99872 * 6 5 4 31 31 H 1.08998 * 109.47139 * 149.99979 * 6 5 4 32 32 H 0.97005 * 119.99875 * 179.97438 * 10 9 7 33 33 H 1.08001 * 124.59790 * 0.03756 * 18 17 15 34 34 H 1.07996 * 124.71050 * 179.97438 * 20 19 18 35 35 H 1.08996 * 109.47047 * 90.02920 * 22 21 20 36 36 H 1.09001 * 109.47078 * 210.03067 * 22 21 20 37 37 H 1.08997 * 109.47034 * 330.02892 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0056 -0.8956 -1.3744 7 6 5.3534 -1.4099 -0.9382 8 1 6.1124 -0.7186 -0.6031 9 6 5.6176 -2.7628 -0.9681 10 7 4.6933 -3.6044 -1.3767 11 14 7.2884 -3.4001 -0.4281 12 1 7.2607 -3.6900 1.0282 13 1 7.6085 -4.6436 -1.1743 14 1 8.3241 -2.3738 -0.7089 15 6 4.3558 1.3356 -2.2888 16 8 4.6251 0.8253 -3.3596 17 6 4.4439 2.7959 -2.1265 18 6 5.1837 3.3994 -1.1578 19 16 5.0543 5.0956 -1.2652 20 6 3.9783 5.0011 -2.6486 21 6 3.7546 3.7351 -2.9800 22 6 2.8660 3.3204 -4.1245 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5685 0.8426 29 1 3.9784 2.1765 0.0902 30 1 3.2297 -1.3291 -0.7433 31 1 3.8283 -1.1760 -2.4126 32 1 4.8794 -4.5562 -1.3980 33 1 5.7735 2.8750 -0.4205 34 1 3.5567 5.8543 -3.1591 35 1 3.4592 3.2437 -5.0356 36 1 2.4147 2.3535 -3.9021 37 1 2.0815 4.0642 -4.2632 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094247603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:13 Heat of formation + Delta-G solvation = -46.754709 kcal Electronic energy + Delta-G solvation = -20676.051346 eV Core-core repulsion = 17545.557814 eV Total energy + Delta-G solvation = -3130.493532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56663 -37.58702 -36.79020 -34.79208 -32.65366 -31.01424 -29.52900 -27.90565 -26.82977 -25.91781 -24.14198 -22.74246 -22.16819 -19.79496 -17.97323 -17.39604 -16.52694 -16.35391 -16.06066 -15.48058 -15.05690 -14.66545 -14.38823 -13.94212 -13.81000 -13.51109 -13.11341 -12.78948 -12.50706 -12.17838 -12.03213 -11.91266 -11.70130 -11.59861 -11.49807 -11.21283 -10.91097 -10.84892 -10.83009 -10.36066 -10.10330 -9.55712 -9.38480 -9.01566 -8.72193 -8.34389 -8.18099 -7.58338 -5.95508 -3.99829 1.00624 1.66209 1.99990 2.37145 3.34312 3.40589 3.44627 3.58194 3.98665 4.15102 4.51588 4.82363 5.04985 5.25652 5.34725 5.38754 5.44803 5.48854 5.54586 5.55972 5.60487 5.68207 5.76163 5.79646 5.90897 5.94460 6.05412 6.26517 6.34970 6.52814 7.30137 7.46076 7.59328 7.65882 8.02642 8.33695 8.48696 8.95464 9.12211 9.63870 11.12441 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.006069 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.023551 B = 4612.170726 C = 5503.082672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.048 3.952 4 C 0.104 3.896 5 N -0.580 5.580 6 C 0.248 3.752 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.565 3.435 16 O -0.531 6.531 17 C -0.128 4.128 18 C -0.219 4.219 19 S 0.150 5.850 20 C -0.241 4.241 21 C -0.060 4.060 22 C -0.092 4.092 23 H 0.084 0.916 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 17.580 2.837 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.030 4.030 4 C -0.020 4.020 5 N -0.311 5.311 6 C 0.129 3.871 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.349 3.651 16 O -0.409 6.409 17 C -0.146 4.146 18 C -0.356 4.356 19 S 0.417 5.583 20 C -0.376 4.376 21 C -0.073 4.073 22 C -0.151 4.151 23 H 0.102 0.898 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.496 18.110 3.093 19.177 hybrid contribution 0.196 -1.399 -0.354 1.456 sum -5.299 16.711 2.739 17.744 Atomic orbital electron populations 1.22694 0.82160 1.02564 0.99041 1.88116 1.18655 1.26911 1.95124 1.23044 0.95163 0.85366 0.99471 1.21708 0.91578 0.99461 0.89294 1.48110 1.62268 1.09450 1.11233 1.19384 0.97243 0.71435 0.99014 1.21464 0.99057 0.92084 1.44017 0.92719 1.24903 0.97004 0.96717 0.95368 1.69947 1.33337 1.02762 1.47063 0.86545 0.84313 0.78390 0.78430 1.20680 1.21125 1.20016 1.17574 0.78410 0.84513 0.84618 1.90775 1.49655 1.74260 1.26228 1.20551 1.01509 0.95716 0.96823 1.25513 1.06541 0.99422 1.04129 1.82801 1.45215 1.01884 1.28405 1.25171 1.08019 1.00240 1.04167 1.19872 0.98761 0.91111 0.97508 1.20467 0.97463 1.01839 0.95337 0.89756 0.94766 0.94647 0.93205 0.93744 0.89230 0.89459 0.93092 0.94144 0.92835 0.81123 0.81801 0.90518 0.91093 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.66 9.10 -35.23 -0.32 -6.98 16 3 C 0.05 0.73 6.28 37.16 0.23 0.97 16 4 C 0.10 1.80 5.77 -4.04 -0.02 1.77 16 5 N -0.58 -12.84 2.44 -176.41 -0.43 -13.27 16 6 C 0.25 6.74 5.02 -5.19 -0.03 6.71 16 7 C -0.53 -15.33 9.39 -34.44 -0.32 -15.65 16 8 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 11 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.56 12.47 6.65 -12.62 -0.08 12.39 16 16 O -0.53 -14.00 16.47 5.24 0.09 -13.92 16 17 C -0.13 -2.20 4.97 -104.63 -0.52 -2.72 16 18 C -0.22 -3.13 8.56 29.93 0.26 -2.88 16 19 S 0.15 1.64 23.02 -107.50 -2.48 -0.83 16 20 C -0.24 -2.80 10.91 28.86 0.31 -2.49 16 21 C -0.06 -0.88 6.01 -104.06 -0.63 -1.51 16 22 C -0.09 -1.25 9.81 36.01 0.35 -0.89 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 1.61 8.11 -51.93 -0.42 1.19 16 29 H 0.09 1.26 4.55 -51.93 -0.24 1.03 16 30 H 0.05 1.44 6.69 -51.93 -0.35 1.09 16 31 H 0.04 1.24 7.35 -51.93 -0.38 0.86 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.17 2.33 7.70 -52.49 -0.40 1.93 16 34 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 37 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -34.56 328.25 -7.02 -41.58 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.12 Total: -1.34 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 0.57 Total: -1.02 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.31 Total: -39.70 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.23 Total: -20.90 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.56 -7.02 -41.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094247603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.177 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds