Wall clock time and date at job start Tue Mar 31 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47227 * 2 1 4 4 C 1.38256 * 120.00100 * 264.99420 * 3 2 1 5 5 C 1.38214 * 120.00184 * 180.02562 * 4 3 2 6 6 C 1.38251 * 119.99934 * 0.02562 * 5 4 3 7 7 S 1.76204 * 120.00008 * 179.97438 * 6 5 4 8 8 O 1.42101 * 106.39997 * 336.45766 * 7 6 5 9 9 O 1.42098 * 106.40053 * 203.53568 * 7 6 5 10 10 N 1.65598 * 107.21832 * 89.99875 * 7 6 5 11 11 C 1.36939 * 120.00095 * 65.00007 * 10 7 6 12 12 H 1.07997 * 119.99728 * 359.72429 * 11 10 7 13 13 C 1.38815 * 119.99845 * 180.02562 * 11 10 7 14 14 N 1.31617 * 119.99916 * 179.72546 * 13 11 10 15 15 Si 1.86803 * 119.99958 * 359.72107 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00489 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00506 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00336 * 15 13 11 19 19 C 1.38219 * 119.99918 * 0.24814 * 6 5 4 20 20 C 1.38216 * 120.00006 * 85.01799 * 3 2 1 21 21 C 1.50700 * 120.00000 * 0.02562 * 20 3 2 22 22 C 1.53001 * 109.47022 * 85.00089 * 21 20 3 23 23 H 1.09004 * 109.46736 * 60.00008 * 1 2 3 24 24 H 1.09003 * 109.47132 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47474 * 300.00316 * 1 2 3 26 26 H 1.08997 * 109.47474 * 239.99684 * 2 1 3 27 27 H 1.09006 * 109.46987 * 119.99513 * 2 1 3 28 28 H 1.07997 * 119.99732 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.99901 * 179.97438 * 5 4 3 30 30 H 0.97004 * 119.99990 * 245.00397 * 10 7 6 31 31 H 0.97000 * 120.00284 * 179.97438 * 14 13 11 32 32 H 1.08002 * 119.99471 * 179.72630 * 19 6 5 33 33 H 1.08997 * 109.47025 * 204.99549 * 21 20 3 34 34 H 1.08997 * 109.47371 * 325.00459 * 21 20 3 35 35 H 1.09001 * 109.47079 * 179.97438 * 22 21 20 36 36 H 1.09003 * 109.47218 * 299.99643 * 22 21 20 37 37 H 1.09000 * 109.47238 * 59.99855 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3613 2.0377 -1.1928 5 6 2.8225 3.3406 -1.1927 6 6 2.9555 4.0268 0.0001 7 16 3.5441 5.6876 0.0002 8 8 4.2917 5.8484 -1.1975 9 8 4.0870 5.9208 1.2925 10 7 2.2226 6.6761 -0.1371 11 6 1.2890 6.7141 0.8639 12 1 1.4123 6.0961 1.7410 13 6 0.1810 7.5423 0.7485 14 7 -0.7191 7.5748 1.7082 15 14 -0.0324 8.6108 -0.7688 16 1 -0.7957 7.8612 -1.7987 17 1 -0.7731 9.8453 -0.4047 18 1 1.3018 8.9754 -1.3092 19 6 2.6320 3.4082 1.1930 20 6 2.1647 2.1070 1.1925 21 6 1.8072 1.4342 2.4927 22 6 3.0051 0.6253 2.9945 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.2578 1.5016 -2.1245 29 1 3.0799 3.8224 -2.1245 30 1 2.1099 7.2282 -0.9267 31 1 -1.4932 8.1538 1.6278 32 1 2.7401 3.9428 2.1252 33 1 1.5437 2.1901 3.2324 34 1 0.9590 0.7679 2.3358 35 1 2.7466 0.1391 3.9352 36 1 3.2687 -0.1306 2.2548 37 1 3.8534 1.2916 3.1514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158077100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:44 Heat of formation + Delta-G solvation = -67.712753 kcal Electronic energy + Delta-G solvation = -20565.088119 eV Core-core repulsion = 17433.685779 eV Total energy + Delta-G solvation = -3131.402341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.52566 -36.25325 -34.90023 -34.72605 -34.55293 -33.35085 -31.47200 -29.71718 -28.93979 -24.44500 -24.19515 -23.45059 -21.46006 -20.66503 -18.73576 -18.23233 -17.03376 -16.30952 -16.04501 -15.32223 -14.88529 -14.35833 -14.14678 -13.78794 -13.54948 -13.52744 -13.17784 -13.13950 -12.73468 -12.55607 -12.31535 -11.88306 -11.61961 -11.42281 -11.29002 -11.20534 -11.18885 -11.11144 -10.99333 -10.88771 -10.49647 -10.43305 -10.37063 -10.07607 -9.81875 -8.69553 -8.45517 -8.40354 -6.38337 -3.90677 1.18224 1.50054 1.67655 3.11955 3.15576 3.19439 3.74267 4.12437 4.22505 4.68040 4.76698 4.83614 4.98296 5.03347 5.09227 5.28633 5.30397 5.40939 5.43489 5.49320 5.61420 5.68789 5.79944 5.81327 5.84378 5.95651 6.03742 6.15095 6.21812 6.35798 6.38918 6.56511 6.62205 6.80123 6.86028 7.25356 7.64217 8.28798 8.92831 9.07882 10.72855 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.006173 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.313254 B = 4534.988226 C = 4934.994243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.043 4.043 4 C -0.145 4.145 5 C -0.029 4.029 6 C -0.660 4.660 7 S 2.641 3.359 8 O -0.999 6.999 9 O -0.963 6.963 10 N -0.982 5.982 11 C -0.287 4.287 12 H 0.120 0.880 13 C 0.049 3.951 14 N -0.876 5.876 15 Si 0.881 3.119 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.265 1.265 19 C -0.008 4.008 20 C -0.105 4.105 21 C -0.088 4.088 22 C -0.148 4.148 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.132 0.868 30 H 0.390 0.610 31 H 0.274 0.726 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -13.322 -2.869 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.043 4.043 4 C -0.163 4.163 5 C -0.048 4.048 6 C -0.742 4.742 7 S 2.732 3.268 8 O -0.989 6.989 9 O -0.954 6.954 10 N -0.735 5.735 11 C -0.423 4.423 12 H 0.138 0.862 13 C -0.158 4.158 14 N -0.517 5.517 15 Si 0.708 3.292 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.190 1.190 19 C -0.027 4.027 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.205 4.205 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.150 0.850 30 H 0.225 0.775 31 H 0.085 0.915 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.816 -13.190 -2.614 13.738 hybrid contribution -0.987 0.266 -1.185 1.566 sum 1.828 -12.924 -3.800 13.595 Atomic orbital electron populations 1.21759 0.94505 1.01510 1.02749 1.20657 0.96440 0.92822 1.02836 1.19877 0.95970 0.95564 0.92895 1.21025 1.02335 0.95651 0.97314 1.20802 0.93272 0.94007 0.96739 1.31722 1.16495 1.27441 0.98541 1.04815 0.75202 0.73513 0.73227 1.93437 1.71078 1.86445 1.47905 1.93500 1.77230 1.84413 1.40220 1.52070 1.45268 1.48303 1.27809 1.18984 1.01210 1.25773 0.96376 0.86220 1.25049 0.94849 0.98124 0.97778 1.69716 1.10795 1.38432 1.32733 0.86587 0.78940 0.80840 0.82864 1.19610 1.20156 1.18972 1.20817 0.91308 0.93473 0.97123 1.19797 1.01444 0.94684 0.94673 1.20588 0.98423 0.99446 0.94055 1.21780 0.98266 0.99941 1.00503 0.92414 0.92489 0.92092 0.91193 0.90526 0.86032 0.85045 0.77531 0.91531 0.84558 0.90547 0.90783 0.92474 0.92764 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.72 37.16 0.36 -1.17 16 2 C -0.09 -0.99 5.38 -27.88 -0.15 -1.14 16 3 C -0.04 -0.62 5.13 -104.62 -0.54 -1.16 16 4 C -0.14 -2.18 9.68 -39.58 -0.38 -2.57 16 5 C -0.03 -0.51 9.52 -39.59 -0.38 -0.88 16 6 C -0.66 -12.93 5.89 -39.58 -0.23 -13.16 16 7 S 2.64 57.50 5.70 -107.50 -0.61 56.88 16 8 O -1.00 -22.43 17.28 -57.17 -0.99 -23.42 16 9 O -0.96 -23.27 16.98 -57.17 -0.97 -24.24 16 10 N -0.98 -22.65 5.55 31.50 0.17 -22.48 16 11 C -0.29 -7.41 10.12 -15.06 -0.15 -7.57 16 12 H 0.12 3.24 8.05 -52.49 -0.42 2.82 16 13 C 0.05 1.29 5.50 -17.43 -0.10 1.19 16 14 N -0.88 -24.25 13.97 55.49 0.78 -23.47 16 15 Si 0.88 19.57 27.73 -169.99 -4.71 14.86 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.26 -5.57 6.53 56.52 0.37 -5.20 16 19 C -0.01 -0.15 9.16 -39.58 -0.36 -0.51 16 20 C -0.11 -1.67 5.13 -104.62 -0.54 -2.21 16 21 C -0.09 -1.13 5.38 -27.88 -0.15 -1.28 16 22 C -0.15 -1.63 9.72 37.16 0.36 -1.27 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.67 6.80 -51.93 -0.35 0.32 16 26 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 27 H 0.08 0.76 5.62 -51.93 -0.29 0.47 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.13 2.12 7.62 -52.48 -0.40 1.72 16 30 H 0.39 8.44 5.89 -34.47 -0.20 8.24 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.14 2.57 7.61 -52.49 -0.40 2.17 16 33 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 34 H 0.07 0.84 5.63 -51.93 -0.29 0.55 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.56 6.80 -51.93 -0.35 0.20 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 317.36 15.07 4.78 4.78 Total: -1.00 -30.77 317.36 -8.64 -39.41 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.83 Total: 9.40 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -2.26 Total: -31.73 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.95 Total: -45.95 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -1.96 Total: -47.66 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Atomic # 16 Polarization: 57.50 SS G_CDS: -0.61 Total: 56.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.77 -8.64 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158077100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.302 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds